HEADER HYDROLASE 24-JAN-99 1B7N TITLE VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (LYSOZYME); COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.17; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS MUTANT STABILITY, HUMAN LYSOZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAKANO,M.OTA,K.OGASAHARA,Y.YAMAGATA,K.NISHIKAWA,K.YUTANI REVDAT 6 03-APR-24 1B7N 1 REMARK REVDAT 5 27-DEC-23 1B7N 1 REMARK REVDAT 4 03-NOV-21 1B7N 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1B7N 1 VERSN REVDAT 2 29-DEC-99 1B7N 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 27-JAN-99 1B7N 0 JRNL AUTH K.TAKANO,M.OTA,K.OGASAHARA,Y.YAMAGATA,K.NISHIKAWA,K.YUTANI JRNL TITL EXPERIMENTAL VERIFICATION OF THE 'STABILITY PROFILE OF JRNL TITL 2 MUTANT PROTEIN' (SPMP) DATA USING MUTANT HUMAN LYSOZYMES. JRNL REF PROTEIN ENG. V. 12 663 1999 JRNL REFN ISSN 0269-2139 JRNL PMID 10469827 JRNL DOI 10.1093/PROTEIN/12.8.663 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.YAMAGATA,M.KUBOTA,Y.SUMIKAWA,J.FUNAHASHI,K.TAKANO,S.FUJII, REMARK 1 AUTH 2 K.YUTANI REMARK 1 TITL CONTRIBUTION OF HYDROGEN BONDS TO THE CONFORMATIONAL REMARK 1 TITL 2 STABILITY OF HUMAN LYSOZYME: CALORIMETRY AND X-RAY ANALYSIS REMARK 1 TITL 3 OF SIX TYROSINE->PHENYLALANINE MUTANTS REMARK 1 REF BIOCHEMISTRY V. 37 9355 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.TAKANO,Y.YAMAGATA,S.FUJII,K.YUTANI REMARK 1 TITL CONTRIBUTION OF HYDROPHOBIC EFFECT TO THE STABILITY OF HUMAN REMARK 1 TITL 2 LYSOZYME: CALORIMETRIC STUDIES AND X-RAY STRUCTURAL ANALYSES REMARK 1 TITL 3 OF THE NINE VALINE TO ALANINE MUTANTS REMARK 1 REF BIOCHEMISTRY V. 36 688 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.TAKANO,J.FUNAHASHI,Y.YAMAGATA,S.FUJII,K.YUTANI REMARK 1 TITL CONTRIBUTION OF WATER MOLECULES IN THE INTERIOR OF A PROTEIN REMARK 1 TITL 2 TO THE CONFORMATIONAL STABILITY REMARK 1 REF J.MOL.BIOL. V. 274 132 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.TAKANO,Y.YAMAGATA,K.YUTANI REMARK 1 TITL A GENERAL RULE FOR THE RELATIONSHIP BETWEEN HYDROPHOBIC REMARK 1 TITL 2 EFFECT AND CONFORMATIONAL STABILITY OF A PROTEIN: STABILITY REMARK 1 TITL 3 AND STRUCTURE OF A SERIES OF HYDROPHOBIC MUTANTS OF HUMAN REMARK 1 TITL 4 LYSOZYME REMARK 1 REF J.MOL.BIOL. V. 280 749 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.TAKANO,K.OGASAWAHA,H.KANEDA,Y.YAMAGATA,S.FUJII,E.KANAYA, REMARK 1 AUTH 2 M.KIKUCHI,M.OOBATAKE,K.YUTANI REMARK 1 TITL CONTRIBUTION OF HYDROPHOBIC RESIDUES TO THE STABILITY OF REMARK 1 TITL 2 HUMAN LYSOZYME: CALORIMETRIC STUDIES AND X-RAY STRUCTURAL REMARK 1 TITL 3 ANALYSIS OF THE FIVE ISOLEUCINE TO VALINE MUTANTS REMARK 1 REF J.MOL.BIOL. V. 254 62 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 9607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 976 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.490 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-99. REMARK 100 THE DEPOSITION ID IS D_1000000354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROCESS REMARK 200 DATA SCALING SOFTWARE : PROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: WILD-TYPE HUMAN LYSOZYME REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.31000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.29000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 16.29000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 82 O HOH A 192 1.07 REMARK 500 CG ARG A 119 O HOH A 150 1.19 REMARK 500 CD ARG A 119 O HOH A 150 1.24 REMARK 500 O ASN A 88 O HOH A 133 1.29 REMARK 500 O HOH A 362 O HOH A 396 1.30 REMARK 500 O HOH A 319 O HOH A 350 1.32 REMARK 500 O HOH A 220 O HOH A 243 1.35 REMARK 500 CD ARG A 115 O HOH A 136 1.36 REMARK 500 N LYS A 1 O HOH A 147 1.38 REMARK 500 NE ARG A 119 O HOH A 150 1.39 REMARK 500 CG LYS A 13 O HOH A 373 1.40 REMARK 500 O PRO A 103 O HOH A 178 1.46 REMARK 500 CG ARG A 122 O HOH A 276 1.47 REMARK 500 CB ALA A 111 O HOH A 152 1.50 REMARK 500 CD1 TRP A 109 O HOH A 338 1.56 REMARK 500 NZ LYS A 1 O HOH A 188 1.58 REMARK 500 O HIS A 78 O HOH A 355 1.62 REMARK 500 CG2 ILE A 56 O HOH A 140 1.63 REMARK 500 OD2 ASP A 49 O HOH A 285 1.65 REMARK 500 OD2 ASP A 91 O HOH A 385 1.66 REMARK 500 OH TYR A 45 O HOH A 363 1.66 REMARK 500 NH2 ARG A 21 O HOH A 343 1.66 REMARK 500 O THR A 70 O HOH A 153 1.69 REMARK 500 C PRO A 103 O HOH A 178 1.72 REMARK 500 ND2 ASN A 66 O HOH A 131 1.73 REMARK 500 OD1 ASP A 87 O HOH A 147 1.77 REMARK 500 NE ARG A 115 O HOH A 136 1.78 REMARK 500 NH2 ARG A 50 O HOH A 302 1.83 REMARK 500 OH TYR A 20 O HOH A 331 1.85 REMARK 500 C ASN A 88 O HOH A 133 1.86 REMARK 500 O VAL A 130 O HOH A 249 1.86 REMARK 500 O HOH A 301 O HOH A 369 1.87 REMARK 500 O HOH A 334 O HOH A 394 1.88 REMARK 500 CB SER A 82 O HOH A 192 1.89 REMARK 500 O ALA A 90 O HOH A 182 1.90 REMARK 500 N SER A 80 O HOH A 132 1.91 REMARK 500 N ILE A 56 O HOH A 140 1.92 REMARK 500 NH2 ARG A 122 O HOH A 175 1.95 REMARK 500 CB CYS A 77 O HOH A 288 1.96 REMARK 500 NH2 ARG A 115 O HOH A 136 1.98 REMARK 500 NE1 TRP A 109 O HOH A 186 2.00 REMARK 500 N TYR A 20 O HOH A 180 2.03 REMARK 500 N VAL A 110 O HOH A 233 2.05 REMARK 500 CD1 LEU A 35 O HOH A 165 2.05 REMARK 500 CA ILE A 56 O HOH A 140 2.06 REMARK 500 O HOH A 340 O HOH A 393 2.07 REMARK 500 CA ILE A 89 O HOH A 133 2.08 REMARK 500 CZ ARG A 115 O HOH A 136 2.09 REMARK 500 O TRP A 34 O HOH A 202 2.09 REMARK 500 OD1 ASP A 91 O HOH A 385 2.10 REMARK 500 REMARK 500 THIS ENTRY HAS 61 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 14 O HOH A 168 2565 0.79 REMARK 500 CZ ARG A 14 O HOH A 168 2565 1.12 REMARK 500 NH1 ARG A 113 O HOH A 255 2554 1.19 REMARK 500 ND2 ASN A 118 O HOH A 246 4557 1.32 REMARK 500 OE1 GLN A 117 O HOH A 326 4557 1.43 REMARK 500 NH1 ARG A 21 NE ARG A 41 4557 1.54 REMARK 500 NE ARG A 14 O HOH A 168 2565 1.74 REMARK 500 CE1 HIS A 78 O HOH A 296 1556 1.81 REMARK 500 ND1 HIS A 78 O HOH A 296 1556 1.89 REMARK 500 NH1 ARG A 113 O HOH A 351 2554 1.91 REMARK 500 O HOH A 222 O HOH A 241 1554 1.92 REMARK 500 OE1 GLN A 86 NE ARG A 107 4457 1.94 REMARK 500 O HOH A 250 O HOH A 387 4457 1.98 REMARK 500 NE2 HIS A 78 O HOH A 238 4457 1.99 REMARK 500 NH2 ARG A 115 O HOH A 270 2554 2.01 REMARK 500 O HOH A 308 O HOH A 384 1556 2.02 REMARK 500 CZ ARG A 113 O HOH A 255 2554 2.05 REMARK 500 OG SER A 24 O HOH A 371 4557 2.05 REMARK 500 O HOH A 172 O HOH A 322 4456 2.05 REMARK 500 NH2 ARG A 122 O HOH A 258 4557 2.09 REMARK 500 CD GLN A 117 O HOH A 326 4557 2.10 REMARK 500 CB SER A 24 O HOH A 371 4557 2.10 REMARK 500 CG ARG A 122 O HOH A 206 4557 2.14 REMARK 500 NH1 ARG A 122 O HOH A 258 4557 2.14 REMARK 500 OG SER A 82 CG2 ILE A 106 4457 2.16 REMARK 500 O HOH A 308 O HOH A 381 1556 2.18 REMARK 500 OD2 ASP A 102 O HOH A 210 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 5 -72.44 -40.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 61 O REMARK 620 2 HOH A 158 O 155.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 601 DBREF 1B7N A 1 130 UNP P61626 LYSC_HUMAN 19 148 SEQADV 1B7N LEU A 35 UNP P61626 GLU 53 ENGINEERED MUTATION SEQRES 1 A 130 LYS VAL PHE GLU ARG CYS GLU LEU ALA ARG THR LEU LYS SEQRES 2 A 130 ARG LEU GLY MET ASP GLY TYR ARG GLY ILE SER LEU ALA SEQRES 3 A 130 ASN TRP MET CYS LEU ALA LYS TRP LEU SER GLY TYR ASN SEQRES 4 A 130 THR ARG ALA THR ASN TYR ASN ALA GLY ASP ARG SER THR SEQRES 5 A 130 ASP TYR GLY ILE PHE GLN ILE ASN SER ARG TYR TRP CYS SEQRES 6 A 130 ASN ASP GLY LYS THR PRO GLY ALA VAL ASN ALA CYS HIS SEQRES 7 A 130 LEU SER CYS SER ALA LEU LEU GLN ASP ASN ILE ALA ASP SEQRES 8 A 130 ALA VAL ALA CYS ALA LYS ARG VAL VAL ARG ASP PRO GLN SEQRES 9 A 130 GLY ILE ARG ALA TRP VAL ALA TRP ARG ASN ARG CYS GLN SEQRES 10 A 130 ASN ARG ASP VAL ARG GLN TYR VAL GLN GLY CYS GLY VAL HET NA A 601 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *267(H2 O) HELIX 1 1 ARG A 5 ARG A 14 1 10 HELIX 2 2 TYR A 20 GLY A 22 5 3 HELIX 3 3 LEU A 25 SER A 36 1 12 HELIX 4 4 CYS A 81 LEU A 85 5 5 HELIX 5 5 ALA A 90 VAL A 100 1 11 HELIX 6 6 GLY A 105 ALA A 108 5 4 HELIX 7 7 VAL A 110 ARG A 115 1 6 HELIX 8 8 ARG A 122 TYR A 124 5 3 SHEET 1 A 2 THR A 43 ASN A 46 0 SHEET 2 A 2 SER A 51 TYR A 54 -1 N ASP A 53 O ASN A 44 SSBOND 1 CYS A 6 CYS A 128 1555 1555 2.02 SSBOND 2 CYS A 30 CYS A 116 1555 1555 2.03 SSBOND 3 CYS A 65 CYS A 81 1555 1555 2.04 SSBOND 4 CYS A 77 CYS A 95 1555 1555 2.02 LINK O SER A 61 NA NA A 601 1554 1555 1.82 LINK O HOH A 158 NA NA A 601 1554 1555 2.47 SITE 1 AC1 7 SER A 61 ARG A 62 CYS A 65 ALA A 73 SITE 2 AC1 7 VAL A 74 HOH A 158 HOH A 198 CRYST1 56.620 61.430 32.580 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017662 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030694 0.00000