HEADER GUANINE NUCLEOTIDE EXCHANGE FACTOR 20-JAN-99 1B64 TITLE SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMAIN TITLE 2 FROM HUMAN ELONGATION FACTOR-ONE BETA, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR 1-BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GUANINE EXCHANGE FACTOR DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS GUANINE NUCLEOTIDE EXCHANGE FACTOR, G-PROTEIN, TRANSLATION ELONGATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.M.J.PEREZ,G.SIEGAL,J.KRIEK,K.HARD,J.DIJK,G.W.CANTERS,W.MOLLER REVDAT 3 16-FEB-22 1B64 1 REMARK REVDAT 2 24-FEB-09 1B64 1 VERSN REVDAT 1 18-MAY-99 1B64 0 JRNL AUTH J.M.PEREZ,G.SIEGAL,J.KRIEK,K.HARD,J.DIJK,G.W.CANTERS, JRNL AUTH 2 W.MOLLER JRNL TITL THE SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE JRNL TITL 2 DOMAIN OF HUMAN ELONGATION FACTOR 1BETA REVEALS A STRIKING JRNL TITL 3 RESEMBLANCE TO THAT OF EF-TS FROM ESCHERICHIA COLI. JRNL REF STRUCTURE FOLD.DES. V. 7 217 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10368288 JRNL DOI 10.1016/S0969-2126(99)80027-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.PEREZ,J.KRIEK,J.DIJK,W.MOLLER,G.SIEGAL,K.HARD, REMARK 1 AUTH 2 A.P.KALVERDA,G.W.CANTERS REMARK 1 TITL 1H, 15N AND 13C CHEMICAL SHIFT ASSIGNMENT OF THE GUANINE REMARK 1 TITL 2 NUCLEOTIDE EXCHANGE DOMAIN OF HUMAN ELONGATION FACTOR-ONE REMARK 1 TITL 3 BETA REMARK 1 REF J.BIOMOL.NMR V. 12 467 1998 REMARK 1 REFN ISSN 0925-2738 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : GUNTERT,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1B64 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171496. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 100 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 95% H2O AND 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : VARIOUS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA V.1.4 V.1.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY OF 13C, 15N-LABELED EF-1BETA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 70 HG1 THR A 74 1.49 REMARK 500 O THR A 66 H GLU A 70 1.49 REMARK 500 O LEU A 69 H ILE A 73 1.50 REMARK 500 O MET A 21 H GLU A 25 1.53 REMARK 500 O LYS A 23 H CYS A 27 1.53 REMARK 500 O LYS A 13 H GLN A 81 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 -83.18 -48.96 REMARK 500 1 ALA A 4 61.71 38.99 REMARK 500 1 THR A 19 102.54 -52.74 REMARK 500 1 ASP A 20 102.24 -53.17 REMARK 500 1 TYR A 48 164.84 57.49 REMARK 500 1 LEU A 53 66.91 -102.45 REMARK 500 1 ASP A 61 -79.61 62.77 REMARK 500 1 ASP A 62 26.67 -142.07 REMARK 500 1 TYR A 79 -45.48 -151.19 REMARK 500 1 SER A 82 112.97 -178.69 REMARK 500 1 ALA A 87 173.62 171.86 REMARK 500 2 LEU A 2 75.64 -107.61 REMARK 500 2 ALA A 4 83.37 70.10 REMARK 500 2 ASP A 11 89.32 -150.12 REMARK 500 2 ASP A 16 -174.28 168.09 REMARK 500 2 THR A 19 88.22 -67.23 REMARK 500 2 VAL A 46 -74.28 -111.62 REMARK 500 2 TYR A 48 -161.55 53.50 REMARK 500 2 THR A 66 27.54 -162.90 REMARK 500 2 TYR A 79 -44.03 -151.80 REMARK 500 2 SER A 82 115.65 -179.93 REMARK 500 2 ALA A 87 167.78 176.01 REMARK 500 3 ALA A 4 123.24 84.50 REMARK 500 3 ASP A 16 -171.85 -175.16 REMARK 500 3 THR A 19 101.21 -50.56 REMARK 500 3 ASP A 20 96.94 -52.74 REMARK 500 3 LEU A 53 71.44 -103.28 REMARK 500 3 TYR A 79 -44.91 -147.71 REMARK 500 3 SER A 82 114.46 173.43 REMARK 500 3 ALA A 87 171.69 177.51 REMARK 500 4 ALA A 4 111.12 76.06 REMARK 500 4 ASP A 16 -170.61 -174.88 REMARK 500 4 THR A 19 98.27 -60.75 REMARK 500 4 ASP A 20 104.32 -40.70 REMARK 500 4 SER A 40 141.96 -170.80 REMARK 500 4 VAL A 46 -62.17 -91.18 REMARK 500 4 TYR A 48 -38.22 171.10 REMARK 500 4 ASP A 62 26.08 -146.51 REMARK 500 4 LYS A 63 -70.04 -96.05 REMARK 500 4 ALA A 75 -31.99 -39.53 REMARK 500 4 TYR A 79 -44.10 -145.84 REMARK 500 4 SER A 82 115.27 170.09 REMARK 500 4 ALA A 87 170.41 179.84 REMARK 500 5 ALA A 4 84.24 80.80 REMARK 500 5 ASP A 16 -174.39 178.64 REMARK 500 5 ASP A 20 154.82 -44.90 REMARK 500 5 ALA A 22 -70.64 -60.35 REMARK 500 5 VAL A 46 -155.89 -90.41 REMARK 500 5 TYR A 48 -33.84 175.94 REMARK 500 5 LEU A 53 68.45 -115.69 REMARK 500 REMARK 500 THIS ENTRY HAS 233 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: GEF REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: INVOLVED WITH GEF REACTION ON EF-1APHA. DBREF 1B64 A 2 91 UNP P24534 EF1B_HUMAN 135 224 SEQRES 1 A 91 MET LEU VAL ALA LYS SER SER ILE LEU LEU ASP VAL LYS SEQRES 2 A 91 PRO TRP ASP ASP GLU THR ASP MET ALA LYS LEU GLU GLU SEQRES 3 A 91 CYS VAL ARG SER ILE GLN ALA ASP GLY LEU VAL TRP GLY SEQRES 4 A 91 SER SER LYS LEU VAL PRO VAL GLY TYR GLY ILE LYS LYS SEQRES 5 A 91 LEU GLN ILE GLN CYS VAL VAL GLU ASP ASP LYS VAL GLY SEQRES 6 A 91 THR ASP MET LEU GLU GLU GLN ILE THR ALA PHE GLU ASP SEQRES 7 A 91 TYR VAL GLN SER MET ASP VAL ALA ALA PHE ASN LYS ILE HELIX 1 H1 ALA A 22 SER A 30 1 9 HELIX 2 H2 THR A 66 THR A 74 1 9 SHEET 1 S1 4 VAL A 37 PRO A 45 0 SHEET 2 S1 4 ILE A 50 GLN A 56 -1 SHEET 3 S1 4 LYS A 5 PRO A 14 -1 SHEET 4 S1 4 VAL A 80 LYS A 90 -1 SITE 1 GEF 1 TYR A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1