HEADER OXIDOREDUCTASE 27-NOV-98 1B2N OBSLTE 24-JAN-01 1B2N 1G72 TITLE METHANOL DEHYDROGENASE FROM METHYLOPHILUS W3A1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (METHANOL DEHYDROGENASE HEAVY SUBUNIT); COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: MEDH; COMPND 5 EC: 1.1.99.8; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (METHANOL DEHYDROGENASE LIGHT SUBUNIT); COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: MEDH; COMPND 10 EC: 1.1.99.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 STRAIN: W3A1; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 7 ORGANISM_COMMON: BACTERIA; SOURCE 8 STRAIN: W3A1 KEYWDS OXIDOREDUCTASE (PQQ(A)-CHOH(D)) EXPDTA X-RAY DIFFRACTION AUTHOR F.S.MATHEWS,Z.-X.XIA REVDAT 4 01-APR-03 1B2N 1 JRNL REVDAT 3 24-JAN-01 1B2N 1 OBSLTE REVDAT 2 22-DEC-99 1B2N 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 02-DEC-98 1B2N 0 JRNL AUTH Z.X.XIA,Y.N.HE,W.W.DAI,S.A.WHITE,G.D.BOYD, JRNL AUTH 2 F.S.MATHEWS JRNL TITL DETAILED ACTIVE SITE CONFIGURATION OF A NEW JRNL TITL 2 CRYSTAL FORM OF METHANOL DEHYDROGENASE FROM JRNL TITL 3 METHYLOPHILUS W3A1 AT 1.9 A RESOLUTION. JRNL REF BIOCHEMISTRY V. 38 1214 1999 JRNL REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.WHITE,G.BOYD,F.S.MATHEWS,Z.X.XIA,W.W.DAI, REMARK 1 AUTH 2 Y.F.ZHANG,V.L.DAVIDSON REMARK 1 TITL THE ACTIVE SITE STRUCTURE OF THE REMARK 1 TITL 2 CALCIUM-CONTAINING QUINOPROTEIN METHANOL REMARK 1 TITL 3 DEHYDROGENASE REMARK 1 REF BIOCHEMISTRY V. 32 12955 1993 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH Z.X.XIA,W.W.DAI,J.P.XIONG,Z.P.HAO,V.L.DAVIDSON, REMARK 1 AUTH 2 S.WHITE,F.S.MATHEWS REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURES OF METHANOL REMARK 1 TITL 2 DEHYDROGENASE FROM TWO METHYLOTROPHIC BACTERIA AT REMARK 1 TITL 3 2.6-A RESOLUTION REMARK 1 REF J.BIOL.CHEM. V. 267 22289 1992 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 91622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : A POSTERIORI REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 9083 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5618 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 609 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9710 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 616 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.63 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PLANE RESTRAINT (PEPTIDES, REMARK 3 ANGSTROMS) 0.014(0.020) PLANE RESTRAINT (AROMATIC RINGS, REMARK 3 ANGSTROMS)0.012(0.020) REMARK 4 REMARK 4 1B2N COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 METHANOL DEHYDROGENASE IS AN A2B2 TETRAMER. THE ASYMMETRIC REMARK 6 UNIT CONTAINS THE TETRAMER, TWO PYRROLOQUINOLINE QUINONE REMARK 6 COFACTORS (PQQ) AND 2 CALCIUM COUNTER IONS. A REMARK 6 NON-CRYSTALLOGRAPHIC TWO-FOLD AXIS RELATES THE TWO HALVES. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-1998. REMARK 100 THE RCSB ID CODE IS RCSB000151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-1995 REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51578 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 9.10000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.81300 REMARK 200 R SYM FOR SHELL (I) : 81.30000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: 4AAH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.75 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.87200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 58 REMARK 465 LYS B 59 REMARK 465 SER B 60 REMARK 465 SER B 61 REMARK 465 GLY B 62 REMARK 465 ASN B 63 REMARK 465 PHE B 64 REMARK 465 VAL B 65 REMARK 465 PHE B 66 REMARK 465 ASP B 67 REMARK 465 VAL B 68 REMARK 465 LYS B 69 REMARK 465 ALA D 58 REMARK 465 LYS D 59 REMARK 465 SER D 60 REMARK 465 SER D 61 REMARK 465 GLY D 62 REMARK 465 ASN D 63 REMARK 465 PHE D 64 REMARK 465 VAL D 65 REMARK 465 PHE D 66 REMARK 465 ASP D 67 REMARK 465 VAL D 68 REMARK 465 LYS D 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 65 SD MET A 65 CE -0.135 REMARK 500 MET A 102 SD MET A 102 CE -0.108 REMARK 500 MET A 165 SD MET A 165 CE -0.110 REMARK 500 MET A 272 SD MET A 272 CE -0.283 REMARK 500 MET A 304 CG MET A 304 SD 0.097 REMARK 500 MET A 304 SD MET A 304 CE -0.100 REMARK 500 MET A 409 SD MET A 409 CE 0.112 REMARK 500 MET A 512 CG MET A 512 SD 0.114 REMARK 500 MET A 512 SD MET A 512 CE -0.101 REMARK 500 MET A 562 SD MET A 562 CE -0.134 REMARK 500 MET A 567 SD MET A 567 CE -0.107 REMARK 500 MET C 65 CG MET C 65 SD -0.103 REMARK 500 MET C 65 SD MET C 65 CE -0.166 REMARK 500 MET C 272 SD MET C 272 CE -0.185 REMARK 500 MET C 304 CG MET C 304 SD 0.115 REMARK 500 MET C 431 SD MET C 431 CE -0.119 REMARK 500 MET C 503 SD MET C 503 CE 0.095 REMARK 500 MET C 512 SD MET C 512 CE -0.109 REMARK 500 MET C 567 SD MET C 567 CE -0.101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 72 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO A 72 C - N - CD ANGL. DEV. = -9.9 DEGREES REMARK 500 LEU A 78 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 LEU A 164 CA - CB - CG ANGL. DEV. = 13.1 DEGREES REMARK 500 LEU A 328 CA - CB - CG ANGL. DEV. = 9.5 DEGREES REMARK 500 LEU A 338 CA - CB - CG ANGL. DEV. = 10.1 DEGREES REMARK 500 LEU A 536 CA - CB - CG ANGL. DEV. = 10.9 DEGREES REMARK 500 PRO C 72 C - N - CD ANGL. DEV. = -9.9 DEGREES REMARK 500 LEU C 78 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 LEU C 164 CA - CB - CG ANGL. DEV. = 12.1 DEGREES REMARK 500 LEU C 248 CA - CB - CG ANGL. DEV. = 9.2 DEGREES REMARK 500 LEU C 536 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 105 162.99 65.81 REMARK 500 ASP C 105 159.18 72.46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 409 ASP A 410 149.55 REMARK 500 CYS C 103 CYS C 104 -146.94 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: KABSCH AND SANDER REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: KABSCH AND SANDER REMARK 999 REMARK 999 THE AMINO ACID SEQUENCE OF MEDH FROM W3A1 WAS DERIVED FROM REMARK 999 THE GENE SEQUENCES OF THE HEAVY AND LIGHT SUBUNITS IN THE REMARK 999 LAB OF F.S. MATHEWS, GENBANK ACCESSION NUMBERS U41040 AND REMARK 999 U41041, RESPECTIVELY. 571 RESIDUES WERE LOCATED FOR THE *A* REMARK 999 AND *C* CHAINS AND 69 RESIDUES FOR THE *B* AND *D* CHAINS. REMARK 999 THESE RESIDUES REPRESENT THE COMPLETE MATURE POLYPEPTIDE REMARK 999 CHAINS FOR EACH SUBUNIT. THE GENE SEQUENCES CONTAIN A REMARK 999 NUMBER OF ADDITIONAL BASE PAIRS ENCODING PORTIONS OF THE REMARK 999 PERIPLASMIC SIGNAL SEQUENCES PRECEDING MATURE POLYPEPTIDE REMARK 999 AS WELL AS FOLLOWING THE STOP CODON. DBREF 1B2N A 1 571 GB 1127820 U41040 3 573 DBREF 1B2N B 1 69 GB 1127822 U41041 28 96 DBREF 1B2N C 1 571 GB 1127820 U41040 3 573 DBREF 1B2N D 1 69 GB 1127822 U41041 28 96 SEQRES 1 A 571 ASP ALA ASP LEU ASP LYS GLN VAL ASN THR ALA GLY ALA SEQRES 2 A 571 TRP PRO ILE ALA THR GLY GLY TYR TYR SER GLN HIS ASN SEQRES 3 A 571 SER PRO LEU ALA GLN ILE ASN LYS SER ASN VAL LYS ASN SEQRES 4 A 571 VAL LYS ALA ALA TRP SER PHE SER THR GLY VAL LEU ASN SEQRES 5 A 571 GLY HIS GLU GLY ALA PRO LEU VAL ILE GLY ASP MET MET SEQRES 6 A 571 TYR VAL HIS SER ALA PHE PRO ASN ASN THR TYR ALA LEU SEQRES 7 A 571 ASN LEU ASN ASP PRO GLY LYS ILE VAL TRP GLN HIS LYS SEQRES 8 A 571 PRO LYS GLN ASP ALA SER THR LYS ALA VAL MET CYS CYS SEQRES 9 A 571 ASP VAL VAL ASP ARG GLY LEU ALA TYR GLY ALA GLY GLN SEQRES 10 A 571 ILE VAL LYS LYS GLN ALA ASN GLY HIS LEU LEU ALA LEU SEQRES 11 A 571 ASP ALA LYS THR GLY LYS ILE ASN TRP GLU VAL GLU VAL SEQRES 12 A 571 CYS ASP PRO LYS VAL GLY SER THR LEU THR GLN ALA PRO SEQRES 13 A 571 PHE VAL ALA LYS ASP THR VAL LEU MET GLY CYS SER GLY SEQRES 14 A 571 ALA GLU LEU GLY VAL ARG GLY ALA VAL ASN ALA PHE ASP SEQRES 15 A 571 LEU LYS THR GLY GLU LEU LYS TRP ARG ALA PHE ALA THR SEQRES 16 A 571 GLY SER ASP ASP SER VAL ARG LEU ALA LYS ASP PHE ASN SEQRES 17 A 571 SER ALA ASN PRO HIS TYR GLY GLN PHE GLY LEU GLY THR SEQRES 18 A 571 LYS THR TRP GLU GLY ASP ALA TRP LYS ILE GLY GLY GLY SEQRES 19 A 571 THR ASN TRP GLY TRP TYR ALA TYR ASP PRO LYS LEU ASN SEQRES 20 A 571 LEU PHE TYR TYR GLY SER GLY ASN PRO ALA PRO TRP ASN SEQRES 21 A 571 GLU THR MET ARG PRO GLY ASP ASN LYS TRP THR MET THR SEQRES 22 A 571 ILE TRP GLY ARG ASP LEU ASP THR GLY MET ALA LYS TRP SEQRES 23 A 571 GLY TYR GLN LYS THR PRO HIS ASP GLU TRP ASP PHE ALA SEQRES 24 A 571 GLY VAL ASN GLN MET VAL LEU THR ASP GLN PRO VAL ASN SEQRES 25 A 571 GLY LYS MET THR PRO LEU LEU SER HIS ILE ASP ARG ASN SEQRES 26 A 571 GLY ILE LEU TYR THR LEU ASN ARG GLU ASN GLY ASN LEU SEQRES 27 A 571 ILE VAL ALA GLU LYS VAL ASP PRO ALA VAL ASN VAL PHE SEQRES 28 A 571 LYS LYS VAL ASP LEU LYS THR GLY THR PRO VAL ARG ASP SEQRES 29 A 571 PRO GLU PHE ALA THR ARG MET ASP HIS LYS GLY THR ASN SEQRES 30 A 571 ILE CYS PRO SER ALA MET GLY PHE HIS ASN GLN GLY VAL SEQRES 31 A 571 ASP SER TYR ASP PRO GLU SER ARG THR LEU TYR ALA GLY SEQRES 32 A 571 LEU ASN HIS ILE CYS MET ASP TRP GLU PRO PHE MET LEU SEQRES 33 A 571 PRO TYR ARG ALA GLY GLN PHE PHE VAL GLY ALA THR LEU SEQRES 34 A 571 ALA MET TYR PRO GLY PRO ASN GLY PRO THR LYS LYS GLU SEQRES 35 A 571 MET GLY GLN ILE ARG ALA PHE ASP LEU THR THR GLY LYS SEQRES 36 A 571 ALA LYS TRP THR LYS TRP GLU LYS PHE ALA ALA TRP GLY SEQRES 37 A 571 GLY THR LEU TYR THR LYS GLY GLY LEU VAL TRP TYR ALA SEQRES 38 A 571 THR LEU ASP GLY TYR LEU LYS ALA LEU ASP ASN LYS ASP SEQRES 39 A 571 GLY LYS GLU LEU TRP ASN PHE LYS MET PRO SER GLY GLY SEQRES 40 A 571 ILE GLY SER PRO MET THR TYR SER PHE LYS GLY LYS GLN SEQRES 41 A 571 TYR ILE GLY SER MET TYR GLY VAL GLY GLY TRP PRO GLY SEQRES 42 A 571 VAL GLY LEU VAL PHE ASP LEU THR ASP PRO SER ALA GLY SEQRES 43 A 571 LEU GLY ALA VAL GLY ALA PHE ARG GLU LEU GLN ASN HIS SEQRES 44 A 571 THR GLN MET GLY GLY GLY LEU MET VAL PHE SER LEU SEQRES 1 B 69 TYR ASP GLY GLN ASN CYS LYS GLU PRO GLY ASN CYS TRP SEQRES 2 B 69 GLU ASN LYS PRO GLY TYR PRO GLU LYS ILE ALA GLY SER SEQRES 3 B 69 LYS TYR ASP PRO LYS HIS ASP PRO VAL GLU LEU ASN LYS SEQRES 4 B 69 GLN GLU GLU SER ILE LYS ALA MET ASP ALA ARG ASN ALA SEQRES 5 B 69 LYS ARG ILE ALA ASN ALA LYS SER SER GLY ASN PHE VAL SEQRES 6 B 69 PHE ASP VAL LYS SEQRES 1 C 571 ASP ALA ASP LEU ASP LYS GLN VAL ASN THR ALA GLY ALA SEQRES 2 C 571 TRP PRO ILE ALA THR GLY GLY TYR TYR SER GLN HIS ASN SEQRES 3 C 571 SER PRO LEU ALA GLN ILE ASN LYS SER ASN VAL LYS ASN SEQRES 4 C 571 VAL LYS ALA ALA TRP SER PHE SER THR GLY VAL LEU ASN SEQRES 5 C 571 GLY HIS GLU GLY ALA PRO LEU VAL ILE GLY ASP MET MET SEQRES 6 C 571 TYR VAL HIS SER ALA PHE PRO ASN ASN THR TYR ALA LEU SEQRES 7 C 571 ASN LEU ASN ASP PRO GLY LYS ILE VAL TRP GLN HIS LYS SEQRES 8 C 571 PRO LYS GLN ASP ALA SER THR LYS ALA VAL MET CYS CYS SEQRES 9 C 571 ASP VAL VAL ASP ARG GLY LEU ALA TYR GLY ALA GLY GLN SEQRES 10 C 571 ILE VAL LYS LYS GLN ALA ASN GLY HIS LEU LEU ALA LEU SEQRES 11 C 571 ASP ALA LYS THR GLY LYS ILE ASN TRP GLU VAL GLU VAL SEQRES 12 C 571 CYS ASP PRO LYS VAL GLY SER THR LEU THR GLN ALA PRO SEQRES 13 C 571 PHE VAL ALA LYS ASP THR VAL LEU MET GLY CYS SER GLY SEQRES 14 C 571 ALA GLU LEU GLY VAL ARG GLY ALA VAL ASN ALA PHE ASP SEQRES 15 C 571 LEU LYS THR GLY GLU LEU LYS TRP ARG ALA PHE ALA THR SEQRES 16 C 571 GLY SER ASP ASP SER VAL ARG LEU ALA LYS ASP PHE ASN SEQRES 17 C 571 SER ALA ASN PRO HIS TYR GLY GLN PHE GLY LEU GLY THR SEQRES 18 C 571 LYS THR TRP GLU GLY ASP ALA TRP LYS ILE GLY GLY GLY SEQRES 19 C 571 THR ASN TRP GLY TRP TYR ALA TYR ASP PRO LYS LEU ASN SEQRES 20 C 571 LEU PHE TYR TYR GLY SER GLY ASN PRO ALA PRO TRP ASN SEQRES 21 C 571 GLU THR MET ARG PRO GLY ASP ASN LYS TRP THR MET THR SEQRES 22 C 571 ILE TRP GLY ARG ASP LEU ASP THR GLY MET ALA LYS TRP SEQRES 23 C 571 GLY TYR GLN LYS THR PRO HIS ASP GLU TRP ASP PHE ALA SEQRES 24 C 571 GLY VAL ASN GLN MET VAL LEU THR ASP GLN PRO VAL ASN SEQRES 25 C 571 GLY LYS MET THR PRO LEU LEU SER HIS ILE ASP ARG ASN SEQRES 26 C 571 GLY ILE LEU TYR THR LEU ASN ARG GLU ASN GLY ASN LEU SEQRES 27 C 571 ILE VAL ALA GLU LYS VAL ASP PRO ALA VAL ASN VAL PHE SEQRES 28 C 571 LYS LYS VAL ASP LEU LYS THR GLY THR PRO VAL ARG ASP SEQRES 29 C 571 PRO GLU PHE ALA THR ARG MET ASP HIS LYS GLY THR ASN SEQRES 30 C 571 ILE CYS PRO SER ALA MET GLY PHE HIS ASN GLN GLY VAL SEQRES 31 C 571 ASP SER TYR ASP PRO GLU SER ARG THR LEU TYR ALA GLY SEQRES 32 C 571 LEU ASN HIS ILE CYS MET ASP TRP GLU PRO PHE MET LEU SEQRES 33 C 571 PRO TYR ARG ALA GLY GLN PHE PHE VAL GLY ALA THR LEU SEQRES 34 C 571 ALA MET TYR PRO GLY PRO ASN GLY PRO THR LYS LYS GLU SEQRES 35 C 571 MET GLY GLN ILE ARG ALA PHE ASP LEU THR THR GLY LYS SEQRES 36 C 571 ALA LYS TRP THR LYS TRP GLU LYS PHE ALA ALA TRP GLY SEQRES 37 C 571 GLY THR LEU TYR THR LYS GLY GLY LEU VAL TRP TYR ALA SEQRES 38 C 571 THR LEU ASP GLY TYR LEU LYS ALA LEU ASP ASN LYS ASP SEQRES 39 C 571 GLY LYS GLU LEU TRP ASN PHE LYS MET PRO SER GLY GLY SEQRES 40 C 571 ILE GLY SER PRO MET THR TYR SER PHE LYS GLY LYS GLN SEQRES 41 C 571 TYR ILE GLY SER MET TYR GLY VAL GLY GLY TRP PRO GLY SEQRES 42 C 571 VAL GLY LEU VAL PHE ASP LEU THR ASP PRO SER ALA GLY SEQRES 43 C 571 LEU GLY ALA VAL GLY ALA PHE ARG GLU LEU GLN ASN HIS SEQRES 44 C 571 THR GLN MET GLY GLY GLY LEU MET VAL PHE SER LEU SEQRES 1 D 69 TYR ASP GLY GLN ASN CYS LYS GLU PRO GLY ASN CYS TRP SEQRES 2 D 69 GLU ASN LYS PRO GLY TYR PRO GLU LYS ILE ALA GLY SER SEQRES 3 D 69 LYS TYR ASP PRO LYS HIS ASP PRO VAL GLU LEU ASN LYS SEQRES 4 D 69 GLN GLU GLU SER ILE LYS ALA MET ASP ALA ARG ASN ALA SEQRES 5 D 69 LYS ARG ILE ALA ASN ALA LYS SER SER GLY ASN PHE VAL SEQRES 6 D 69 PHE ASP VAL LYS HET CA A 702 1 HET CA C 702 1 HET PQQ A 701 24 HET PQQ C 701 24 HET MOH 703 2 HET MOH 704 2 HETNAM CA CALCIUM ION HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM MOH METHANOL FORMUL 5 CA 2(CA 2+) FORMUL 7 PQQ 2(C14 H6 N2 O8) FORMUL 9 MOH 2(C H4 O) FORMUL 11 HOH *612(H2 O1) HELIX 1 A1 ASP A 1 THR A 10 1 10 HELIX 2 A2 ASN A 36 VAL A 40 5 5 HELIX 3 A3 ASP A 95 MET A 102 5 8 HELIX 4 A4 ASP A 145 GLY A 149 5 5 HELIX 5 A5 GLY A 169 GLY A 173 5 5 HELIX 6 A6 SER A 197 ARG A 202 1 6 HELIX 7 A7 ASN A 211 GLY A 215 5 5 HELIX 8 A8 GLY A 218 THR A 223 1 6 HELIX 9 A9 ASN A 260 ARG A 264 5 5 HELIX 10 A10 ASP A 364 ALA A 368 5 5 HELIX 11 A11 GLY A 533 ASP A 539 1 7 HELIX 12 A12 ALA A 545 HIS A 559 1 15 HELIX 13 C1 ASP C 1 THR C 10 1 10 HELIX 14 C2 ASN C 36 VAL C 40 5 5 HELIX 15 C3 ASP C 95 MET C 102 5 8 HELIX 16 C4 ASP C 145 GLY C 149 5 5 HELIX 17 C5 GLY C 169 GLY C 173 5 5 HELIX 18 C6 SER C 197 ARG C 202 1 6 HELIX 19 C7 ASN C 211 GLY C 215 5 5 HELIX 20 C8 GLY C 218 THR C 223 1 6 HELIX 21 C9 ASN C 260 ARG C 264 5 5 HELIX 22 C10 ASP C 364 ALA C 368 5 5 HELIX 23 C11 GLY C 533 ASP C 539 1 7 HELIX 24 C12 ALA C 545 HIS C 559 1 15 SHEET 1 W1A 4 LEU A 59 ILE A 61 0 SHEET 2 W1A 4 ASP A 63 ALA A 70 -1 SHEET 3 W1A 4 ASN A 73 LEU A 80 -1 SHEET 4 W1A 4 VAL A 87 HIS A 90 -1 SHEET 1 W2A 4 ALA A 112 GLY A 114 0 SHEET 2 W2A 4 GLY A 116 GLN A 122 -1 SHEET 3 W2A 4 GLY A 125 ALA A 132 -1 SHEET 4 W2A 4 GLY A 135 VAL A 143 -1 SHEET 1 W3A 4 PHE A 157 ALA A 159 0 SHEET 2 W3A 4 ASP A 161 MET A 165 -1 SHEET 3 W3A 4 GLY A 176 LEU A 183 -1 SHEET 4 W3A 4 GLY A 186 ALA A 194 -1 SHEET 1 W4A 4 ALA A 241 PRO A 244 0 SHEET 2 W4A 4 ASN A 247 GLY A 254 -1 SHEET 3 W4A 4 MET A 272 LEU A 279 -1 SHEET 4 W4A 4 GLY A 282 LYS A 290 -1 SHEET 1 W5A 4 VAL A 305 VAL A 311 0 SHEET 2 W5A 4 LYS A 314 ASP A 323 -1 SHEET 3 W5A 4 GLY A 326 ARG A 333 -1 SHEET 4 W5A 4 GLY A 336 VAL A 344 -1 SHEET 1 W6A 4 SER A 392 ASP A 394 0 SHEET 2 W6A 4 ARG A 398 HIS A 406 -1 SHEET 3 W6A 4 MET A 443 ASP A 450 -1 SHEET 4 W6A 4 GLY A 454 LYS A 463 -1 SHEET 1 W7A 4 LEU A 471 THR A 473 0 SHEET 2 W7A 4 GLY A 476 THR A 482 -1 SHEET 3 W7A 4 GLY A 485 ASN A 492 -1 SHEET 4 W7A 4 GLY A 495 MET A 503 -1 SHEET 1 W8A 4 LYS A 41 THR A 48 0 SHEET 2 W8A 4 GLY A 564 SER A 570 -1 SHEET 3 W8A 4 LYS A 519 TYR A 526 -1 SHEET 4 W8A 4 MET A 512 PHE A 516 -1 SHEET 1 S1A 2 ASN A 349 ASP A 355 0 SHEET 2 S1A 2 GLY A 359 ASP A 364 -1 SHEET 1 S2A 3 GLY A 375 SER A 381 0 SHEET 2 S2A 3 HIS A 406 PHE A 414 -1 SHEET 3 S2A 3 GLY A 426 GLY A 434 -1 SHEET 1 W1C 4 LEU C 59 ILE C 61 0 SHEET 2 W1C 4 ASP C 63 ALA C 70 -1 SHEET 3 W1C 4 ASN C 73 LEU C 80 -1 SHEET 4 W1C 4 VAL C 87 HIS C 90 -1 SHEET 1 W2C 4 ALA C 112 GLY C 114 0 SHEET 2 W2C 4 GLY C 116 GLN C 122 -1 SHEET 3 W2C 4 GLY C 125 ALA C 132 -1 SHEET 4 W2C 4 GLY C 135 VAL C 143 -1 SHEET 1 W3C 4 PHE C 157 ALA C 159 0 SHEET 2 W3C 4 ASP C 161 MET C 165 -1 SHEET 3 W3C 4 GLY C 176 LEU C 183 -1 SHEET 4 W3C 4 GLY C 186 ALA C 194 -1 SHEET 1 W4C 4 ALA C 241 PRO C 244 0 SHEET 2 W4C 4 ASN C 247 GLY C 254 -1 SHEET 3 W4C 4 MET C 272 LEU C 279 -1 SHEET 4 W4C 4 GLY C 282 LYS C 290 -1 SHEET 1 W5C 4 VAL C 305 VAL C 311 0 SHEET 2 W5C 4 LYS C 314 ASP C 323 -1 SHEET 3 W5C 4 GLY C 326 ARG C 333 -1 SHEET 4 W5C 4 GLY C 336 VAL C 344 -1 SHEET 1 W6C 4 SER C 392 ASP C 394 0 SHEET 2 W6C 4 ARG C 398 HIS C 406 -1 SHEET 3 W6C 4 MET C 443 ASP C 450 -1 SHEET 4 W6C 4 GLY C 454 LYS C 463 -1 SHEET 1 W7C 4 LEU C 471 THR C 473 0 SHEET 2 W7C 4 GLY C 476 THR C 482 -1 SHEET 3 W7C 4 GLY C 485 ASN C 492 -1 SHEET 4 W7C 4 GLY C 495 MET C 503 -1 SHEET 1 W8C 4 LYS C 41 THR C 48 0 SHEET 2 W8C 4 GLY C 564 SER C 570 -1 SHEET 3 W8C 4 LYS C 519 TYR C 526 -1 SHEET 4 W8C 4 MET C 512 PHE C 516 -1 SHEET 1 S1C 2 ASN C 349 ASP C 355 0 SHEET 2 S1C 2 GLY C 359 ASP C 364 -1 SHEET 1 S2C 3 GLY C 375 SER C 381 0 SHEET 2 S2C 3 HIS C 406 PHE C 414 -1 SHEET 3 S2C 3 GLY C 426 GLY C 434 -1 SSBOND 1 CYS A 103 CYS A 104 SSBOND 2 CYS A 144 CYS A 167 SSBOND 3 CYS A 379 CYS A 408 SSBOND 4 CYS B 6 CYS B 12 SSBOND 5 CYS C 103 CYS C 104 SSBOND 6 CYS C 144 CYS C 167 SSBOND 7 CYS C 379 CYS C 408 SSBOND 8 CYS D 6 CYS D 12 LINK O7A PQQ A 701 CA CA A 702 LINK CA CA A 702 OE2 GLU A 171 LINK O7A PQQ C 701 CA CA C 702 LINK CA CA C 702 OE1 GLU C 171 CISPEP 1 PHE A 71 PRO A 72 0 20.02 CISPEP 2 ALA A 257 PRO A 258 0 -11.86 CISPEP 3 LYS A 269 TRP A 270 0 3.59 CISPEP 4 CYS A 379 PRO A 380 0 -6.01 CISPEP 5 PHE C 71 PRO C 72 0 17.65 CISPEP 6 ALA C 257 PRO C 258 0 -11.98 CISPEP 7 LYS C 269 TRP C 270 0 3.17 CISPEP 8 CYS C 379 PRO C 380 0 0.92 CRYST1 98.115 69.744 109.838 90.00 110.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010192 0.000000 0.003768 0.00000 SCALE2 0.000000 0.014338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009707 0.00000 MTRIX1 1 -0.995206 -0.096998 0.012534 -61.54386 1 MTRIX2 1 -0.095040 0.989356 0.110190 -2.87807 1 MTRIX3 1 -0.023089 0.108471 -0.993832 -1.53508 1