HEADER LIGASE 26-JAN-99 1B7Y TITLE PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINYL-ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PHENYLALANYL-TRNA SYNTHETASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHERS; COMPND 5 EC: 6.1.1.20; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (PHENYLALANYL-TRNA SYNTHETASE); COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PHERS; COMPND 10 EC: 6.1.1.20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 CELLULAR_LOCATION: CYTOPLASM; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 7 ORGANISM_TAXID: 274; SOURCE 8 CELLULAR_LOCATION: CYTOPLASM KEYWDS ENZYME, TRNA SYNTHETASE, ALPHA/BETA HOMODIMER, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.RESHETNIKOVA,N.MOOR,O.LAVRIK,D.G.VASSYLYEV REVDAT 5 09-AUG-23 1B7Y 1 REMARK LINK REVDAT 4 15-FEB-17 1B7Y 1 REMARK REVDAT 3 13-JUL-11 1B7Y 1 VERSN REVDAT 2 24-FEB-09 1B7Y 1 VERSN REVDAT 1 26-JAN-00 1B7Y 0 JRNL AUTH L.RESHETNIKOVA,N.MOOR,O.LAVRIK,D.G.VASSYLYEV JRNL TITL CRYSTAL STRUCTURES OF PHENYLALANYL-TRNA SYNTHETASE COMPLEXED JRNL TITL 2 WITH PHENYLALANINE AND A PHENYLALANYL-ADENYLATE ANALOGUE. JRNL REF J.MOL.BIOL. V. 287 555 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10092459 JRNL DOI 10.1006/JMBI.1999.2617 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.GOLDGUR,L.MOSYAK,L.RESHETNIKOVA,V.ANKILOVA,O.LAVRIK, REMARK 1 AUTH 2 S.KHODYREVA,M.SAFRO REMARK 1 TITL THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM REMARK 1 TITL 2 THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE. REMARK 1 REF STRUCTURE V. 5 59 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 9016717 REMARK 1 DOI 10.1016/S0969-2126(97)00166-4 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.MOSYAK,L.RESHETNIKOVA,Y.GOLDGUR,M.DELARUE,M.G.SAFRO REMARK 1 TITL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS REMARK 1 TITL 2 THERMOPHILUS REMARK 1 REF NATURE NEW BIOL. V. 2 537 1995 REMARK 1 REFN ISSN 0369-4887 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 0.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 81613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4000 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8892 REMARK 3 BIN R VALUE (WORKING SET) : 0.4100 REMARK 3 BIN FREE R VALUE : 0.4300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 453 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8166 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.720 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.700 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.200 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.500 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARNAH1E.DNA REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPNAH1E.DNA REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-99. REMARK 100 THE DEPOSITION ID IS D_1000000380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81613 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1PYS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING-DROP TECHNIQUE AT 4O C WITH REMARK 280 (NH4)2SO4 AS PRECIPITANT. EACH DROPLET OF THE PHENYLALANYL-TRNA REMARK 280 SYNTHETASE SOLUTION (10 MICROLITERS) AT PROTEIN CONCENTRATION OF REMARK 280 3 TO 5 MG PER ML IN 20 MM IMIDASOL-HCL BUFFER (PH 7.8), 1 MM REMARK 280 MGCL2, 1 MM NAN3 AND 15% SATURATED (NH4)2SO4 IN THE SAME BUFFER. REMARK 280 CRYSTALS APPEARED AFTER ONE TO TWO WEEKS AND GREW UP TO THE REMARK 280 MAXIMAL DIMENSIONS OF 0.4X0.4X0.25 MM IN A FEW WEEKS, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 313K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.73333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.73333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 80190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 GLN A 10 REMARK 465 ASN A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 LYS A 19 REMARK 465 ALA A 20 REMARK 465 LEU A 21 REMARK 465 LYS A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 TYR A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 THR A 33 REMARK 465 GLN A 34 REMARK 465 GLU A 35 REMARK 465 MET A 36 REMARK 465 LYS A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 LEU A 42 REMARK 465 PRO A 43 REMARK 465 LEU A 44 REMARK 465 GLU A 45 REMARK 465 GLU A 46 REMARK 465 ARG A 47 REMARK 465 ARG A 48 REMARK 465 LYS A 49 REMARK 465 ARG A 50 REMARK 465 GLY A 51 REMARK 465 GLN A 52 REMARK 465 GLU A 53 REMARK 465 LEU A 54 REMARK 465 ASN A 55 REMARK 465 ALA A 56 REMARK 465 ILE A 57 REMARK 465 LYS A 58 REMARK 465 ALA A 59 REMARK 465 ALA A 60 REMARK 465 LEU A 61 REMARK 465 GLU A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 LEU A 65 REMARK 465 GLU A 66 REMARK 465 ALA A 67 REMARK 465 ARG A 68 REMARK 465 GLU A 69 REMARK 465 LYS A 70 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 ALA A 75 REMARK 465 ALA A 76 REMARK 465 LEU A 77 REMARK 465 LYS A 78 REMARK 465 GLU A 79 REMARK 465 ALA A 80 REMARK 465 LEU A 81 REMARK 465 GLU A 82 REMARK 465 ARG A 83 REMARK 465 GLU A 84 REMARK 465 ARG A 85 REMARK 465 GLY B 776 REMARK 465 PHE B 777 REMARK 465 GLY B 778 REMARK 465 LEU B 779 REMARK 465 ARG B 780 REMARK 465 GLY B 781 REMARK 465 LEU B 782 REMARK 465 ASP B 783 REMARK 465 THR B 784 REMARK 465 PRO B 785 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 199 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 94 99.62 -50.78 REMARK 500 PHE A 134 -61.43 -120.84 REMARK 500 ASN A 138 38.04 -51.07 REMARK 500 GLU A 141 -74.37 -71.56 REMARK 500 ASP A 209 -159.24 -111.21 REMARK 500 PRO A 247 5.16 -60.45 REMARK 500 GLU A 273 -77.37 -60.28 REMARK 500 GLU B 14 41.63 -77.21 REMARK 500 VAL B 38 -42.15 -138.38 REMARK 500 PHE B 39 75.46 -104.66 REMARK 500 ILE B 108 -60.99 -92.73 REMARK 500 GLN B 109 67.88 -154.05 REMARK 500 TYR B 128 -77.38 -33.18 REMARK 500 PRO B 142 123.41 -37.36 REMARK 500 ARG B 164 63.52 -119.39 REMARK 500 LEU B 196 155.13 -42.56 REMARK 500 PRO B 199 23.64 -50.96 REMARK 500 PRO B 366 -9.15 -56.23 REMARK 500 ASP B 484 0.33 -61.44 REMARK 500 ARG B 486 -73.64 -37.50 REMARK 500 VAL B 488 -55.76 -12.17 REMARK 500 ARG B 522 -65.33 -90.42 REMARK 500 ARG B 523 -39.79 -38.55 REMARK 500 ARG B 525 82.56 -61.96 REMARK 500 PRO B 539 -8.79 -52.68 REMARK 500 LYS B 541 55.93 -140.88 REMARK 500 LYS B 557 -70.08 -43.31 REMARK 500 ARG B 564 79.71 -107.20 REMARK 500 ARG B 578 -136.30 -118.53 REMARK 500 LYS B 600 -70.60 -40.24 REMARK 500 SER B 604 -149.55 -156.60 REMARK 500 VAL B 644 -176.22 -63.19 REMARK 500 GLU B 645 103.65 -48.00 REMARK 500 GLU B 664 22.47 -53.01 REMARK 500 PRO B 666 -160.69 -79.79 REMARK 500 PHE B 671 138.89 -175.83 REMARK 500 PRO B 702 147.42 -31.32 REMARK 500 THR B 705 135.55 -39.76 REMARK 500 GLU B 709 -33.91 -39.72 REMARK 500 VAL B 710 -70.88 -59.18 REMARK 500 PRO B 735 23.08 -54.97 REMARK 500 PRO B 737 121.63 -26.82 REMARK 500 PRO B 752 -70.92 -52.75 REMARK 500 VAL B 761 -72.41 -71.72 REMARK 500 GLU B 770 -78.50 -57.32 REMARK 500 LEU B 772 -71.67 -64.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 262 OE1 REMARK 620 2 GLU A 262 OE2 41.8 REMARK 620 3 ASP B 452 OD2 150.1 129.0 REMARK 620 4 GLU B 461 OE2 74.6 48.8 123.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FYA A 1002 DBREF 1B7Y A 1 350 UNP P27001 SYFA_THETH 1 350 DBREF 1B7Y B 1 785 UNP P27002 SYFB_THETH 1 785 SEQRES 1 A 350 MET LEU GLU GLU ALA LEU ALA ALA ILE GLN ASN ALA ARG SEQRES 2 A 350 ASP LEU GLU GLU LEU LYS ALA LEU LYS ALA ARG TYR LEU SEQRES 3 A 350 GLY LYS LYS GLY LEU LEU THR GLN GLU MET LYS GLY LEU SEQRES 4 A 350 SER ALA LEU PRO LEU GLU GLU ARG ARG LYS ARG GLY GLN SEQRES 5 A 350 GLU LEU ASN ALA ILE LYS ALA ALA LEU GLU ALA ALA LEU SEQRES 6 A 350 GLU ALA ARG GLU LYS ALA LEU GLU GLU ALA ALA LEU LYS SEQRES 7 A 350 GLU ALA LEU GLU ARG GLU ARG VAL ASP VAL SER LEU PRO SEQRES 8 A 350 GLY ALA SER LEU PHE SER GLY GLY LEU HIS PRO ILE THR SEQRES 9 A 350 LEU MET GLU ARG GLU LEU VAL GLU ILE PHE ARG ALA LEU SEQRES 10 A 350 GLY TYR GLN ALA VAL GLU GLY PRO GLU VAL GLU SER GLU SEQRES 11 A 350 PHE PHE ASN PHE ASP ALA LEU ASN ILE PRO GLU HIS HIS SEQRES 12 A 350 PRO ALA ARG ASP MET TRP ASP THR PHE TRP LEU THR GLY SEQRES 13 A 350 GLU GLY PHE ARG LEU GLU GLY PRO LEU GLY GLU GLU VAL SEQRES 14 A 350 GLU GLY ARG LEU LEU LEU ARG THR HIS THR SER PRO MET SEQRES 15 A 350 GLN VAL ARG TYR MET VAL ALA HIS THR PRO PRO PHE ARG SEQRES 16 A 350 ILE VAL VAL PRO GLY ARG VAL PHE ARG PHE GLU GLN THR SEQRES 17 A 350 ASP ALA THR HIS GLU ALA VAL PHE HIS GLN LEU GLU GLY SEQRES 18 A 350 LEU VAL VAL GLY GLU GLY ILE ALA MET ALA HIS LEU LYS SEQRES 19 A 350 GLY ALA ILE TYR GLU LEU ALA GLN ALA LEU PHE GLY PRO SEQRES 20 A 350 ASP SER LYS VAL ARG PHE GLN PRO VAL TYR PHE PRO PHE SEQRES 21 A 350 VAL GLU PRO GLY ALA GLN PHE ALA VAL TRP TRP PRO GLU SEQRES 22 A 350 GLY GLY LYS TRP LEU GLU LEU GLY GLY ALA GLY MET VAL SEQRES 23 A 350 HIS PRO LYS VAL PHE GLN ALA VAL ASP ALA TYR ARG GLU SEQRES 24 A 350 ARG LEU GLY LEU PRO PRO ALA TYR ARG GLY VAL THR GLY SEQRES 25 A 350 PHE ALA PHE GLY LEU GLY VAL GLU ARG LEU ALA MET LEU SEQRES 26 A 350 ARG TYR GLY ILE PRO ASP ILE ARG TYR PHE PHE GLY GLY SEQRES 27 A 350 ARG LEU LYS PHE LEU GLU GLN PHE LYS GLY VAL LEU SEQRES 1 B 785 MET ARG VAL PRO PHE SER TRP LEU LYS ALA TYR VAL PRO SEQRES 2 B 785 GLU LEU GLU SER PRO GLU VAL LEU GLU GLU ARG LEU ALA SEQRES 3 B 785 GLY LEU GLY PHE GLU THR ASP ARG ILE GLU ARG VAL PHE SEQRES 4 B 785 PRO ILE PRO ARG GLY VAL VAL PHE ALA ARG VAL LEU GLU SEQRES 5 B 785 ALA HIS PRO ILE PRO GLY THR ARG LEU LYS ARG LEU VAL SEQRES 6 B 785 LEU ASP ALA GLY ARG THR VAL GLU VAL VAL SER GLY ALA SEQRES 7 B 785 GLU ASN ALA ARG LYS GLY ILE GLY VAL ALA LEU ALA LEU SEQRES 8 B 785 PRO GLY THR GLU LEU PRO GLY LEU GLY GLN LYS VAL GLY SEQRES 9 B 785 GLU ARG VAL ILE GLN GLY VAL ARG SER PHE GLY MET ALA SEQRES 10 B 785 LEU SER PRO ARG GLU LEU GLY VAL GLY GLU TYR GLY GLY SEQRES 11 B 785 GLY LEU LEU GLU PHE PRO GLU ASP ALA LEU PRO PRO GLY SEQRES 12 B 785 THR PRO LEU SER GLU ALA TRP PRO GLU GLU VAL VAL LEU SEQRES 13 B 785 ASP LEU GLU VAL THR PRO ASN ARG PRO ASP ALA LEU GLY SEQRES 14 B 785 LEU LEU GLY LEU ALA ARG ASP LEU HIS ALA LEU GLY TYR SEQRES 15 B 785 ALA LEU VAL GLU PRO GLU ALA ALA LEU LYS ALA GLU ALA SEQRES 16 B 785 LEU PRO LEU PRO PHE ALA LEU LYS VAL GLU ASP PRO GLU SEQRES 17 B 785 GLY ALA PRO HIS PHE THR LEU GLY TYR ALA PHE GLY LEU SEQRES 18 B 785 ARG VAL ALA PRO SER PRO LEU TRP MET GLN ARG ALA LEU SEQRES 19 B 785 PHE ALA ALA GLY MET ARG PRO ILE ASN ASN VAL VAL ASP SEQRES 20 B 785 VAL THR ASN TYR VAL MET LEU GLU ARG ALA GLN PRO MET SEQRES 21 B 785 HIS ALA PHE ASP LEU ARG PHE VAL GLY GLU GLY ILE ALA SEQRES 22 B 785 VAL ARG ARG ALA ARG GLU GLY GLU ARG LEU LYS THR LEU SEQRES 23 B 785 ASP GLY VAL GLU ARG THR LEU HIS PRO GLU ASP LEU VAL SEQRES 24 B 785 ILE ALA GLY TRP ARG GLY GLU GLU SER PHE PRO LEU GLY SEQRES 25 B 785 LEU ALA GLY VAL MET GLY GLY ALA GLU SER GLU VAL ARG SEQRES 26 B 785 GLU ASP THR GLU ALA ILE ALA LEU GLU VAL ALA CYS PHE SEQRES 27 B 785 ASP PRO VAL SER ILE ARG LYS THR ALA ARG ARG HIS GLY SEQRES 28 B 785 LEU ARG THR GLU ALA SER HIS ARG PHE GLU ARG GLY VAL SEQRES 29 B 785 ASP PRO LEU GLY GLN VAL PRO ALA GLN ARG ARG ALA LEU SEQRES 30 B 785 SER LEU LEU GLN ALA LEU ALA GLY ALA ARG VAL ALA GLU SEQRES 31 B 785 ALA LEU LEU GLU ALA GLY SER PRO LYS PRO PRO GLU ALA SEQRES 32 B 785 ILE PRO PHE ARG PRO GLU TYR ALA ASN ARG LEU LEU GLY SEQRES 33 B 785 THR SER TYR PRO GLU ALA GLU GLN ILE ALA ILE LEU LYS SEQRES 34 B 785 ARG LEU GLY CYS ARG VAL GLU GLY GLU GLY PRO THR TYR SEQRES 35 B 785 ARG VAL THR PRO PRO SER HIS ARG LEU ASP LEU ARG LEU SEQRES 36 B 785 GLU GLU ASP LEU VAL GLU GLU VAL ALA ARG ILE GLN GLY SEQRES 37 B 785 TYR GLU THR ILE PRO LEU ALA LEU PRO ALA PHE PHE PRO SEQRES 38 B 785 ALA PRO ASP ASN ARG GLY VAL GLU ALA PRO TYR ARG LYS SEQRES 39 B 785 GLU GLN ARG LEU ARG GLU VAL LEU SER GLY LEU GLY PHE SEQRES 40 B 785 GLN GLU VAL TYR THR TYR SER PHE MET ASP PRO GLU ASP SEQRES 41 B 785 ALA ARG ARG PHE ARG LEU ASP PRO PRO ARG LEU LEU LEU SEQRES 42 B 785 LEU ASN PRO LEU ALA PRO GLU LYS ALA ALA LEU ARG THR SEQRES 43 B 785 HIS LEU PHE PRO GLY LEU VAL ARG VAL LEU LYS GLU ASN SEQRES 44 B 785 LEU ASP LEU ASP ARG PRO GLU ARG ALA LEU LEU PHE GLU SEQRES 45 B 785 VAL GLY ARG VAL PHE ARG GLU ARG GLU GLU THR HIS LEU SEQRES 46 B 785 ALA GLY LEU LEU PHE GLY GLU GLY VAL GLY LEU PRO TRP SEQRES 47 B 785 ALA LYS GLU ARG LEU SER GLY TYR PHE LEU LEU LYS GLY SEQRES 48 B 785 TYR LEU GLU ALA LEU PHE ALA ARG LEU GLY LEU ALA PHE SEQRES 49 B 785 ARG VAL GLU ALA GLN ALA PHE PRO PHE LEU HIS PRO GLY SEQRES 50 B 785 VAL SER GLY ARG VAL LEU VAL GLU GLY GLU GLU VAL GLY SEQRES 51 B 785 PHE LEU GLY ALA LEU HIS PRO GLU ILE ALA GLN GLU LEU SEQRES 52 B 785 GLU LEU PRO PRO VAL HIS LEU PHE GLU LEU ARG LEU PRO SEQRES 53 B 785 LEU PRO ASP LYS PRO LEU ALA PHE GLN ASP PRO SER ARG SEQRES 54 B 785 HIS PRO ALA ALA PHE ARG ASP LEU ALA VAL VAL VAL PRO SEQRES 55 B 785 ALA PRO THR PRO TYR GLY GLU VAL GLU ALA LEU VAL ARG SEQRES 56 B 785 GLU ALA ALA GLY PRO TYR LEU GLU SER LEU ALA LEU PHE SEQRES 57 B 785 ASP LEU TYR GLN GLY PRO PRO LEU PRO GLU GLY HIS LYS SEQRES 58 B 785 SER LEU ALA PHE HIS LEU ARG PHE ARG HIS PRO LYS ARG SEQRES 59 B 785 THR LEU ARG ASP GLU GLU VAL GLU GLU ALA VAL SER ARG SEQRES 60 B 785 VAL ALA GLU ALA LEU ARG ALA ARG GLY PHE GLY LEU ARG SEQRES 61 B 785 GLY LEU ASP THR PRO HET MG A1001 1 HET FYA A1002 33 HETNAM MG MAGNESIUM ION HETNAM FYA ADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] FORMUL 3 MG MG 2+ FORMUL 4 FYA C19 H25 N6 O7 P FORMUL 5 HOH *239(H2 O) HELIX 1 1 PRO A 102 LEU A 117 1 16 HELIX 2 2 GLU A 130 ASN A 133 1 4 HELIX 3 3 SER A 180 ALA A 189 5 10 HELIX 4 4 MET A 230 LEU A 244 1 15 HELIX 5 5 PRO A 288 ARG A 300 1 13 HELIX 6 6 VAL A 319 ARG A 326 1 8 HELIX 7 7 ILE A 332 TYR A 334 5 3 HELIX 8 8 LEU A 340 PHE A 346 1 7 HELIX 9 9 PHE B 5 ALA B 10 1 6 HELIX 10 10 PRO B 18 LEU B 28 1 11 HELIX 11 11 PRO B 120 LEU B 123 1 4 HELIX 12 12 LEU B 146 GLU B 148 5 3 HELIX 13 13 PRO B 165 LEU B 168 5 4 HELIX 14 14 LEU B 170 LEU B 180 1 11 HELIX 15 15 LEU B 228 ALA B 236 1 9 HELIX 16 16 ASN B 244 GLU B 255 1 12 HELIX 17 17 LEU B 265 PHE B 267 5 3 HELIX 18 18 PRO B 340 ARG B 349 1 10 HELIX 19 19 GLU B 355 ARG B 362 1 8 HELIX 20 20 GLY B 368 LEU B 383 1 16 HELIX 21 21 PRO B 408 LEU B 415 1 8 HELIX 22 22 GLU B 421 ARG B 430 1 10 HELIX 23 23 GLU B 456 GLN B 467 1 12 HELIX 24 24 TYR B 469 THR B 471 5 3 HELIX 25 25 PRO B 483 ASN B 485 5 3 HELIX 26 26 VAL B 488 LEU B 505 5 18 HELIX 27 27 PRO B 518 ARG B 523 5 6 HELIX 28 28 PHE B 549 LEU B 562 1 14 HELIX 29 29 TYR B 606 LEU B 620 1 15 HELIX 30 30 PRO B 657 GLU B 662 1 6 HELIX 31 31 TYR B 707 ALA B 718 1 12 HELIX 32 32 ASP B 758 ARG B 773 1 16 SHEET 1 A 7 GLN A 120 ALA A 121 0 SHEET 2 A 7 PHE A 194 PHE A 203 1 O VAL A 197 N GLN A 120 SHEET 3 A 7 VAL A 215 GLY A 225 -1 O GLU A 220 N VAL A 198 SHEET 4 A 7 THR A 311 GLY A 318 -1 O PHE A 315 N GLY A 221 SHEET 5 A 7 LYS A 276 VAL A 286 -1 N GLY A 282 O GLY A 316 SHEET 6 A 7 VAL A 261 TRP A 271 -1 N PHE A 267 O LEU A 280 SHEET 7 A 7 VAL A 251 PRO A 255 -1 N ARG A 252 O ALA A 268 SHEET 1 B 2 VAL A 127 SER A 129 0 SHEET 2 B 2 LEU A 173 LEU A 175 -1 O LEU A 174 N GLU A 128 SHEET 1 C 2 LEU A 154 THR A 155 0 SHEET 2 C 2 LEU B 532 LEU B 533 -1 O LEU B 532 N THR A 155 SHEET 1 D 3 ARG B 2 PRO B 4 0 SHEET 2 D 3 VAL B 154 ASP B 157 -1 O LEU B 156 N VAL B 3 SHEET 3 D 3 ARG B 34 ARG B 37 -1 N GLU B 36 O VAL B 155 SHEET 1 E 5 THR B 71 SER B 76 0 SHEET 2 E 5 LYS B 62 ASP B 67 -1 N LEU B 66 O VAL B 72 SHEET 3 E 5 VAL B 45 PRO B 55 -1 N HIS B 54 O ARG B 63 SHEET 4 E 5 GLY B 86 ALA B 90 -1 O VAL B 87 N ALA B 48 SHEET 5 E 5 MET B 116 ALA B 117 -1 O MET B 116 N ALA B 90 SHEET 1 F 2 ARG B 106 VAL B 107 0 SHEET 2 F 2 ARG B 112 SER B 113 -1 O SER B 113 N ARG B 106 SHEET 1 G 5 ALA B 193 GLU B 194 0 SHEET 2 G 5 ARG B 387 ALA B 389 1 O VAL B 388 N GLU B 194 SHEET 3 G 5 HIS B 212 PHE B 219 -1 N PHE B 219 O ARG B 387 SHEET 4 G 5 ALA B 330 CYS B 337 -1 O CYS B 337 N HIS B 212 SHEET 5 G 5 HIS B 261 ASP B 264 -1 N HIS B 261 O GLU B 334 SHEET 1 H 4 ALA B 193 GLU B 194 0 SHEET 2 H 4 ARG B 387 ALA B 389 1 O VAL B 388 N GLU B 194 SHEET 3 H 4 HIS B 212 PHE B 219 -1 N PHE B 219 O ARG B 387 SHEET 4 H 4 LEU B 393 ALA B 395 -1 O LEU B 393 N LEU B 215 SHEET 1 I 5 ALA B 201 VAL B 204 0 SHEET 2 I 5 GLY B 271 ARG B 276 1 O ILE B 272 N ALA B 201 SHEET 3 I 5 LEU B 298 ARG B 304 -1 O ALA B 301 N ALA B 273 SHEET 4 I 5 GLU B 307 LEU B 313 -1 O LEU B 311 N ILE B 300 SHEET 5 I 5 MET B 317 GLY B 318 -1 O MET B 317 N LEU B 313 SHEET 1 J 2 ARG B 282 LYS B 284 0 SHEET 2 J 2 GLU B 290 THR B 292 -1 O ARG B 291 N LEU B 283 SHEET 1 K 3 ILE B 404 PHE B 406 0 SHEET 2 K 3 TYR B 442 THR B 445 -1 O VAL B 444 N ILE B 404 SHEET 3 K 3 ARG B 434 GLU B 436 -1 N GLU B 436 O ARG B 443 SHEET 1 L 7 GLN B 508 GLU B 509 0 SHEET 2 L 7 ALA B 568 PHE B 577 1 O PHE B 571 N GLN B 508 SHEET 3 L 7 GLU B 581 PHE B 590 -1 O PHE B 590 N ALA B 568 SHEET 4 L 7 HIS B 669 LEU B 675 -1 O LEU B 673 N LEU B 585 SHEET 5 L 7 GLU B 647 LEU B 655 -1 N GLY B 653 O LEU B 670 SHEET 6 L 7 LEU B 634 VAL B 644 -1 N GLY B 640 O LEU B 652 SHEET 7 L 7 ARG B 625 GLU B 627 -1 N GLU B 627 O ARG B 641 SHEET 1 M 2 PHE B 515 MET B 516 0 SHEET 2 M 2 ALA B 543 LEU B 544 -1 O ALA B 543 N MET B 516 SHEET 1 N 3 ALA B 693 LEU B 697 0 SHEET 2 N 3 ALA B 744 PHE B 749 -1 O PHE B 745 N LEU B 697 SHEET 3 N 3 LEU B 722 ASP B 729 -1 N ASP B 729 O ALA B 744 SHEET 1 O 2 VAL B 701 PRO B 702 0 SHEET 2 O 2 HIS B 740 LYS B 741 -1 O LYS B 741 N VAL B 701 LINK OE1 GLU A 262 MG MG A1001 1555 1555 3.05 LINK OE2 GLU A 262 MG MG A1001 1555 1555 3.07 LINK MG MG A1001 OD2 ASP B 452 1555 1555 3.12 LINK MG MG A1001 OE2 GLU B 461 1555 1555 2.82 CISPEP 1 PRO A 192 PRO A 193 0 0.31 CISPEP 2 GLY A 246 PRO A 247 0 0.67 CISPEP 3 GLU A 262 PRO A 263 0 -4.91 CISPEP 4 GLY B 439 PRO B 440 0 0.43 CISPEP 5 LEU B 675 PRO B 676 0 0.06 SITE 1 AC1 4 GLU A 262 ASP B 452 GLU B 461 GLU B 462 SITE 1 AC2 19 TRP A 149 HIS A 178 SER A 180 ARG A 204 SITE 2 AC2 19 GLU A 206 GLU A 213 PHE A 216 GLN A 218 SITE 3 AC2 19 GLU A 220 PHE A 258 LEU A 280 GLY A 281 SITE 4 AC2 19 GLY A 282 ALA A 283 ALA A 314 PHE A 315 SITE 5 AC2 19 GLY A 316 GLY A 318 ARG A 321 CRYST1 174.500 174.500 140.200 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005731 0.003308 0.000000 0.00000 SCALE2 0.000000 0.006617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007133 0.00000