HEADER SUGAR BINDING PROTEIN 30-NOV-98 1B2P TITLE NATIVE MANNOSE-SPECIFIC BULB LECTIN FROM SCILLA CAMPANULATA (BLUEBELL) TITLE 2 AT 1.7 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (LECTIN); COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYACINTHOIDES HISPANICA; SOURCE 3 ORGANISM_TAXID: 81759; SOURCE 4 OTHER_DETAILS: LOCATED IN THE BULBS OF SCILLA CAMPANULATA (BLUEBELL) KEYWDS MANNOSE-BINDING LECTIN, MONOCOT, AGLUTININ, BLUEBELL BULBS, PROTEIN- KEYWDS 2 CARBOHYDRATE INTERACTIONS, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.D.WOOD,L.M.WRIGHT,C.D.REYNOLDS,P.J.RIZKALLAH,A.K.ALLEN,W.J.PEUMANS, AUTHOR 2 E.J.M.VAN DAMME REVDAT 4 09-AUG-23 1B2P 1 SEQADV REVDAT 3 13-JUL-11 1B2P 1 VERSN REVDAT 2 24-FEB-09 1B2P 1 VERSN REVDAT 1 22-JUL-99 1B2P 0 JRNL AUTH S.D.WOOD,L.M.WRIGHT,C.D.REYNOLDS,P.J.RIZKALLAH,A.K.ALLEN, JRNL AUTH 2 W.J.PEUMANS,E.J.VAN DAMME JRNL TITL STRUCTURE OF THE NATIVE (UNLIGATED) MANNOSE-SPECIFIC BULB JRNL TITL 2 LECTIN FROM SCILLA CAMPANULATA (BLUEBELL) AT 1.7 A JRNL TITL 3 RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 55 1264 1999 JRNL REFN ISSN 0907-4449 JRNL PMID 10393293 JRNL DOI 10.1107/S0907444999005326 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.M.WRIGHT,S.D.WOOD,C.D.REYNOLDS,P.J.RIZKALLAH,A.K.ALLEN REMARK 1 TITL CRYSTALLISATION AND PRELIMINARY STRUCTURAL STUDIES OF SCILLA REMARK 1 TITL 2 CAMPANULATA LECTIN COMPLEXED WITH ALPHA (1-6)-MANNOBIOSE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 90 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.M.WRIGHT,P.J.RIZKALLAH,S.D.WOOD,C.D.REYNOLDS REMARK 1 TITL SCILLA CAMPANULATA AGGLUTININ CRYSTALLIZED IN COMPLEX WITH REMARK 1 TITL 2 THE TRIMANNOSIDE REMARK 1 TITL 3 ALPHA-D-MAN-(1-6)-[ALPHA-D-MAN-(1-3)]-ALPHA-D-MAN REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 665 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.M.WRIGHT,S.D.WOOD,C.D.REYNOLDS,P.J.RIZKALLAH,A.K.ALLEN REMARK 1 TITL CRYSTALLISATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 SCILLA CAMPANULATA LECTIN COMPLEXED WITH ALPHA-D-MANNOSE REMARK 1 REF PROTEIN PEPT.LETT. V. 4 343 1997 REMARK 1 REFN ISSN 0929-8665 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.M.WRIGHT,S.D.WOOD,C.D.REYNOLDS,P.J.RIZKALLAH,W.J.PEUMANS, REMARK 1 AUTH 2 E.J.M.VANDAMME,A.K.ALLEN REMARK 1 TITL PURIFICATION, CRYSTALLISATION AND PRELIMINARY X-RAY ANALYSIS REMARK 1 TITL 2 OF A MANNOSE- BINDING LECTIN FROM BLUEBELL (SCILLA REMARK 1 TITL 3 CAMPANULATA) BULBS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 52 1021 1996 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 33837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1709 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1864 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.008 ; NULL REMARK 3 ANGLE DISTANCE (A) : 1.709 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: X-PLOR WAS USED INITIALLY REMARK 4 REMARK 4 1B2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-98. REMARK 100 THE DEPOSITION ID IS D_1000000180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.80 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, ROTAVATA REMARK 200 DATA SCALING SOFTWARE : CCP4 (ROTAVATA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33837 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1GNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING-DROP VAPOUR-DIFFUSION METHOD REMARK 280 WELL: 70% SATURATED AMMONIUM SULPHATE, PH 4.7 DROP: 5.5 MG/ML REMARK 280 PROTEIN, 10MM DAP, 600MM PHOSPHATE BUFFERED SALINE, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.21000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.21000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.42000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 92.95000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 85 O HOH B 165 1.91 REMARK 500 ND2 ASN B 48 O HOH B 216 1.98 REMARK 500 O HOH A 150 O HOH A 151 2.08 REMARK 500 CG GLN A 68 O HOH A 192 2.09 REMARK 500 O HOH B 121 O HOH B 122 2.09 REMARK 500 O HOH A 170 O HOH A 171 2.16 REMARK 500 O GLN B 15 O HOH B 231 2.18 REMARK 500 OD1 ASP B 110 O HOH B 141 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 237 O HOH A 237 2665 0.64 REMARK 500 O HOH A 139 O HOH B 144 4455 1.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 95 CG TYR A 95 CD2 0.083 REMARK 500 ARG A 103 NE ARG A 103 CZ 0.097 REMARK 500 ARG B 103 NE ARG B 103 CZ 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 5 CB - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 PHE A 5 CB - CG - CD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 PHE A 5 CG - CD1 - CE1 ANGL. DEV. = -7.1 DEGREES REMARK 500 LEU A 17 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 THR A 20 CA - CB - CG2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 39 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 TYR A 45 CZ - CE2 - CD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 46 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 TRP A 52 CD1 - NE1 - CE2 ANGL. DEV. = -6.0 DEGREES REMARK 500 CYS A 63 CA - CB - SG ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ALA A 65 O - C - N ANGL. DEV. = 15.1 DEGREES REMARK 500 VAL A 74 CA - C - O ANGL. DEV. = 12.7 DEGREES REMARK 500 VAL A 74 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 VAL A 75 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 TRP A 84 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 SER A 86 CA - C - O ANGL. DEV. = 12.6 DEGREES REMARK 500 VAL A 88 CA - CB - CG2 ANGL. DEV. = 11.4 DEGREES REMARK 500 TYR A 95 CG - CD2 - CE2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 102 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 103 NH1 - CZ - NH2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 VAL A 106 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 TYR A 108 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 TRP A 113 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 119 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 119 CD - NE - CZ ANGL. DEV. = 26.9 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 119 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 ASP B 11 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 THR B 20 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 GLY B 28 C - N - CA ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR B 45 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR B 45 CG - CD2 - CE2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP B 46 OD1 - CG - OD2 ANGL. DEV. = 12.3 DEGREES REMARK 500 ASP B 46 CB - CG - OD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 THR B 56 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 GLY B 57 O - C - N ANGL. DEV. = 12.0 DEGREES REMARK 500 CYS B 63 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG B 64 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 64 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 PRO B 69 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP B 70 CB - CG - OD1 ANGL. DEV. = 10.1 DEGREES REMARK 500 VAL B 75 O - C - N ANGL. DEV. = 13.9 DEGREES REMARK 500 VAL B 81 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG B 103 CD - NE - CZ ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG B 103 NH1 - CZ - NH2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 103 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 57 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 20 -12.52 80.65 REMARK 500 ASN A 47 -125.97 56.27 REMARK 500 ARG A 103 7.87 80.42 REMARK 500 THR B 20 -11.40 89.37 REMARK 500 ASN B 47 -128.08 46.49 REMARK 500 ARG B 103 -0.23 86.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 118 ARG A 119 140.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE B 34 10.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 1B2P A 1 119 UNP Q9ZP49 Q9ZP49_HYAHI 22 140 DBREF 1B2P B 1 119 UNP Q9ZP49 Q9ZP49_HYAHI 22 140 SEQADV 1B2P PHE A 27 UNP Q9ZP49 TYR 48 CONFLICT SEQADV 1B2P PHE B 27 UNP Q9ZP49 TYR 48 CONFLICT SEQRES 1 A 119 ASN ASN ILE ILE PHE SER LYS GLN PRO ASP ASP ASN HIS SEQRES 2 A 119 PRO GLN ILE LEU HIS ALA THR GLU SER LEU GLU ILE LEU SEQRES 3 A 119 PHE GLY THR HIS VAL TYR ARG PHE ILE MET GLN THR ASP SEQRES 4 A 119 CYS ASN LEU VAL LEU TYR ASP ASN ASN ASN PRO ILE TRP SEQRES 5 A 119 ALA THR ASN THR GLY GLY LEU GLY ASN GLY CYS ARG ALA SEQRES 6 A 119 VAL LEU GLN PRO ASP GLY VAL LEU VAL VAL ILE THR ASN SEQRES 7 A 119 GLU ASN VAL THR VAL TRP GLN SER PRO VAL ALA GLY LYS SEQRES 8 A 119 ALA GLY HIS TYR VAL LEU VAL LEU GLN PRO ASP ARG ASN SEQRES 9 A 119 VAL VAL ILE TYR GLY ASP ALA LEU TRP ALA THR GLN THR SEQRES 10 A 119 VAL ARG SEQRES 1 B 119 ASN ASN ILE ILE PHE SER LYS GLN PRO ASP ASP ASN HIS SEQRES 2 B 119 PRO GLN ILE LEU HIS ALA THR GLU SER LEU GLU ILE LEU SEQRES 3 B 119 PHE GLY THR HIS VAL TYR ARG PHE ILE MET GLN THR ASP SEQRES 4 B 119 CYS ASN LEU VAL LEU TYR ASP ASN ASN ASN PRO ILE TRP SEQRES 5 B 119 ALA THR ASN THR GLY GLY LEU GLY ASN GLY CYS ARG ALA SEQRES 6 B 119 VAL LEU GLN PRO ASP GLY VAL LEU VAL VAL ILE THR ASN SEQRES 7 B 119 GLU ASN VAL THR VAL TRP GLN SER PRO VAL ALA GLY LYS SEQRES 8 B 119 ALA GLY HIS TYR VAL LEU VAL LEU GLN PRO ASP ARG ASN SEQRES 9 B 119 VAL VAL ILE TYR GLY ASP ALA LEU TRP ALA THR GLN THR SEQRES 10 B 119 VAL ARG FORMUL 3 HOH *245(H2 O) SHEET 1 A 3 ILE A 3 PHE A 5 0 SHEET 2 A 3 VAL A 96 LEU A 99 -1 SHEET 3 A 3 VAL A 105 TYR A 108 -1 N TYR A 108 O VAL A 96 SHEET 1 B 4 ILE A 16 HIS A 18 0 SHEET 2 B 4 ARG A 64 LEU A 67 -1 SHEET 3 B 4 LEU A 73 ILE A 76 -1 N ILE A 76 O ARG A 64 SHEET 4 B 4 THR A 82 GLN A 85 -1 N TRP A 84 O VAL A 75 SHEET 1 C 4 SER A 22 PHE A 27 0 SHEET 2 C 4 HIS A 30 MET A 36 -1 SHEET 3 C 4 LEU A 42 ASP A 46 -1 N TYR A 45 O ARG A 33 SHEET 4 C 4 ASN A 49 ALA A 53 -1 N TRP A 52 O LEU A 44 SHEET 1 D 3 ILE B 3 PHE B 5 0 SHEET 2 D 3 VAL B 96 LEU B 99 -1 SHEET 3 D 3 VAL B 105 TYR B 108 -1 N TYR B 108 O VAL B 96 SHEET 1 E 4 ILE B 16 HIS B 18 0 SHEET 2 E 4 ARG B 64 LEU B 67 -1 SHEET 3 E 4 LEU B 73 ILE B 76 -1 N ILE B 76 O ARG B 64 SHEET 4 E 4 THR B 82 GLN B 85 -1 N TRP B 84 O VAL B 75 SHEET 1 F 4 SER B 22 PHE B 27 0 SHEET 2 F 4 HIS B 30 MET B 36 -1 SHEET 3 F 4 LEU B 42 ASP B 46 -1 N TYR B 45 O ARG B 33 SHEET 4 F 4 ASN B 49 ALA B 53 -1 N TRP B 52 O LEU B 44 SSBOND 1 CYS A 40 CYS A 63 1555 1555 1.99 SSBOND 2 CYS B 40 CYS B 63 1555 1555 1.96 CISPEP 1 HIS A 13 PRO A 14 0 -6.15 CISPEP 2 GLY A 109 ASP A 110 0 -2.90 CISPEP 3 HIS B 13 PRO B 14 0 2.45 CISPEP 4 GLY B 109 ASP B 110 0 -9.41 CRYST1 70.420 92.950 46.640 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021441 0.00000