data_1B3T # _entry.id 1B3T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1B3T pdb_00001b3t 10.2210/pdb1b3t/pdb NDB PD0024 ? ? RCSB RCSB000275 ? ? WWPDB D_1000000275 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-12-15 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 5 'Structure model' 1 4 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_entry_details 6 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1B3T _pdbx_database_status.recvd_initial_deposition_date 1998-12-14 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bochkarev, A.' 1 'Bochkareva, E.' 2 'Edwards, A.' 3 'Frappier, L.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1.' J.Mol.Biol. 284 1273 1278 1998 JMOBAK UK 0022-2836 0070 ? 9878348 10.1006/jmbi.1998.2247 1 'Crystal Structure of the DNA-Binding Domain of Theepstein-Barr Virus Origin- Binding Protein, EBNA1, Boundto DNA' 'Cell(Cambridge,Mass.)' 84 791 ? 1996 CELLB5 US 0092-8674 0998 ? ? ? 2 ;Overexpression, Purification, and Crystallization of the DNA Binding and Dimerization Domains of the Epstein-Barr Virus Nuclear Antigen 1 ; J.Biol.Chem. 270 20556 ? 1995 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bochkarev, A.' 1 ? primary 'Bochkareva, E.' 2 ? primary 'Frappier, L.' 3 ? primary 'Edwards, A.M.' 4 ? 1 'Bochkarev, A.' 5 ? 1 'Barwell, J.A.' 6 ? 1 'Pfuetzner, R.A.' 7 ? 1 'Bochkareva, E.' 8 ? 1 'Frappier, L.' 9 ? 1 'Edwards, A.M.' 10 ? 2 'Barwell, J.A.' 11 ? 2 'Bochkarev, A.' 12 ? 2 'Pfuetzner, R.A.' 13 ? 2 'Tong, H.' 14 ? 2 'Yang, D.S.' 15 ? 2 'Frappier, L.' 16 ? 2 'Edwards, A.M.' 17 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*AP*TP*AP*TP*GP*CP*TP*TP*CP*CP*C)-3') ; 5516.578 2 ? ? ? ? 2 polymer man 'PROTEIN (NUCLEAR PROTEIN EBNA1)' 16008.498 2 ? ? 'DNA-BINDING AND DIMERIZATION DOMAIN RESIDUES 459 - 607' ? 3 water nat water 18.015 182 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'EBNA-1 NUCLEAR PROTEIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DA)(DA)(DG)(DC)(DA)(DT)(DA)(DT)(DG)(DC)(DT)(DT)(DC)(DC)(DC)' GGGAAGCATATGCTTCCC C,D ? 2 'polypeptide(L)' no no ;KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLP FGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP ; ;KGGWFGKHRGQGGSNPKFENIAEGLRALLARSHVERTTDEGTWVAGVFVYGGSKTSLYNLRRGTALAIPQCRLTPLSRLP FGMAPGPGPQPGPLRESIVCYFMVFLQTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDLP ; A,B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DG n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DA n 1 11 DT n 1 12 DG n 1 13 DC n 1 14 DT n 1 15 DT n 1 16 DC n 1 17 DC n 1 18 DC n 2 1 LYS n 2 2 GLY n 2 3 GLY n 2 4 TRP n 2 5 PHE n 2 6 GLY n 2 7 LYS n 2 8 HIS n 2 9 ARG n 2 10 GLY n 2 11 GLN n 2 12 GLY n 2 13 GLY n 2 14 SER n 2 15 ASN n 2 16 PRO n 2 17 LYS n 2 18 PHE n 2 19 GLU n 2 20 ASN n 2 21 ILE n 2 22 ALA n 2 23 GLU n 2 24 GLY n 2 25 LEU n 2 26 ARG n 2 27 ALA n 2 28 LEU n 2 29 LEU n 2 30 ALA n 2 31 ARG n 2 32 SER n 2 33 HIS n 2 34 VAL n 2 35 GLU n 2 36 ARG n 2 37 THR n 2 38 THR n 2 39 ASP n 2 40 GLU n 2 41 GLY n 2 42 THR n 2 43 TRP n 2 44 VAL n 2 45 ALA n 2 46 GLY n 2 47 VAL n 2 48 PHE n 2 49 VAL n 2 50 TYR n 2 51 GLY n 2 52 GLY n 2 53 SER n 2 54 LYS n 2 55 THR n 2 56 SER n 2 57 LEU n 2 58 TYR n 2 59 ASN n 2 60 LEU n 2 61 ARG n 2 62 ARG n 2 63 GLY n 2 64 THR n 2 65 ALA n 2 66 LEU n 2 67 ALA n 2 68 ILE n 2 69 PRO n 2 70 GLN n 2 71 CYS n 2 72 ARG n 2 73 LEU n 2 74 THR n 2 75 PRO n 2 76 LEU n 2 77 SER n 2 78 ARG n 2 79 LEU n 2 80 PRO n 2 81 PHE n 2 82 GLY n 2 83 MET n 2 84 ALA n 2 85 PRO n 2 86 GLY n 2 87 PRO n 2 88 GLY n 2 89 PRO n 2 90 GLN n 2 91 PRO n 2 92 GLY n 2 93 PRO n 2 94 LEU n 2 95 ARG n 2 96 GLU n 2 97 SER n 2 98 ILE n 2 99 VAL n 2 100 CYS n 2 101 TYR n 2 102 PHE n 2 103 MET n 2 104 VAL n 2 105 PHE n 2 106 LEU n 2 107 GLN n 2 108 THR n 2 109 HIS n 2 110 ILE n 2 111 PHE n 2 112 ALA n 2 113 GLU n 2 114 VAL n 2 115 LEU n 2 116 LYS n 2 117 ASP n 2 118 ALA n 2 119 ILE n 2 120 LYS n 2 121 ASP n 2 122 LEU n 2 123 VAL n 2 124 MET n 2 125 THR n 2 126 LYS n 2 127 PRO n 2 128 ALA n 2 129 PRO n 2 130 THR n 2 131 CYS n 2 132 ASN n 2 133 ILE n 2 134 ARG n 2 135 VAL n 2 136 THR n 2 137 VAL n 2 138 CYS n 2 139 SER n 2 140 PHE n 2 141 ASP n 2 142 ASP n 2 143 GLY n 2 144 VAL n 2 145 ASP n 2 146 LEU n 2 147 PRO n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Epstein-Barr virus' _entity_src_gen.gene_src_genus Lymphocryptovirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain GD1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human herpesvirus 4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10376 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location NUCLEAR _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)PLUSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG G C . n A 1 2 DG 2 102 102 DG G C . n A 1 3 DG 3 103 103 DG G C . n A 1 4 DA 4 104 104 DA A C . n A 1 5 DA 5 105 105 DA A C . n A 1 6 DG 6 106 106 DG G C . n A 1 7 DC 7 107 107 DC C C . n A 1 8 DA 8 108 108 DA A C . n A 1 9 DT 9 109 109 DT T C . n A 1 10 DA 10 110 110 DA A C . n A 1 11 DT 11 111 111 DT T C . n A 1 12 DG 12 112 112 DG G C . n A 1 13 DC 13 113 113 DC C C . n A 1 14 DT 14 114 114 DT T C . n A 1 15 DT 15 115 115 DT T C . n A 1 16 DC 16 116 116 DC C C . n A 1 17 DC 17 117 117 DC C C . n A 1 18 DC 18 118 118 DC C C . n B 1 1 DG 1 201 201 DG G D . n B 1 2 DG 2 202 202 DG G D . n B 1 3 DG 3 203 203 DG G D . n B 1 4 DA 4 204 204 DA A D . n B 1 5 DA 5 205 205 DA A D . n B 1 6 DG 6 206 206 DG G D . n B 1 7 DC 7 207 207 DC C D . n B 1 8 DA 8 208 208 DA A D . n B 1 9 DT 9 209 209 DT T D . n B 1 10 DA 10 210 210 DA A D . n B 1 11 DT 11 211 211 DT T D . n B 1 12 DG 12 212 212 DG G D . n B 1 13 DC 13 213 213 DC C D . n B 1 14 DT 14 214 214 DT T D . n B 1 15 DT 15 215 215 DT T D . n B 1 16 DC 16 216 216 DC C D . n B 1 17 DC 17 217 217 DC C D . n B 1 18 DC 18 218 218 DC C D . n C 2 1 LYS 1 461 461 LYS LYS A . n C 2 2 GLY 2 462 462 GLY GLY A . n C 2 3 GLY 3 463 463 GLY GLY A . n C 2 4 TRP 4 464 464 TRP TRP A . n C 2 5 PHE 5 465 465 PHE PHE A . n C 2 6 GLY 6 466 466 GLY GLY A . n C 2 7 LYS 7 467 467 LYS LYS A . n C 2 8 HIS 8 468 468 HIS HIS A . n C 2 9 ARG 9 469 469 ARG ARG A . n C 2 10 GLY 10 470 470 GLY GLY A . n C 2 11 GLN 11 471 471 GLN GLN A . n C 2 12 GLY 12 472 472 GLY GLY A . n C 2 13 GLY 13 473 473 GLY GLY A . n C 2 14 SER 14 474 474 SER SER A . n C 2 15 ASN 15 475 475 ASN ASN A . n C 2 16 PRO 16 476 476 PRO PRO A . n C 2 17 LYS 17 477 477 LYS LYS A . n C 2 18 PHE 18 478 478 PHE PHE A . n C 2 19 GLU 19 479 479 GLU GLU A . n C 2 20 ASN 20 480 480 ASN ASN A . n C 2 21 ILE 21 481 481 ILE ILE A . n C 2 22 ALA 22 482 482 ALA ALA A . n C 2 23 GLU 23 483 483 GLU GLU A . n C 2 24 GLY 24 484 484 GLY GLY A . n C 2 25 LEU 25 485 485 LEU LEU A . n C 2 26 ARG 26 486 486 ARG ARG A . n C 2 27 ALA 27 487 487 ALA ALA A . n C 2 28 LEU 28 488 488 LEU LEU A . n C 2 29 LEU 29 489 489 LEU LEU A . n C 2 30 ALA 30 490 490 ALA ALA A . n C 2 31 ARG 31 491 491 ARG ARG A . n C 2 32 SER 32 492 492 SER SER A . n C 2 33 HIS 33 493 493 HIS HIS A . n C 2 34 VAL 34 494 494 VAL VAL A . n C 2 35 GLU 35 495 495 GLU GLU A . n C 2 36 ARG 36 496 496 ARG ARG A . n C 2 37 THR 37 497 497 THR THR A . n C 2 38 THR 38 498 498 THR THR A . n C 2 39 ASP 39 499 499 ASP ASP A . n C 2 40 GLU 40 500 500 GLU GLU A . n C 2 41 GLY 41 501 501 GLY GLY A . n C 2 42 THR 42 502 502 THR THR A . n C 2 43 TRP 43 503 503 TRP TRP A . n C 2 44 VAL 44 504 504 VAL VAL A . n C 2 45 ALA 45 505 505 ALA ALA A . n C 2 46 GLY 46 506 506 GLY GLY A . n C 2 47 VAL 47 507 507 VAL VAL A . n C 2 48 PHE 48 508 508 PHE PHE A . n C 2 49 VAL 49 509 509 VAL VAL A . n C 2 50 TYR 50 510 510 TYR TYR A . n C 2 51 GLY 51 511 511 GLY GLY A . n C 2 52 GLY 52 512 512 GLY GLY A . n C 2 53 SER 53 513 513 SER SER A . n C 2 54 LYS 54 514 514 LYS LYS A . n C 2 55 THR 55 515 515 THR THR A . n C 2 56 SER 56 516 516 SER SER A . n C 2 57 LEU 57 517 517 LEU LEU A . n C 2 58 TYR 58 518 518 TYR TYR A . n C 2 59 ASN 59 519 519 ASN ASN A . n C 2 60 LEU 60 520 520 LEU LEU A . n C 2 61 ARG 61 521 521 ARG ARG A . n C 2 62 ARG 62 522 522 ARG ARG A . n C 2 63 GLY 63 523 523 GLY GLY A . n C 2 64 THR 64 524 524 THR THR A . n C 2 65 ALA 65 525 525 ALA ALA A . n C 2 66 LEU 66 526 526 LEU LEU A . n C 2 67 ALA 67 527 527 ALA ALA A . n C 2 68 ILE 68 528 528 ILE ILE A . n C 2 69 PRO 69 529 529 PRO PRO A . n C 2 70 GLN 70 530 530 GLN GLN A . n C 2 71 CYS 71 531 531 CYS CYS A . n C 2 72 ARG 72 532 532 ARG ARG A . n C 2 73 LEU 73 533 533 LEU LEU A . n C 2 74 THR 74 534 534 THR THR A . n C 2 75 PRO 75 535 535 PRO PRO A . n C 2 76 LEU 76 536 536 LEU LEU A . n C 2 77 SER 77 537 537 SER SER A . n C 2 78 ARG 78 538 538 ARG ARG A . n C 2 79 LEU 79 539 539 LEU LEU A . n C 2 80 PRO 80 540 540 PRO PRO A . n C 2 81 PHE 81 541 541 PHE PHE A . n C 2 82 GLY 82 542 542 GLY GLY A . n C 2 83 MET 83 543 543 MET MET A . n C 2 84 ALA 84 544 544 ALA ALA A . n C 2 85 PRO 85 545 545 PRO PRO A . n C 2 86 GLY 86 546 546 GLY GLY A . n C 2 87 PRO 87 547 547 PRO PRO A . n C 2 88 GLY 88 548 548 GLY GLY A . n C 2 89 PRO 89 549 549 PRO PRO A . n C 2 90 GLN 90 550 550 GLN GLN A . n C 2 91 PRO 91 551 551 PRO PRO A . n C 2 92 GLY 92 552 552 GLY GLY A . n C 2 93 PRO 93 553 553 PRO PRO A . n C 2 94 LEU 94 554 554 LEU LEU A . n C 2 95 ARG 95 555 555 ARG ARG A . n C 2 96 GLU 96 556 556 GLU GLU A . n C 2 97 SER 97 557 557 SER SER A . n C 2 98 ILE 98 558 558 ILE ILE A . n C 2 99 VAL 99 559 559 VAL VAL A . n C 2 100 CYS 100 560 560 CYS CYS A . n C 2 101 TYR 101 561 561 TYR TYR A . n C 2 102 PHE 102 562 562 PHE PHE A . n C 2 103 MET 103 563 563 MET MET A . n C 2 104 VAL 104 564 564 VAL VAL A . n C 2 105 PHE 105 565 565 PHE PHE A . n C 2 106 LEU 106 566 566 LEU LEU A . n C 2 107 GLN 107 567 567 GLN GLN A . n C 2 108 THR 108 568 568 THR THR A . n C 2 109 HIS 109 569 569 HIS HIS A . n C 2 110 ILE 110 570 570 ILE ILE A . n C 2 111 PHE 111 571 571 PHE PHE A . n C 2 112 ALA 112 572 572 ALA ALA A . n C 2 113 GLU 113 573 573 GLU GLU A . n C 2 114 VAL 114 574 574 VAL VAL A . n C 2 115 LEU 115 575 575 LEU LEU A . n C 2 116 LYS 116 576 576 LYS LYS A . n C 2 117 ASP 117 577 577 ASP ASP A . n C 2 118 ALA 118 578 578 ALA ALA A . n C 2 119 ILE 119 579 579 ILE ILE A . n C 2 120 LYS 120 580 580 LYS LYS A . n C 2 121 ASP 121 581 581 ASP ASP A . n C 2 122 LEU 122 582 582 LEU LEU A . n C 2 123 VAL 123 583 583 VAL VAL A . n C 2 124 MET 124 584 584 MET MET A . n C 2 125 THR 125 585 585 THR THR A . n C 2 126 LYS 126 586 586 LYS LYS A . n C 2 127 PRO 127 587 587 PRO PRO A . n C 2 128 ALA 128 588 588 ALA ALA A . n C 2 129 PRO 129 589 589 PRO PRO A . n C 2 130 THR 130 590 590 THR THR A . n C 2 131 CYS 131 591 591 CYS CYS A . n C 2 132 ASN 132 592 592 ASN ASN A . n C 2 133 ILE 133 593 593 ILE ILE A . n C 2 134 ARG 134 594 594 ARG ARG A . n C 2 135 VAL 135 595 595 VAL VAL A . n C 2 136 THR 136 596 596 THR THR A . n C 2 137 VAL 137 597 597 VAL VAL A . n C 2 138 CYS 138 598 598 CYS CYS A . n C 2 139 SER 139 599 599 SER SER A . n C 2 140 PHE 140 600 600 PHE PHE A . n C 2 141 ASP 141 601 601 ASP ASP A . n C 2 142 ASP 142 602 602 ASP ASP A . n C 2 143 GLY 143 603 603 GLY GLY A . n C 2 144 VAL 144 604 604 VAL VAL A . n C 2 145 ASP 145 605 605 ASP ASP A . n C 2 146 LEU 146 606 606 LEU LEU A . n C 2 147 PRO 147 607 607 PRO PRO A . n D 2 1 LYS 1 461 461 LYS LYS B . n D 2 2 GLY 2 462 462 GLY GLY B . n D 2 3 GLY 3 463 463 GLY GLY B . n D 2 4 TRP 4 464 464 TRP TRP B . n D 2 5 PHE 5 465 465 PHE PHE B . n D 2 6 GLY 6 466 466 GLY GLY B . n D 2 7 LYS 7 467 467 LYS LYS B . n D 2 8 HIS 8 468 468 HIS HIS B . n D 2 9 ARG 9 469 469 ARG ARG B . n D 2 10 GLY 10 470 470 GLY GLY B . n D 2 11 GLN 11 471 471 GLN GLN B . n D 2 12 GLY 12 472 472 GLY GLY B . n D 2 13 GLY 13 473 473 GLY GLY B . n D 2 14 SER 14 474 474 SER SER B . n D 2 15 ASN 15 475 475 ASN ASN B . n D 2 16 PRO 16 476 476 PRO PRO B . n D 2 17 LYS 17 477 477 LYS LYS B . n D 2 18 PHE 18 478 478 PHE PHE B . n D 2 19 GLU 19 479 479 GLU GLU B . n D 2 20 ASN 20 480 480 ASN ASN B . n D 2 21 ILE 21 481 481 ILE ILE B . n D 2 22 ALA 22 482 482 ALA ALA B . n D 2 23 GLU 23 483 483 GLU GLU B . n D 2 24 GLY 24 484 484 GLY GLY B . n D 2 25 LEU 25 485 485 LEU LEU B . n D 2 26 ARG 26 486 486 ARG ARG B . n D 2 27 ALA 27 487 487 ALA ALA B . n D 2 28 LEU 28 488 488 LEU LEU B . n D 2 29 LEU 29 489 489 LEU LEU B . n D 2 30 ALA 30 490 490 ALA ALA B . n D 2 31 ARG 31 491 491 ARG ARG B . n D 2 32 SER 32 492 492 SER SER B . n D 2 33 HIS 33 493 493 HIS HIS B . n D 2 34 VAL 34 494 494 VAL VAL B . n D 2 35 GLU 35 495 495 GLU GLU B . n D 2 36 ARG 36 496 496 ARG ARG B . n D 2 37 THR 37 497 497 THR THR B . n D 2 38 THR 38 498 498 THR THR B . n D 2 39 ASP 39 499 499 ASP ASP B . n D 2 40 GLU 40 500 500 GLU GLU B . n D 2 41 GLY 41 501 501 GLY GLY B . n D 2 42 THR 42 502 502 THR THR B . n D 2 43 TRP 43 503 503 TRP TRP B . n D 2 44 VAL 44 504 504 VAL VAL B . n D 2 45 ALA 45 505 505 ALA ALA B . n D 2 46 GLY 46 506 506 GLY GLY B . n D 2 47 VAL 47 507 507 VAL VAL B . n D 2 48 PHE 48 508 508 PHE PHE B . n D 2 49 VAL 49 509 509 VAL VAL B . n D 2 50 TYR 50 510 510 TYR TYR B . n D 2 51 GLY 51 511 511 GLY GLY B . n D 2 52 GLY 52 512 512 GLY GLY B . n D 2 53 SER 53 513 513 SER SER B . n D 2 54 LYS 54 514 514 LYS LYS B . n D 2 55 THR 55 515 515 THR THR B . n D 2 56 SER 56 516 516 SER SER B . n D 2 57 LEU 57 517 517 LEU LEU B . n D 2 58 TYR 58 518 518 TYR TYR B . n D 2 59 ASN 59 519 519 ASN ASN B . n D 2 60 LEU 60 520 520 LEU LEU B . n D 2 61 ARG 61 521 521 ARG ARG B . n D 2 62 ARG 62 522 522 ARG ARG B . n D 2 63 GLY 63 523 523 GLY GLY B . n D 2 64 THR 64 524 524 THR THR B . n D 2 65 ALA 65 525 525 ALA ALA B . n D 2 66 LEU 66 526 526 LEU LEU B . n D 2 67 ALA 67 527 527 ALA ALA B . n D 2 68 ILE 68 528 528 ILE ILE B . n D 2 69 PRO 69 529 529 PRO PRO B . n D 2 70 GLN 70 530 530 GLN GLN B . n D 2 71 CYS 71 531 531 CYS CYS B . n D 2 72 ARG 72 532 532 ARG ARG B . n D 2 73 LEU 73 533 533 LEU LEU B . n D 2 74 THR 74 534 534 THR THR B . n D 2 75 PRO 75 535 535 PRO PRO B . n D 2 76 LEU 76 536 536 LEU LEU B . n D 2 77 SER 77 537 537 SER SER B . n D 2 78 ARG 78 538 538 ARG ARG B . n D 2 79 LEU 79 539 539 LEU LEU B . n D 2 80 PRO 80 540 540 PRO PRO B . n D 2 81 PHE 81 541 541 PHE PHE B . n D 2 82 GLY 82 542 542 GLY GLY B . n D 2 83 MET 83 543 543 MET MET B . n D 2 84 ALA 84 544 544 ALA ALA B . n D 2 85 PRO 85 545 545 PRO PRO B . n D 2 86 GLY 86 546 546 GLY GLY B . n D 2 87 PRO 87 547 547 PRO PRO B . n D 2 88 GLY 88 548 548 GLY GLY B . n D 2 89 PRO 89 549 549 PRO PRO B . n D 2 90 GLN 90 550 550 GLN GLN B . n D 2 91 PRO 91 551 551 PRO PRO B . n D 2 92 GLY 92 552 552 GLY GLY B . n D 2 93 PRO 93 553 553 PRO PRO B . n D 2 94 LEU 94 554 554 LEU LEU B . n D 2 95 ARG 95 555 555 ARG ARG B . n D 2 96 GLU 96 556 556 GLU GLU B . n D 2 97 SER 97 557 557 SER SER B . n D 2 98 ILE 98 558 558 ILE ILE B . n D 2 99 VAL 99 559 559 VAL VAL B . n D 2 100 CYS 100 560 560 CYS CYS B . n D 2 101 TYR 101 561 561 TYR TYR B . n D 2 102 PHE 102 562 562 PHE PHE B . n D 2 103 MET 103 563 563 MET MET B . n D 2 104 VAL 104 564 564 VAL VAL B . n D 2 105 PHE 105 565 565 PHE PHE B . n D 2 106 LEU 106 566 566 LEU LEU B . n D 2 107 GLN 107 567 567 GLN GLN B . n D 2 108 THR 108 568 568 THR THR B . n D 2 109 HIS 109 569 569 HIS HIS B . n D 2 110 ILE 110 570 570 ILE ILE B . n D 2 111 PHE 111 571 571 PHE PHE B . n D 2 112 ALA 112 572 572 ALA ALA B . n D 2 113 GLU 113 573 573 GLU GLU B . n D 2 114 VAL 114 574 574 VAL VAL B . n D 2 115 LEU 115 575 575 LEU LEU B . n D 2 116 LYS 116 576 576 LYS LYS B . n D 2 117 ASP 117 577 577 ASP ASP B . n D 2 118 ALA 118 578 578 ALA ALA B . n D 2 119 ILE 119 579 579 ILE ILE B . n D 2 120 LYS 120 580 580 LYS LYS B . n D 2 121 ASP 121 581 581 ASP ASP B . n D 2 122 LEU 122 582 582 LEU LEU B . n D 2 123 VAL 123 583 583 VAL VAL B . n D 2 124 MET 124 584 584 MET MET B . n D 2 125 THR 125 585 585 THR THR B . n D 2 126 LYS 126 586 586 LYS LYS B . n D 2 127 PRO 127 587 587 PRO PRO B . n D 2 128 ALA 128 588 588 ALA ALA B . n D 2 129 PRO 129 589 589 PRO PRO B . n D 2 130 THR 130 590 590 THR THR B . n D 2 131 CYS 131 591 591 CYS CYS B . n D 2 132 ASN 132 592 592 ASN ASN B . n D 2 133 ILE 133 593 593 ILE ILE B . n D 2 134 ARG 134 594 594 ARG ARG B . n D 2 135 VAL 135 595 595 VAL VAL B . n D 2 136 THR 136 596 596 THR THR B . n D 2 137 VAL 137 597 597 VAL VAL B . n D 2 138 CYS 138 598 598 CYS CYS B . n D 2 139 SER 139 599 599 SER SER B . n D 2 140 PHE 140 600 600 PHE PHE B . n D 2 141 ASP 141 601 601 ASP ASP B . n D 2 142 ASP 142 602 602 ASP ASP B . n D 2 143 GLY 143 603 603 GLY GLY B . n D 2 144 VAL 144 604 604 VAL VAL B . n D 2 145 ASP 145 605 605 ASP ASP B . n D 2 146 LEU 146 606 606 LEU LEU B . n D 2 147 PRO 147 607 607 PRO PRO B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 602 602 HOH HOH C . E 3 HOH 2 607 607 HOH HOH C . E 3 HOH 3 608 608 HOH HOH C . E 3 HOH 4 633 633 HOH HOH C . E 3 HOH 5 634 634 HOH HOH C . E 3 HOH 6 642 642 HOH HOH C . E 3 HOH 7 643 643 HOH HOH C . E 3 HOH 8 648 648 HOH HOH C . E 3 HOH 9 649 649 HOH HOH C . E 3 HOH 10 660 660 HOH HOH C . E 3 HOH 11 662 662 HOH HOH C . E 3 HOH 12 670 670 HOH HOH C . E 3 HOH 13 680 680 HOH HOH C . E 3 HOH 14 684 684 HOH HOH C . E 3 HOH 15 686 686 HOH HOH C . E 3 HOH 16 702 702 HOH HOH C . E 3 HOH 17 710 710 HOH HOH C . E 3 HOH 18 718 718 HOH HOH C . E 3 HOH 19 720 720 HOH HOH C . E 3 HOH 20 741 741 HOH HOH C . E 3 HOH 21 742 742 HOH HOH C . E 3 HOH 22 744 744 HOH HOH C . E 3 HOH 23 763 763 HOH HOH C . E 3 HOH 24 776 776 HOH HOH C . E 3 HOH 25 795 795 HOH HOH C . E 3 HOH 26 797 797 HOH HOH C . E 3 HOH 27 801 801 HOH HOH C . E 3 HOH 28 802 802 HOH HOH C . E 3 HOH 29 804 804 HOH HOH C . F 3 HOH 1 605 605 HOH HOH D . F 3 HOH 2 613 613 HOH HOH D . F 3 HOH 3 620 620 HOH HOH D . F 3 HOH 4 625 625 HOH HOH D . F 3 HOH 5 627 627 HOH HOH D . F 3 HOH 6 637 637 HOH HOH D . F 3 HOH 7 641 641 HOH HOH D . F 3 HOH 8 645 645 HOH HOH D . F 3 HOH 9 647 647 HOH HOH D . F 3 HOH 10 651 651 HOH HOH D . F 3 HOH 11 652 652 HOH HOH D . F 3 HOH 12 656 656 HOH HOH D . F 3 HOH 13 657 657 HOH HOH D . F 3 HOH 14 666 666 HOH HOH D . F 3 HOH 15 683 683 HOH HOH D . F 3 HOH 16 688 688 HOH HOH D . F 3 HOH 17 689 689 HOH HOH D . F 3 HOH 18 697 697 HOH HOH D . F 3 HOH 19 707 707 HOH HOH D . F 3 HOH 20 713 713 HOH HOH D . F 3 HOH 21 716 716 HOH HOH D . F 3 HOH 22 723 723 HOH HOH D . F 3 HOH 23 725 725 HOH HOH D . F 3 HOH 24 728 728 HOH HOH D . F 3 HOH 25 729 729 HOH HOH D . F 3 HOH 26 733 733 HOH HOH D . F 3 HOH 27 753 753 HOH HOH D . F 3 HOH 28 759 759 HOH HOH D . F 3 HOH 29 765 765 HOH HOH D . F 3 HOH 30 766 766 HOH HOH D . F 3 HOH 31 808 808 HOH HOH D . G 3 HOH 1 610 610 HOH HOH A . G 3 HOH 2 614 614 HOH HOH A . G 3 HOH 3 615 615 HOH HOH A . G 3 HOH 4 616 616 HOH HOH A . G 3 HOH 5 618 618 HOH HOH A . G 3 HOH 6 619 619 HOH HOH A . G 3 HOH 7 622 622 HOH HOH A . G 3 HOH 8 623 623 HOH HOH A . G 3 HOH 9 630 630 HOH HOH A . G 3 HOH 10 631 631 HOH HOH A . G 3 HOH 11 661 661 HOH HOH A . G 3 HOH 12 663 663 HOH HOH A . G 3 HOH 13 664 664 HOH HOH A . G 3 HOH 14 668 668 HOH HOH A . G 3 HOH 15 672 672 HOH HOH A . G 3 HOH 16 673 673 HOH HOH A . G 3 HOH 17 675 675 HOH HOH A . G 3 HOH 18 676 676 HOH HOH A . G 3 HOH 19 679 679 HOH HOH A . G 3 HOH 20 681 681 HOH HOH A . G 3 HOH 21 691 691 HOH HOH A . G 3 HOH 22 692 692 HOH HOH A . G 3 HOH 23 693 693 HOH HOH A . G 3 HOH 24 695 695 HOH HOH A . G 3 HOH 25 696 696 HOH HOH A . G 3 HOH 26 700 700 HOH HOH A . G 3 HOH 27 701 701 HOH HOH A . G 3 HOH 28 709 709 HOH HOH A . G 3 HOH 29 711 711 HOH HOH A . G 3 HOH 30 715 715 HOH HOH A . G 3 HOH 31 730 730 HOH HOH A . G 3 HOH 32 731 731 HOH HOH A . G 3 HOH 33 735 735 HOH HOH A . G 3 HOH 34 736 736 HOH HOH A . G 3 HOH 35 737 737 HOH HOH A . G 3 HOH 36 738 738 HOH HOH A . G 3 HOH 37 740 740 HOH HOH A . G 3 HOH 38 743 743 HOH HOH A . G 3 HOH 39 746 746 HOH HOH A . G 3 HOH 40 747 747 HOH HOH A . G 3 HOH 41 754 754 HOH HOH A . G 3 HOH 42 755 755 HOH HOH A . G 3 HOH 43 758 758 HOH HOH A . G 3 HOH 44 760 760 HOH HOH A . G 3 HOH 45 764 764 HOH HOH A . G 3 HOH 46 768 768 HOH HOH A . G 3 HOH 47 769 769 HOH HOH A . G 3 HOH 48 772 772 HOH HOH A . G 3 HOH 49 778 778 HOH HOH A . G 3 HOH 50 780 780 HOH HOH A . G 3 HOH 51 784 784 HOH HOH A . G 3 HOH 52 786 786 HOH HOH A . G 3 HOH 53 788 788 HOH HOH A . G 3 HOH 54 792 792 HOH HOH A . G 3 HOH 55 796 796 HOH HOH A . G 3 HOH 56 798 798 HOH HOH A . G 3 HOH 57 806 806 HOH HOH A . G 3 HOH 58 813 813 HOH HOH A . G 3 HOH 59 814 814 HOH HOH A . H 3 HOH 1 608 601 HOH HOH B . H 3 HOH 2 609 603 HOH HOH B . H 3 HOH 3 610 604 HOH HOH B . H 3 HOH 4 611 606 HOH HOH B . H 3 HOH 5 612 609 HOH HOH B . H 3 HOH 6 613 611 HOH HOH B . H 3 HOH 7 614 612 HOH HOH B . H 3 HOH 8 615 617 HOH HOH B . H 3 HOH 9 616 621 HOH HOH B . H 3 HOH 10 617 624 HOH HOH B . H 3 HOH 11 618 626 HOH HOH B . H 3 HOH 12 619 632 HOH HOH B . H 3 HOH 13 620 636 HOH HOH B . H 3 HOH 14 621 640 HOH HOH B . H 3 HOH 15 622 646 HOH HOH B . H 3 HOH 16 623 650 HOH HOH B . H 3 HOH 17 624 654 HOH HOH B . H 3 HOH 18 625 659 HOH HOH B . H 3 HOH 19 626 665 HOH HOH B . H 3 HOH 20 627 669 HOH HOH B . H 3 HOH 21 628 674 HOH HOH B . H 3 HOH 22 629 677 HOH HOH B . H 3 HOH 23 630 678 HOH HOH B . H 3 HOH 24 631 685 HOH HOH B . H 3 HOH 25 632 694 HOH HOH B . H 3 HOH 26 633 698 HOH HOH B . H 3 HOH 27 634 699 HOH HOH B . H 3 HOH 28 635 705 HOH HOH B . H 3 HOH 29 636 706 HOH HOH B . H 3 HOH 30 637 712 HOH HOH B . H 3 HOH 31 638 717 HOH HOH B . H 3 HOH 32 639 719 HOH HOH B . H 3 HOH 33 640 724 HOH HOH B . H 3 HOH 34 641 726 HOH HOH B . H 3 HOH 35 642 727 HOH HOH B . H 3 HOH 36 643 732 HOH HOH B . H 3 HOH 37 644 739 HOH HOH B . H 3 HOH 38 645 745 HOH HOH B . H 3 HOH 39 646 751 HOH HOH B . H 3 HOH 40 647 752 HOH HOH B . H 3 HOH 41 648 761 HOH HOH B . H 3 HOH 42 649 762 HOH HOH B . H 3 HOH 43 650 767 HOH HOH B . H 3 HOH 44 651 770 HOH HOH B . H 3 HOH 45 652 771 HOH HOH B . H 3 HOH 46 653 773 HOH HOH B . H 3 HOH 47 654 775 HOH HOH B . H 3 HOH 48 655 781 HOH HOH B . H 3 HOH 49 656 787 HOH HOH B . H 3 HOH 50 657 789 HOH HOH B . H 3 HOH 51 658 790 HOH HOH B . H 3 HOH 52 659 791 HOH HOH B . H 3 HOH 53 660 793 HOH HOH B . H 3 HOH 54 661 794 HOH HOH B . H 3 HOH 55 662 799 HOH HOH B . H 3 HOH 56 663 800 HOH HOH B . H 3 HOH 57 664 803 HOH HOH B . H 3 HOH 58 665 805 HOH HOH B . H 3 HOH 59 666 807 HOH HOH B . H 3 HOH 60 667 809 HOH HOH B . H 3 HOH 61 668 810 HOH HOH B . H 3 HOH 62 669 811 HOH HOH B . H 3 HOH 63 670 812 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' . ? 3 X-PLOR refinement 3.843 ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1B3T _cell.length_a 60.083 _cell.length_b 64.501 _cell.length_c 111.938 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B3T _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 1B3T _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.17 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;METHOD - HANGING DROP VAPOR DIFFUSION. RESERVOIR: 100 MM MES (PH 5.6) 20% PEG 4000, 500 MM NACL, 10 MM MGCL2, 10 MM DTT PROTEIN: 10MG/ML 1MM HEPES PH 7.2 1M NACL, 10 MM DTT DRY DNA RESUSPENDED IN THE PROTEIN CONTAINING SOLUTION IN MOLAR RATIO 1.5 (DSDNA) / 1.0 (EBNA1 DIMER) DROP: 50% PROTEIN/DNA SOLUTION 50% RESERVOIR SOLUTION CRYSTALLIZATION TEMPERATURE: 4 GEDREES C, vapor diffusion - hanging drop, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range 5.6-7.2 # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 HEPES ? ? ? 1 2 1 NACL ? ? ? 1 3 1 DTT ? ? ? 1 4 1 'PEG 4000' ? ? ? 1 5 1 MES ? ? ? 1 6 1 MGCL2 ? ? ? 1 7 2 'PEG 4000' ? ? ? 1 8 2 MES ? ? ? 1 9 2 NACL ? ? ? 1 10 2 MGCL2 ? ? ? 1 11 2 DTT ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 1994-05-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.922 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 _diffrn_source.pdbx_wavelength 0.922 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1B3T _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20. _reflns.d_resolution_high 2.1 _reflns.number_obs 25865 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.5 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 93.2 _reflns_shell.Rmerge_I_obs 0.121 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1B3T _refine.ls_number_reflns_obs 21158 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1000000 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 98.4 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.268 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10. _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1VHI _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2250 _refine_hist.pdbx_number_atoms_nucleic_acid 732 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 182 _refine_hist.number_atoms_total 3164 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.5 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.5 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 2.0 ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.5 ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.5 ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 3.0 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.29 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.239 _refine_ls_shell.percent_reflns_obs 97.1 _refine_ls_shell.R_factor_R_free 0.274 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 10.1 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 DNA-RNA-MULTI-ENDO.PARAM DNA-RNA-MULTI-ENDO.TOP 'X-RAY DIFFRACTION' 3 PARAM19.SOL TOP.H2O 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1B3T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1B3T _struct.title 'EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1B3T _struct_keywords.pdbx_keywords PROTEIN/DNA _struct_keywords.text 'NUCLEAR PROTEIN, PROTEIN-DNA COMPLEX, DNA-BINDING, ACTIVATOR, ORIGIN-BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP Q69477_9GAMA 2 ? ? Q69477 ? 2 PDB 1B3T 1 ? ? 1B3T ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1B3T A 1 ? 147 ? Q69477 23 ? 169 ? 461 607 2 1 1B3T B 1 ? 147 ? Q69477 23 ? 169 ? 461 607 3 2 1B3T C 1 ? 18 ? 1B3T 101 ? 118 ? 101 118 4 2 1B3T D 1 ? 18 ? 1B3T 201 ? 218 ? 201 218 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO C 16 ? ARG C 31 ? PRO A 476 ARG A 491 1 ? 16 HELX_P HELX_P2 2 LYS C 54 ? ALA C 67 ? LYS A 514 ALA A 527 1 ? 14 HELX_P HELX_P3 3 HIS C 109 ? MET C 124 ? HIS A 569 MET A 584 1 ? 16 HELX_P HELX_P4 4 THR C 130 ? ASN C 132 ? THR A 590 ASN A 592 5 ? 3 HELX_P HELX_P5 5 PRO D 16 ? ARG D 31 ? PRO B 476 ARG B 491 1 ? 16 HELX_P HELX_P6 6 LYS D 54 ? ALA D 67 ? LYS B 514 ALA B 527 1 ? 14 HELX_P HELX_P7 7 HIS D 109 ? THR D 125 ? HIS B 569 THR B 585 1 ? 17 HELX_P HELX_P8 8 THR D 130 ? ASN D 132 ? THR B 590 ASN B 592 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? C CYS 138 SG ? ? ? 1_555 D CYS 138 SG ? ? A CYS 598 B CYS 598 1_555 ? ? ? ? ? ? ? 2.456 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 101 D DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 101 D DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 101 D DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 17 N3 ? ? C DG 102 D DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 17 O2 ? ? C DG 102 D DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 17 N4 ? ? C DG 102 D DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 16 N3 ? ? C DG 103 D DC 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 16 O2 ? ? C DG 103 D DC 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 16 N4 ? ? C DG 103 D DC 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 104 D DT 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 104 D DT 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 14 N3 ? ? C DA 105 D DT 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 14 O4 ? ? C DA 105 D DT 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 106 D DC 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 106 D DC 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 106 D DC 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 12 N1 ? ? C DC 107 D DG 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 12 O6 ? ? C DC 107 D DG 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 12 N2 ? ? C DC 107 D DG 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 108 D DT 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 108 D DT 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 10 N1 ? ? C DT 109 D DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 10 N6 ? ? C DT 109 D DA 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 9 N3 ? ? C DA 110 D DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 9 O4 ? ? C DA 110 D DT 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 8 N1 ? ? C DT 111 D DA 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 8 N6 ? ? C DT 111 D DA 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 7 N3 ? ? C DG 112 D DC 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 7 O2 ? ? C DG 112 D DC 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 7 N4 ? ? C DG 112 D DC 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 113 D DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 113 D DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 113 D DG 206 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 5 N1 ? ? C DT 114 D DA 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 5 N6 ? ? C DT 114 D DA 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 4 N1 ? ? C DT 115 D DA 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 4 N6 ? ? C DT 115 D DA 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 3 N1 ? ? C DC 116 D DG 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 3 O6 ? ? C DC 116 D DG 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 3 N2 ? ? C DC 116 D DG 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 2 N1 ? ? C DC 117 D DG 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 2 O6 ? ? C DC 117 D DG 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 2 N2 ? ? C DC 117 D DG 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 1 N1 ? ? C DC 118 D DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 1 O6 ? ? C DC 118 D DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 1 N2 ? ? C DC 118 D DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? hydrog ? ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id C _pdbx_modification_feature.label_seq_id 138 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id D _pdbx_modification_feature.modified_residue_label_seq_id 138 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 598 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id B _pdbx_modification_feature.modified_residue_auth_seq_id 598 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 128 C . ? ALA 588 A PRO 129 C ? PRO 589 A 1 0.22 2 ALA 128 D . ? ALA 588 B PRO 129 D ? PRO 589 B 1 0.27 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR C 101 ? LEU C 106 ? TYR A 561 LEU A 566 A 2 ALA C 45 ? GLY C 51 ? ALA A 505 GLY A 511 A 3 ILE C 133 ? SER C 139 ? ILE A 593 SER A 599 B 1 TYR D 101 ? LEU D 106 ? TYR B 561 LEU B 566 B 2 ALA D 45 ? GLY D 51 ? ALA B 505 GLY B 511 B 3 ILE D 133 ? SER D 139 ? ILE B 593 SER B 599 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE C 102 ? O PHE A 562 N VAL C 49 ? N VAL A 509 A 2 3 O GLY C 46 ? O GLY A 506 N CYS C 138 ? N CYS A 598 B 1 2 O PHE D 102 ? O PHE B 562 N VAL D 49 ? N VAL B 509 B 2 3 O GLY D 46 ? O GLY B 506 N CYS D 138 ? N CYS B 598 # _pdbx_entry_details.entry_id 1B3T _pdbx_entry_details.compound_details ;EBNA1 ENCODED BY EBV B95-8 COMPRISES 641 AMINO ACIDS AND IS VERY STABLE DIMER BOTH IN SOLUTION AND WHEN BOUND TO 1 8 BP RECOGNITION SEQUENCE. DNA-BINDING AND DIMERIZATION DOMAIN HAVE BEEN LOCALIZED TO WITHIN RESIDUES 459-607. A FRAGMENT 459-607 PREVIOUSLY DETERMINED TO BE ACTIVE FOR SEQUENCE-SPECIFIC DNA BINDING. EBNA1 IS FOUND TO HAVE STRUCTURAL, BUT NOT SEQUENCE, HOMOLOGY WITH THE DNA-BINDING DOMAIN OF THE E2 PROTEIN PDB ENTRY 2BOP. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 582 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 582 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 582 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 130.90 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 15.60 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id D _pdbx_validate_planes.auth_seq_id 210 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.060 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1B3T 'double helix' 1B3T 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 18 1_555 -0.556 -0.502 -0.113 6.018 11.280 -4.974 1 C_DG101:DC218_D C 101 ? D 218 ? 19 1 1 A DG 2 1_555 B DC 17 1_555 -0.184 -0.164 0.000 4.862 -0.743 -0.795 2 C_DG102:DC217_D C 102 ? D 217 ? 19 1 1 A DG 3 1_555 B DC 16 1_555 -0.327 -0.052 -0.427 0.277 -5.135 -2.454 3 C_DG103:DC216_D C 103 ? D 216 ? 19 1 1 A DA 4 1_555 B DT 15 1_555 0.317 -0.049 -0.279 6.803 -7.008 1.340 4 C_DA104:DT215_D C 104 ? D 215 ? 20 1 1 A DA 5 1_555 B DT 14 1_555 -0.215 -0.300 -0.058 8.849 -14.010 7.484 5 C_DA105:DT214_D C 105 ? D 214 ? 20 1 1 A DG 6 1_555 B DC 13 1_555 -0.120 -0.031 -0.079 13.102 -7.269 4.310 6 C_DG106:DC213_D C 106 ? D 213 ? 19 1 1 A DC 7 1_555 B DG 12 1_555 0.446 0.021 -0.538 21.398 -6.717 -2.071 7 C_DC107:DG212_D C 107 ? D 212 ? 19 1 1 A DA 8 1_555 B DT 11 1_555 0.043 0.111 -0.159 1.918 -7.922 -3.760 8 C_DA108:DT211_D C 108 ? D 211 ? 20 1 1 A DT 9 1_555 B DA 10 1_555 0.311 -0.082 0.143 19.939 -13.273 2.933 9 C_DT109:DA210_D C 109 ? D 210 ? 20 1 1 A DA 10 1_555 B DT 9 1_555 -0.146 0.098 -0.086 -16.481 -10.406 4.721 10 C_DA110:DT209_D C 110 ? D 209 ? 20 1 1 A DT 11 1_555 B DA 8 1_555 -0.272 0.106 -0.180 -4.639 -9.808 -3.601 11 C_DT111:DA208_D C 111 ? D 208 ? 20 1 1 A DG 12 1_555 B DC 7 1_555 -0.582 -0.041 -0.436 -15.205 -8.747 -2.856 12 C_DG112:DC207_D C 112 ? D 207 ? 19 1 1 A DC 13 1_555 B DG 6 1_555 -0.027 0.000 0.306 -16.619 -11.031 2.462 13 C_DC113:DG206_D C 113 ? D 206 ? 19 1 1 A DT 14 1_555 B DA 5 1_555 0.158 -0.112 -0.014 -16.247 -15.644 6.302 14 C_DT114:DA205_D C 114 ? D 205 ? 20 1 1 A DT 15 1_555 B DA 4 1_555 -0.472 -0.083 -0.183 -10.983 -10.519 -3.845 15 C_DT115:DA204_D C 115 ? D 204 ? 20 1 1 A DC 16 1_555 B DG 3 1_555 -0.021 0.016 -0.382 -0.834 -4.480 -1.458 16 C_DC116:DG203_D C 116 ? D 203 ? 19 1 1 A DC 17 1_555 B DG 2 1_555 0.018 -0.037 0.142 -3.436 2.477 -3.886 17 C_DC117:DG202_D C 117 ? D 202 ? 19 1 1 A DC 18 1_555 B DG 1 1_555 0.543 0.143 0.337 -5.438 3.419 5.084 18 C_DC118:DG201_D C 118 ? D 201 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 18 1_555 A DG 2 1_555 B DC 17 1_555 -1.082 0.098 3.459 -4.032 7.955 34.445 -1.095 1.136 3.495 13.162 6.672 35.547 1 CC_DG101DG102:DC217DC218_DD C 101 ? D 218 ? C 102 ? D 217 ? 1 A DG 2 1_555 B DC 17 1_555 A DG 3 1_555 B DC 16 1_555 -0.186 -0.823 3.419 2.173 6.552 32.078 -2.607 0.711 3.175 11.689 -3.876 32.793 2 CC_DG102DG103:DC216DC217_DD C 102 ? D 217 ? C 103 ? D 216 ? 1 A DG 3 1_555 B DC 16 1_555 A DA 4 1_555 B DT 15 1_555 -0.122 -0.175 3.099 -0.874 4.805 37.361 -0.860 0.081 3.056 7.462 1.357 37.667 3 CC_DG103DA104:DT215DC216_DD C 103 ? D 216 ? C 104 ? D 215 ? 1 A DA 4 1_555 B DT 15 1_555 A DA 5 1_555 B DT 14 1_555 0.208 0.088 3.342 -2.450 7.356 33.221 -1.047 -0.754 3.263 12.652 4.214 34.089 4 CC_DA104DA105:DT214DT215_DD C 104 ? D 215 ? C 105 ? D 214 ? 1 A DA 5 1_555 B DT 14 1_555 A DG 6 1_555 B DC 13 1_555 0.150 0.339 3.327 -1.534 14.079 25.727 -2.510 -0.643 3.080 28.988 3.159 29.310 5 CC_DA105DG106:DC213DT214_DD C 105 ? D 214 ? C 106 ? D 213 ? 1 A DG 6 1_555 B DC 13 1_555 A DC 7 1_555 B DG 12 1_555 -1.466 0.302 3.025 0.347 7.351 37.300 -0.410 2.293 3.015 11.358 -0.536 37.994 6 CC_DG106DC107:DG212DC213_DD C 106 ? D 213 ? C 107 ? D 212 ? 1 A DC 7 1_555 B DG 12 1_555 A DA 8 1_555 B DT 11 1_555 0.403 -0.462 3.955 0.600 7.966 35.785 -2.042 -0.543 3.775 12.768 -0.961 36.637 7 CC_DC107DA108:DT211DG212_DD C 107 ? D 212 ? C 108 ? D 211 ? 1 A DA 8 1_555 B DT 11 1_555 A DT 9 1_555 B DA 10 1_555 1.020 -0.655 2.848 -2.562 4.789 29.018 -2.143 -2.461 2.611 9.454 5.057 29.511 8 CC_DA108DT109:DA210DT211_DD C 108 ? D 211 ? C 109 ? D 210 ? 1 A DT 9 1_555 B DA 10 1_555 A DA 10 1_555 B DT 9 1_555 -0.080 0.245 4.007 1.094 -6.238 48.679 0.869 0.197 3.947 -7.530 -1.321 49.065 9 CC_DT109DA110:DT209DA210_DD C 109 ? D 210 ? C 110 ? D 209 ? 1 A DA 10 1_555 B DT 9 1_555 A DT 11 1_555 B DA 8 1_555 -0.904 -0.497 3.037 0.931 4.063 27.409 -1.933 2.092 2.903 8.512 -1.951 27.718 10 CC_DA110DT111:DA208DT209_DD C 110 ? D 209 ? C 111 ? D 208 ? 1 A DT 11 1_555 B DA 8 1_555 A DG 12 1_555 B DC 7 1_555 -0.608 -0.322 3.598 -0.425 10.155 36.125 -1.951 0.886 3.395 15.990 0.669 37.481 11 CC_DT111DG112:DC207DA208_DD C 111 ? D 208 ? C 112 ? D 207 ? 1 A DG 12 1_555 B DC 7 1_555 A DC 13 1_555 B DG 6 1_555 1.321 0.339 3.424 -5.044 5.514 38.402 -0.176 -2.598 3.248 8.287 7.581 39.096 12 CC_DG112DC113:DG206DC207_DD C 112 ? D 207 ? C 113 ? D 206 ? 1 A DC 13 1_555 B DG 6 1_555 A DT 14 1_555 B DA 5 1_555 -0.243 0.304 3.430 3.250 15.204 26.273 -2.686 1.161 3.091 30.308 -6.479 30.459 13 CC_DC113DT114:DA205DG206_DD C 113 ? D 206 ? C 114 ? D 205 ? 1 A DT 14 1_555 B DA 5 1_555 A DT 15 1_555 B DA 4 1_555 -0.190 0.077 3.261 0.722 8.470 31.427 -1.345 0.466 3.169 15.290 -1.303 32.529 14 CC_DT114DT115:DA204DA205_DD C 114 ? D 205 ? C 115 ? D 204 ? 1 A DT 15 1_555 B DA 4 1_555 A DC 16 1_555 B DG 3 1_555 -0.054 -0.374 3.054 0.273 3.526 34.358 -1.136 0.129 3.002 5.950 -0.460 34.534 15 CC_DT115DC116:DG203DA204_DD C 115 ? D 204 ? C 116 ? D 203 ? 1 A DC 16 1_555 B DG 3 1_555 A DC 17 1_555 B DG 2 1_555 -0.006 -0.628 3.433 -4.125 6.343 32.659 -2.168 -0.692 3.234 11.095 7.216 33.500 16 CC_DC116DC117:DG202DG203_DD C 116 ? D 203 ? C 117 ? D 202 ? 1 A DC 17 1_555 B DG 2 1_555 A DC 18 1_555 B DG 1 1_555 1.380 0.070 3.474 2.932 3.844 40.579 -0.354 -1.629 3.553 5.519 -4.209 40.854 17 CC_DC117DC118:DG201DG202_DD C 117 ? D 202 ? C 118 ? D 201 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1VHI _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 1B3T _atom_sites.fract_transf_matrix[1][1] 0.016644 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015504 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008933 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_