data_1B8I # _entry.id 1B8I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1B8I pdb_00001b8i 10.2210/pdb1b8i/pdb NDB PD0042 ? ? RCSB RCSB000414 ? ? WWPDB D_1000000414 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-04-12 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1B8I _pdbx_database_status.recvd_initial_deposition_date 1999-02-01 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Passner, J.M.' 1 'Ryoo, H.-D.' 2 'Shen, L.' 3 'Mann, R.S.' 4 'Aggarwal, A.K.' 5 # _citation.id primary _citation.title 'Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex.' _citation.journal_abbrev Nature _citation.journal_volume 397 _citation.page_first 714 _citation.page_last 719 _citation.year 1999 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10067897 _citation.pdbx_database_id_DOI 10.1038/17833 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Passner, J.M.' 1 ? primary 'Ryoo, H.D.' 2 ? primary 'Shen, L.' 3 ? primary 'Mann, R.S.' 4 ? primary 'Aggarwal, A.K.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3') ; 4537.975 1 ? ? 'UBX/EXD CONSENSUS BINDING SITE' ? 2 polymer syn ;DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3') ; 4640.020 1 ? ? 'UBX/EXD CONSENSUS BINDING SITE' ? 3 polymer man 'PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV)' 9998.532 1 ? C139S 'YPWM MOTIF AND HOMEODOMAIN' ? 4 polymer man 'PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE)' 7553.561 1 ? ? HOMEODOMAIN ? 5 water nat water 18.015 110 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 3 ULTRABITHORAX 4 'PBX PROTEIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DC)(DC)(DA)(DT)(DA)(DA)(DA)(DT)(DC)(DA)(DC)' GTCGCCATAAATCAC C ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DT)(DG)(DA)(DT)(DT)(DT)(DA)(DT)(DG)(DG)(DC)(DG)' ACGTGATTTATGGCG D ? 3 'polypeptide(L)' no no ;QASNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ A ; ;QASNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ A ; A ? 4 'polypeptide(L)' no no ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI B ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DA n 1 8 DT n 1 9 DA n 1 10 DA n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DA n 1 15 DC n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DA n 2 11 DT n 2 12 DG n 2 13 DG n 2 14 DC n 2 15 DG n 3 1 GLN n 3 2 ALA n 3 3 SER n 3 4 ASN n 3 5 HIS n 3 6 THR n 3 7 PHE n 3 8 TYR n 3 9 PRO n 3 10 TRP n 3 11 MET n 3 12 ALA n 3 13 ILE n 3 14 ALA n 3 15 GLY n 3 16 THR n 3 17 ASN n 3 18 GLY n 3 19 LEU n 3 20 ARG n 3 21 ARG n 3 22 ARG n 3 23 GLY n 3 24 ARG n 3 25 GLN n 3 26 THR n 3 27 TYR n 3 28 THR n 3 29 ARG n 3 30 TYR n 3 31 GLN n 3 32 THR n 3 33 LEU n 3 34 GLU n 3 35 LEU n 3 36 GLU n 3 37 LYS n 3 38 GLU n 3 39 PHE n 3 40 HIS n 3 41 THR n 3 42 ASN n 3 43 HIS n 3 44 TYR n 3 45 LEU n 3 46 THR n 3 47 ARG n 3 48 ARG n 3 49 ARG n 3 50 ARG n 3 51 ILE n 3 52 GLU n 3 53 MET n 3 54 ALA n 3 55 HIS n 3 56 ALA n 3 57 LEU n 3 58 SER n 3 59 LEU n 3 60 THR n 3 61 GLU n 3 62 ARG n 3 63 GLN n 3 64 ILE n 3 65 LYS n 3 66 ILE n 3 67 TRP n 3 68 PHE n 3 69 GLN n 3 70 ASN n 3 71 ARG n 3 72 ARG n 3 73 MET n 3 74 LYS n 3 75 LEU n 3 76 LYS n 3 77 LYS n 3 78 GLU n 3 79 ILE n 3 80 GLN n 3 81 ALA n 4 1 ALA n 4 2 ARG n 4 3 ARG n 4 4 LYS n 4 5 ARG n 4 6 ARG n 4 7 ASN n 4 8 PHE n 4 9 SER n 4 10 LYS n 4 11 GLN n 4 12 ALA n 4 13 SER n 4 14 GLU n 4 15 ILE n 4 16 LEU n 4 17 ASN n 4 18 GLU n 4 19 TYR n 4 20 PHE n 4 21 TYR n 4 22 SER n 4 23 HIS n 4 24 LEU n 4 25 SER n 4 26 ASN n 4 27 PRO n 4 28 TYR n 4 29 PRO n 4 30 SER n 4 31 GLU n 4 32 GLU n 4 33 ALA n 4 34 LYS n 4 35 GLU n 4 36 GLU n 4 37 LEU n 4 38 ALA n 4 39 ARG n 4 40 LYS n 4 41 CYS n 4 42 GLY n 4 43 ILE n 4 44 THR n 4 45 VAL n 4 46 SER n 4 47 GLN n 4 48 VAL n 4 49 SER n 4 50 ASN n 4 51 TRP n 4 52 PHE n 4 53 GLY n 4 54 ASN n 4 55 LYS n 4 56 ARG n 4 57 ILE n 4 58 ARG n 4 59 TYR n 4 60 LYS n 4 61 LYS n 4 62 ASN n 4 63 ILE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 3 1 sample ? ? ? 'fruit fly' Drosophila UBX ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? NUCLEUS ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21(DE3)' PLYSS ? ? ? ? ? CYTOPLASM PLASMID ? ? ? PET-3A ? 'IVA SPLICING ISOFORM OF THE UBX GENE WAS USED;' 4 1 sample ? ? ? 'fruit fly' Drosophila ? ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? NUCLEUS ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? CYTOPLASM ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G C . n A 1 2 DT 2 2 2 DT T C . n A 1 3 DC 3 3 3 DC C C . n A 1 4 DG 4 4 4 DG G C . n A 1 5 DC 5 5 5 DC C C . n A 1 6 DC 6 6 6 DC C C . n A 1 7 DA 7 7 7 DA A C . n A 1 8 DT 8 8 8 DT T C . n A 1 9 DA 9 9 9 DA A C . n A 1 10 DA 10 10 10 DA A C . n A 1 11 DA 11 11 11 DA A C . n A 1 12 DT 12 12 12 DT T C . n A 1 13 DC 13 13 13 DC C C . n A 1 14 DA 14 14 14 DA A C . n A 1 15 DC 15 15 15 DC C C . n B 2 1 DA 1 16 16 DA A D . n B 2 2 DC 2 17 17 DC C D . n B 2 3 DG 3 18 18 DG G D . n B 2 4 DT 4 19 19 DT T D . n B 2 5 DG 5 20 20 DG G D . n B 2 6 DA 6 21 21 DA A D . n B 2 7 DT 7 22 22 DT T D . n B 2 8 DT 8 23 23 DT T D . n B 2 9 DT 9 24 24 DT T D . n B 2 10 DA 10 25 25 DA A D . n B 2 11 DT 11 26 26 DT T D . n B 2 12 DG 12 27 27 DG G D . n B 2 13 DG 13 28 28 DG G D . n B 2 14 DC 14 29 29 DC C D . n B 2 15 DG 15 30 30 DG G D . n C 3 1 GLN 1 82 ? ? ? A . n C 3 2 ALA 2 83 ? ? ? A . n C 3 3 SER 3 84 ? ? ? A . n C 3 4 ASN 4 85 ? ? ? A . n C 3 5 HIS 5 86 ? ? ? A . n C 3 6 THR 6 87 ? ? ? A . n C 3 7 PHE 7 88 88 PHE PHE A . n C 3 8 TYR 8 89 89 TYR TYR A . n C 3 9 PRO 9 90 90 PRO PRO A . n C 3 10 TRP 10 91 91 TRP TRP A . n C 3 11 MET 11 92 92 MET MET A . n C 3 12 ALA 12 93 93 ALA ALA A . n C 3 13 ILE 13 94 ? ? ? A . n C 3 14 ALA 14 95 ? ? ? A . n C 3 15 GLY 15 96 ? ? ? A . n C 3 16 THR 16 97 ? ? ? A . n C 3 17 ASN 17 98 ? ? ? A . n C 3 18 GLY 18 99 ? ? ? A . n C 3 19 LEU 19 100 ? ? ? A . n C 3 20 ARG 20 101 ? ? ? A . n C 3 21 ARG 21 102 ? ? ? A . n C 3 22 ARG 22 103 ? ? ? A . n C 3 23 GLY 23 104 ? ? ? A . n C 3 24 ARG 24 105 105 ARG ARG A . n C 3 25 GLN 25 106 106 GLN GLN A . n C 3 26 THR 26 107 107 THR THR A . n C 3 27 TYR 27 108 108 TYR TYR A . n C 3 28 THR 28 109 109 THR THR A . n C 3 29 ARG 29 110 110 ARG ARG A . n C 3 30 TYR 30 111 111 TYR TYR A . n C 3 31 GLN 31 112 112 GLN GLN A . n C 3 32 THR 32 113 113 THR THR A . n C 3 33 LEU 33 114 114 LEU LEU A . n C 3 34 GLU 34 115 115 GLU GLU A . n C 3 35 LEU 35 116 116 LEU LEU A . n C 3 36 GLU 36 117 117 GLU GLU A . n C 3 37 LYS 37 118 118 LYS LYS A . n C 3 38 GLU 38 119 119 GLU GLU A . n C 3 39 PHE 39 120 120 PHE PHE A . n C 3 40 HIS 40 121 121 HIS HIS A . n C 3 41 THR 41 122 122 THR THR A . n C 3 42 ASN 42 123 123 ASN ASN A . n C 3 43 HIS 43 124 124 HIS HIS A . n C 3 44 TYR 44 125 125 TYR TYR A . n C 3 45 LEU 45 126 126 LEU LEU A . n C 3 46 THR 46 127 127 THR THR A . n C 3 47 ARG 47 128 128 ARG ARG A . n C 3 48 ARG 48 129 129 ARG ARG A . n C 3 49 ARG 49 130 130 ARG ARG A . n C 3 50 ARG 50 131 131 ARG ARG A . n C 3 51 ILE 51 132 132 ILE ILE A . n C 3 52 GLU 52 133 133 GLU GLU A . n C 3 53 MET 53 134 134 MET MET A . n C 3 54 ALA 54 135 135 ALA ALA A . n C 3 55 HIS 55 136 136 HIS HIS A . n C 3 56 ALA 56 137 137 ALA ALA A . n C 3 57 LEU 57 138 138 LEU LEU A . n C 3 58 SER 58 139 139 SER SER A . n C 3 59 LEU 59 140 140 LEU LEU A . n C 3 60 THR 60 141 141 THR THR A . n C 3 61 GLU 61 142 142 GLU GLU A . n C 3 62 ARG 62 143 143 ARG ARG A . n C 3 63 GLN 63 144 144 GLN GLN A . n C 3 64 ILE 64 145 145 ILE ILE A . n C 3 65 LYS 65 146 146 LYS LYS A . n C 3 66 ILE 66 147 147 ILE ILE A . n C 3 67 TRP 67 148 148 TRP TRP A . n C 3 68 PHE 68 149 149 PHE PHE A . n C 3 69 GLN 69 150 150 GLN GLN A . n C 3 70 ASN 70 151 151 ASN ASN A . n C 3 71 ARG 71 152 152 ARG ARG A . n C 3 72 ARG 72 153 153 ARG ARG A . n C 3 73 MET 73 154 154 MET MET A . n C 3 74 LYS 74 155 155 LYS LYS A . n C 3 75 LEU 75 156 156 LEU LEU A . n C 3 76 LYS 76 157 157 LYS LYS A . n C 3 77 LYS 77 158 158 LYS LYS A . n C 3 78 GLU 78 159 159 GLU GLU A . n C 3 79 ILE 79 160 160 ILE ILE A . n C 3 80 GLN 80 161 ? ? ? A . n C 3 81 ALA 81 162 ? ? ? A . n D 4 1 ALA 1 201 ? ? ? B . n D 4 2 ARG 2 202 ? ? ? B . n D 4 3 ARG 3 203 ? ? ? B . n D 4 4 LYS 4 204 ? ? ? B . n D 4 5 ARG 5 205 205 ARG ARG B . n D 4 6 ARG 6 206 206 ARG ARG B . n D 4 7 ASN 7 207 207 ASN ASN B . n D 4 8 PHE 8 208 208 PHE PHE B . n D 4 9 SER 9 209 209 SER SER B . n D 4 10 LYS 10 210 210 LYS LYS B . n D 4 11 GLN 11 211 211 GLN GLN B . n D 4 12 ALA 12 212 212 ALA ALA B . n D 4 13 SER 13 213 213 SER SER B . n D 4 14 GLU 14 214 214 GLU GLU B . n D 4 15 ILE 15 215 215 ILE ILE B . n D 4 16 LEU 16 216 216 LEU LEU B . n D 4 17 ASN 17 217 217 ASN ASN B . n D 4 18 GLU 18 218 218 GLU GLU B . n D 4 19 TYR 19 219 219 TYR TYR B . n D 4 20 PHE 20 220 220 PHE PHE B . n D 4 21 TYR 21 221 221 TYR TYR B . n D 4 22 SER 22 222 222 SER SER B . n D 4 23 HIS 23 223 223 HIS HIS B . n D 4 24 LEU 24 224 1223 LEU LEU B . n D 4 25 SER 25 225 1224 SER SER B . n D 4 26 ASN 26 226 1225 ASN ASN B . n D 4 27 PRO 27 227 224 PRO PRO B . n D 4 28 TYR 28 228 225 TYR TYR B . n D 4 29 PRO 29 229 226 PRO PRO B . n D 4 30 SER 30 230 227 SER SER B . n D 4 31 GLU 31 231 228 GLU GLU B . n D 4 32 GLU 32 232 229 GLU GLU B . n D 4 33 ALA 33 233 230 ALA ALA B . n D 4 34 LYS 34 234 231 LYS LYS B . n D 4 35 GLU 35 235 232 GLU GLU B . n D 4 36 GLU 36 236 233 GLU GLU B . n D 4 37 LEU 37 237 234 LEU LEU B . n D 4 38 ALA 38 238 235 ALA ALA B . n D 4 39 ARG 39 239 236 ARG ARG B . n D 4 40 LYS 40 240 237 LYS LYS B . n D 4 41 CYS 41 241 238 CYS CYS B . n D 4 42 GLY 42 242 239 GLY GLY B . n D 4 43 ILE 43 243 240 ILE ILE B . n D 4 44 THR 44 244 241 THR THR B . n D 4 45 VAL 45 245 242 VAL VAL B . n D 4 46 SER 46 246 243 SER SER B . n D 4 47 GLN 47 247 244 GLN GLN B . n D 4 48 VAL 48 248 245 VAL VAL B . n D 4 49 SER 49 249 246 SER SER B . n D 4 50 ASN 50 250 247 ASN ASN B . n D 4 51 TRP 51 251 248 TRP TRP B . n D 4 52 PHE 52 252 249 PHE PHE B . n D 4 53 GLY 53 253 250 GLY GLY B . n D 4 54 ASN 54 254 251 ASN ASN B . n D 4 55 LYS 55 255 252 LYS LYS B . n D 4 56 ARG 56 256 253 ARG ARG B . n D 4 57 ILE 57 257 254 ILE ILE B . n D 4 58 ARG 58 258 255 ARG ARG B . n D 4 59 TYR 59 259 256 TYR TYR B . n D 4 60 LYS 60 260 257 LYS LYS B . n D 4 61 LYS 61 261 258 LYS LYS B . n D 4 62 ASN 62 262 259 ASN ASN B . n D 4 63 ILE 63 263 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HOH 1 702 702 HOH HOH C . E 5 HOH 2 704 704 HOH HOH C . E 5 HOH 3 713 713 HOH HOH C . E 5 HOH 4 714 714 HOH HOH C . E 5 HOH 5 715 715 HOH HOH C . E 5 HOH 6 724 724 HOH HOH C . E 5 HOH 7 725 725 HOH HOH C . E 5 HOH 8 726 726 HOH HOH C . E 5 HOH 9 727 727 HOH HOH C . E 5 HOH 10 736 736 HOH HOH C . E 5 HOH 11 741 741 HOH HOH C . E 5 HOH 12 756 756 HOH HOH C . E 5 HOH 13 763 763 HOH HOH C . E 5 HOH 14 768 768 HOH HOH C . E 5 HOH 15 771 771 HOH HOH C . E 5 HOH 16 773 773 HOH HOH C . E 5 HOH 17 775 775 HOH HOH C . E 5 HOH 18 777 777 HOH HOH C . E 5 HOH 19 778 778 HOH HOH C . E 5 HOH 20 780 780 HOH HOH C . E 5 HOH 21 782 782 HOH HOH C . E 5 HOH 22 789 789 HOH HOH C . E 5 HOH 23 790 790 HOH HOH C . E 5 HOH 24 791 791 HOH HOH C . E 5 HOH 25 792 792 HOH HOH C . E 5 HOH 26 796 796 HOH HOH C . E 5 HOH 27 801 801 HOH HOH C . E 5 HOH 28 804 804 HOH HOH C . E 5 HOH 29 805 805 HOH HOH C . F 5 HOH 1 703 703 HOH HOH D . F 5 HOH 2 707 707 HOH HOH D . F 5 HOH 3 710 710 HOH HOH D . F 5 HOH 4 718 718 HOH HOH D . F 5 HOH 5 719 719 HOH HOH D . F 5 HOH 6 721 721 HOH HOH D . F 5 HOH 7 732 732 HOH HOH D . F 5 HOH 8 733 733 HOH HOH D . F 5 HOH 9 735 735 HOH HOH D . F 5 HOH 10 738 738 HOH HOH D . F 5 HOH 11 740 740 HOH HOH D . F 5 HOH 12 743 743 HOH HOH D . F 5 HOH 13 745 745 HOH HOH D . F 5 HOH 14 746 746 HOH HOH D . F 5 HOH 15 748 748 HOH HOH D . F 5 HOH 16 750 750 HOH HOH D . F 5 HOH 17 751 751 HOH HOH D . F 5 HOH 18 753 753 HOH HOH D . F 5 HOH 19 754 754 HOH HOH D . F 5 HOH 20 758 758 HOH HOH D . F 5 HOH 21 759 759 HOH HOH D . F 5 HOH 22 760 760 HOH HOH D . F 5 HOH 23 762 762 HOH HOH D . F 5 HOH 24 764 764 HOH HOH D . F 5 HOH 25 770 770 HOH HOH D . F 5 HOH 26 774 774 HOH HOH D . F 5 HOH 27 776 776 HOH HOH D . F 5 HOH 28 783 783 HOH HOH D . F 5 HOH 29 784 784 HOH HOH D . F 5 HOH 30 785 785 HOH HOH D . F 5 HOH 31 788 788 HOH HOH D . F 5 HOH 32 795 795 HOH HOH D . F 5 HOH 33 798 798 HOH HOH D . F 5 HOH 34 806 806 HOH HOH D . G 5 HOH 1 705 705 HOH HOH A . G 5 HOH 2 706 706 HOH HOH A . G 5 HOH 3 709 709 HOH HOH A . G 5 HOH 4 711 711 HOH HOH A . G 5 HOH 5 712 712 HOH HOH A . G 5 HOH 6 717 717 HOH HOH A . G 5 HOH 7 722 722 HOH HOH A . G 5 HOH 8 729 729 HOH HOH A . G 5 HOH 9 731 731 HOH HOH A . G 5 HOH 10 734 734 HOH HOH A . G 5 HOH 11 737 737 HOH HOH A . G 5 HOH 12 739 739 HOH HOH A . G 5 HOH 13 742 742 HOH HOH A . G 5 HOH 14 744 744 HOH HOH A . G 5 HOH 15 747 747 HOH HOH A . G 5 HOH 16 749 749 HOH HOH A . G 5 HOH 17 752 752 HOH HOH A . G 5 HOH 18 757 757 HOH HOH A . G 5 HOH 19 765 765 HOH HOH A . G 5 HOH 20 767 767 HOH HOH A . G 5 HOH 21 781 781 HOH HOH A . G 5 HOH 22 786 786 HOH HOH A . G 5 HOH 23 800 800 HOH HOH A . G 5 HOH 24 803 803 HOH HOH A . G 5 HOH 25 807 807 HOH HOH A . G 5 HOH 26 808 808 HOH HOH A . G 5 HOH 27 809 809 HOH HOH A . G 5 HOH 28 810 810 HOH HOH A . H 5 HOH 1 701 701 HOH HOH B . H 5 HOH 2 708 708 HOH HOH B . H 5 HOH 3 716 716 HOH HOH B . H 5 HOH 4 720 720 HOH HOH B . H 5 HOH 5 723 723 HOH HOH B . H 5 HOH 6 728 728 HOH HOH B . H 5 HOH 7 730 730 HOH HOH B . H 5 HOH 8 755 755 HOH HOH B . H 5 HOH 9 761 761 HOH HOH B . H 5 HOH 10 766 766 HOH HOH B . H 5 HOH 11 769 769 HOH HOH B . H 5 HOH 12 772 772 HOH HOH B . H 5 HOH 13 779 779 HOH HOH B . H 5 HOH 14 787 787 HOH HOH B . H 5 HOH 15 793 793 HOH HOH B . H 5 HOH 16 794 794 HOH HOH B . H 5 HOH 17 797 797 HOH HOH B . H 5 HOH 18 799 799 HOH HOH B . H 5 HOH 19 802 802 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 110 ? CG ? C ARG 29 CG 2 1 Y 1 A ARG 110 ? CD ? C ARG 29 CD 3 1 Y 1 A ARG 110 ? NE ? C ARG 29 NE 4 1 Y 1 A ARG 110 ? CZ ? C ARG 29 CZ 5 1 Y 1 A ARG 110 ? NH1 ? C ARG 29 NH1 6 1 Y 1 A ARG 110 ? NH2 ? C ARG 29 NH2 7 1 Y 1 B GLU 236 ? CG ? D GLU 36 CG 8 1 Y 1 B GLU 236 ? CD ? D GLU 36 CD 9 1 Y 1 B GLU 236 ? OE1 ? D GLU 36 OE1 10 1 Y 1 B GLU 236 ? OE2 ? D GLU 36 OE2 11 1 Y 1 B ARG 239 ? CG ? D ARG 39 CG 12 1 Y 1 B ARG 239 ? CD ? D ARG 39 CD 13 1 Y 1 B ARG 239 ? NE ? D ARG 39 NE 14 1 Y 1 B ARG 239 ? CZ ? D ARG 39 CZ 15 1 Y 1 B ARG 239 ? NH1 ? D ARG 39 NH1 16 1 Y 1 B ARG 239 ? NH2 ? D ARG 39 NH2 17 1 Y 1 B LYS 240 ? CG ? D LYS 40 CG 18 1 Y 1 B LYS 240 ? CD ? D LYS 40 CD 19 1 Y 1 B LYS 240 ? CE ? D LYS 40 CE 20 1 Y 1 B LYS 240 ? NZ ? D LYS 40 NZ 21 1 Y 1 B ASN 262 ? CG ? D ASN 62 CG 22 1 Y 1 B ASN 262 ? OD1 ? D ASN 62 OD1 23 1 Y 1 B ASN 262 ? ND2 ? D ASN 62 ND2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MLPHARE phasing . ? 1 SHARP phasing . ? 2 X-PLOR refinement 3.851 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 1B8I _cell.length_a 69.430 _cell.length_b 69.430 _cell.length_c 100.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B8I _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 1B8I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 40 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.6M AMMONIUM PHOSPHATE, pH 4.5, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 1998-12-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength .930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 _diffrn_source.pdbx_wavelength .930 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1B8I _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20. _reflns.d_resolution_high 2.4 _reflns.number_obs 10324 _reflns.number_all ? _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 7.4000000 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 48.2 _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 18.5000000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1B8I _refine.ls_number_reflns_obs 9490 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.00100 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 96.7 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2240000 _refine.ls_R_factor_R_free 0.3040000 _refine.ls_R_factor_R_free_error 0.014 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.4 _refine.ls_number_reflns_R_free 508 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 42.7 _refine.aniso_B[1][1] -8.30 _refine.aniso_B[2][2] -8.30 _refine.aniso_B[3][3] 16.61 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1B8I _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 8.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.28 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1028 _refine_hist.pdbx_number_atoms_nucleic_acid 609 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1747 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 0.95 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 21.3 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.96 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 6.74 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 9.30 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 7.22 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 9.89 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.51 _refine_ls_shell.number_reflns_R_work 1052 _refine_ls_shell.R_factor_R_work 0.3200000 _refine_ls_shell.percent_reflns_obs 92.6 _refine_ls_shell.R_factor_R_free 0.3240000 _refine_ls_shell.R_factor_R_free_error 0.057 _refine_ls_shell.percent_reflns_R_free 4.5 _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 ? TOPH19.SOL 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1B8I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1B8I _struct.title 'STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1B8I _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'DNA BINDING, HOMEODOMAIN, HOMEOTIC PROTEINS, DEVELOPMENT, SPECIFICITY, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP UBX_DROME 3 P83949 ? ? ? 2 UNP EXD_DROME 4 P40427 ? ? ? 3 PDB 1B8I 1 1B8I ? ? ? 4 PDB 1B8I 2 1B8I ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1B8I A 1 ? 81 ? P83949 233 ? 313 ? 82 162 2 2 1B8I B 1 ? 63 ? P40427 238 ? 300 ? 201 263 3 3 1B8I C 1 ? 15 ? 1B8I 1 ? 15 ? 1 15 4 4 1B8I D 1 ? 15 ? 1B8I 16 ? 30 ? 16 30 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1B8I _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 58 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P83949 _struct_ref_seq_dif.db_mon_id CYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 290 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 139 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG C 29 ? THR C 41 ? ARG A 110 THR A 122 1 ? 13 HELX_P HELX_P2 2 ARG C 47 ? LEU C 57 ? ARG A 128 LEU A 138 1 ? 11 HELX_P HELX_P3 3 GLU C 61 ? LYS C 76 ? GLU A 142 LYS A 157 1 ? 16 HELX_P HELX_P4 4 LYS D 10 ? SER D 22 ? LYS B 210 SER B 222 1 ? 13 HELX_P HELX_P5 5 ALA D 33 ? CYS D 41 ? ALA B 233 CYS B 241 1 ? 9 HELX_P HELX_P6 6 VAL D 45 ? LYS D 60 ? VAL B 245 LYS B 260 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 15 N1 ? ? C DC 3 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 15 O6 ? ? C DC 3 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 15 N2 ? ? C DC 3 D DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 14 N3 ? ? C DG 4 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 14 O2 ? ? C DG 4 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 14 N4 ? ? C DG 4 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 13 N1 ? ? C DC 5 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 13 O6 ? ? C DC 5 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 13 N2 ? ? C DC 5 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 12 N1 ? ? C DC 6 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 12 O6 ? ? C DC 6 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 12 N2 ? ? C DC 6 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 7 D DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 7 D DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 10 N1 ? ? C DT 8 D DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 10 N6 ? ? C DT 8 D DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 9 N3 ? ? C DA 9 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 9 O4 ? ? C DA 9 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 8 N3 ? ? C DA 10 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 8 O4 ? ? C DA 10 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 7 N3 ? ? C DA 11 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 7 O4 ? ? C DA 11 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 6 N1 ? ? C DT 12 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 6 N6 ? ? C DT 12 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 4 N3 ? ? C DA 14 D DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 4 O4 ? ? C DA 14 D DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 3 N1 ? ? C DC 15 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 3 O6 ? ? C DC 15 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 3 N2 ? ? C DC 15 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N2 _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 DC _pdbx_validate_symm_contact.auth_seq_id_2 17 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_565 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 91 ? ? -42.16 -18.34 2 1 GLU A 159 ? ? -157.69 30.83 3 1 PHE B 208 ? ? 82.95 156.94 4 1 SER B 222 ? ? -63.32 -74.36 5 1 ASN B 226 ? ? -157.37 75.35 6 1 PRO B 227 ? ? -69.32 40.48 7 1 SER B 230 ? ? -46.03 150.96 8 1 ILE B 243 ? ? -76.78 -165.77 9 1 LYS B 261 ? ? -92.64 43.33 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id D _pdbx_validate_planes.auth_seq_id 28 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.051 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 82 ? C GLN 1 2 1 Y 1 A ALA 83 ? C ALA 2 3 1 Y 1 A SER 84 ? C SER 3 4 1 Y 1 A ASN 85 ? C ASN 4 5 1 Y 1 A HIS 86 ? C HIS 5 6 1 Y 1 A THR 87 ? C THR 6 7 1 Y 1 A ILE 94 ? C ILE 13 8 1 Y 1 A ALA 95 ? C ALA 14 9 1 Y 1 A GLY 96 ? C GLY 15 10 1 Y 1 A THR 97 ? C THR 16 11 1 Y 1 A ASN 98 ? C ASN 17 12 1 Y 1 A GLY 99 ? C GLY 18 13 1 Y 1 A LEU 100 ? C LEU 19 14 1 Y 1 A ARG 101 ? C ARG 20 15 1 Y 1 A ARG 102 ? C ARG 21 16 1 Y 1 A ARG 103 ? C ARG 22 17 1 Y 1 A GLY 104 ? C GLY 23 18 1 Y 1 A GLN 161 ? C GLN 80 19 1 Y 1 A ALA 162 ? C ALA 81 20 1 Y 1 B ALA 201 ? D ALA 1 21 1 Y 1 B ARG 202 ? D ARG 2 22 1 Y 1 B ARG 203 ? D ARG 3 23 1 Y 1 B LYS 204 ? D LYS 4 24 1 Y 1 B ILE 263 ? D ILE 63 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CYS N N N N 58 CYS CA C N R 59 CYS C C N N 60 CYS O O N N 61 CYS CB C N N 62 CYS SG S N N 63 CYS OXT O N N 64 CYS H H N N 65 CYS H2 H N N 66 CYS HA H N N 67 CYS HB2 H N N 68 CYS HB3 H N N 69 CYS HG H N N 70 CYS HXT H N N 71 DA OP3 O N N 72 DA P P N N 73 DA OP1 O N N 74 DA OP2 O N N 75 DA "O5'" O N N 76 DA "C5'" C N N 77 DA "C4'" C N R 78 DA "O4'" O N N 79 DA "C3'" C N S 80 DA "O3'" O N N 81 DA "C2'" C N N 82 DA "C1'" C N R 83 DA N9 N Y N 84 DA C8 C Y N 85 DA N7 N Y N 86 DA C5 C Y N 87 DA C6 C Y N 88 DA N6 N N N 89 DA N1 N Y N 90 DA C2 C Y N 91 DA N3 N Y N 92 DA C4 C Y N 93 DA HOP3 H N N 94 DA HOP2 H N N 95 DA "H5'" H N N 96 DA "H5''" H N N 97 DA "H4'" H N N 98 DA "H3'" H N N 99 DA "HO3'" H N N 100 DA "H2'" H N N 101 DA "H2''" H N N 102 DA "H1'" H N N 103 DA H8 H N N 104 DA H61 H N N 105 DA H62 H N N 106 DA H2 H N N 107 DC OP3 O N N 108 DC P P N N 109 DC OP1 O N N 110 DC OP2 O N N 111 DC "O5'" O N N 112 DC "C5'" C N N 113 DC "C4'" C N R 114 DC "O4'" O N N 115 DC "C3'" C N S 116 DC "O3'" O N N 117 DC "C2'" C N N 118 DC "C1'" C N R 119 DC N1 N N N 120 DC C2 C N N 121 DC O2 O N N 122 DC N3 N N N 123 DC C4 C N N 124 DC N4 N N N 125 DC C5 C N N 126 DC C6 C N N 127 DC HOP3 H N N 128 DC HOP2 H N N 129 DC "H5'" H N N 130 DC "H5''" H N N 131 DC "H4'" H N N 132 DC "H3'" H N N 133 DC "HO3'" H N N 134 DC "H2'" H N N 135 DC "H2''" H N N 136 DC "H1'" H N N 137 DC H41 H N N 138 DC H42 H N N 139 DC H5 H N N 140 DC H6 H N N 141 DG OP3 O N N 142 DG P P N N 143 DG OP1 O N N 144 DG OP2 O N N 145 DG "O5'" O N N 146 DG "C5'" C N N 147 DG "C4'" C N R 148 DG "O4'" O N N 149 DG "C3'" C N S 150 DG "O3'" O N N 151 DG "C2'" C N N 152 DG "C1'" C N R 153 DG N9 N Y N 154 DG C8 C Y N 155 DG N7 N Y N 156 DG C5 C Y N 157 DG C6 C N N 158 DG O6 O N N 159 DG N1 N N N 160 DG C2 C N N 161 DG N2 N N N 162 DG N3 N N N 163 DG C4 C Y N 164 DG HOP3 H N N 165 DG HOP2 H N N 166 DG "H5'" H N N 167 DG "H5''" H N N 168 DG "H4'" H N N 169 DG "H3'" H N N 170 DG "HO3'" H N N 171 DG "H2'" H N N 172 DG "H2''" H N N 173 DG "H1'" H N N 174 DG H8 H N N 175 DG H1 H N N 176 DG H21 H N N 177 DG H22 H N N 178 DT OP3 O N N 179 DT P P N N 180 DT OP1 O N N 181 DT OP2 O N N 182 DT "O5'" O N N 183 DT "C5'" C N N 184 DT "C4'" C N R 185 DT "O4'" O N N 186 DT "C3'" C N S 187 DT "O3'" O N N 188 DT "C2'" C N N 189 DT "C1'" C N R 190 DT N1 N N N 191 DT C2 C N N 192 DT O2 O N N 193 DT N3 N N N 194 DT C4 C N N 195 DT O4 O N N 196 DT C5 C N N 197 DT C7 C N N 198 DT C6 C N N 199 DT HOP3 H N N 200 DT HOP2 H N N 201 DT "H5'" H N N 202 DT "H5''" H N N 203 DT "H4'" H N N 204 DT "H3'" H N N 205 DT "HO3'" H N N 206 DT "H2'" H N N 207 DT "H2''" H N N 208 DT "H1'" H N N 209 DT H3 H N N 210 DT H71 H N N 211 DT H72 H N N 212 DT H73 H N N 213 DT H6 H N N 214 GLN N N N N 215 GLN CA C N S 216 GLN C C N N 217 GLN O O N N 218 GLN CB C N N 219 GLN CG C N N 220 GLN CD C N N 221 GLN OE1 O N N 222 GLN NE2 N N N 223 GLN OXT O N N 224 GLN H H N N 225 GLN H2 H N N 226 GLN HA H N N 227 GLN HB2 H N N 228 GLN HB3 H N N 229 GLN HG2 H N N 230 GLN HG3 H N N 231 GLN HE21 H N N 232 GLN HE22 H N N 233 GLN HXT H N N 234 GLU N N N N 235 GLU CA C N S 236 GLU C C N N 237 GLU O O N N 238 GLU CB C N N 239 GLU CG C N N 240 GLU CD C N N 241 GLU OE1 O N N 242 GLU OE2 O N N 243 GLU OXT O N N 244 GLU H H N N 245 GLU H2 H N N 246 GLU HA H N N 247 GLU HB2 H N N 248 GLU HB3 H N N 249 GLU HG2 H N N 250 GLU HG3 H N N 251 GLU HE2 H N N 252 GLU HXT H N N 253 GLY N N N N 254 GLY CA C N N 255 GLY C C N N 256 GLY O O N N 257 GLY OXT O N N 258 GLY H H N N 259 GLY H2 H N N 260 GLY HA2 H N N 261 GLY HA3 H N N 262 GLY HXT H N N 263 HIS N N N N 264 HIS CA C N S 265 HIS C C N N 266 HIS O O N N 267 HIS CB C N N 268 HIS CG C Y N 269 HIS ND1 N Y N 270 HIS CD2 C Y N 271 HIS CE1 C Y N 272 HIS NE2 N Y N 273 HIS OXT O N N 274 HIS H H N N 275 HIS H2 H N N 276 HIS HA H N N 277 HIS HB2 H N N 278 HIS HB3 H N N 279 HIS HD1 H N N 280 HIS HD2 H N N 281 HIS HE1 H N N 282 HIS HE2 H N N 283 HIS HXT H N N 284 HOH O O N N 285 HOH H1 H N N 286 HOH H2 H N N 287 ILE N N N N 288 ILE CA C N S 289 ILE C C N N 290 ILE O O N N 291 ILE CB C N S 292 ILE CG1 C N N 293 ILE CG2 C N N 294 ILE CD1 C N N 295 ILE OXT O N N 296 ILE H H N N 297 ILE H2 H N N 298 ILE HA H N N 299 ILE HB H N N 300 ILE HG12 H N N 301 ILE HG13 H N N 302 ILE HG21 H N N 303 ILE HG22 H N N 304 ILE HG23 H N N 305 ILE HD11 H N N 306 ILE HD12 H N N 307 ILE HD13 H N N 308 ILE HXT H N N 309 LEU N N N N 310 LEU CA C N S 311 LEU C C N N 312 LEU O O N N 313 LEU CB C N N 314 LEU CG C N N 315 LEU CD1 C N N 316 LEU CD2 C N N 317 LEU OXT O N N 318 LEU H H N N 319 LEU H2 H N N 320 LEU HA H N N 321 LEU HB2 H N N 322 LEU HB3 H N N 323 LEU HG H N N 324 LEU HD11 H N N 325 LEU HD12 H N N 326 LEU HD13 H N N 327 LEU HD21 H N N 328 LEU HD22 H N N 329 LEU HD23 H N N 330 LEU HXT H N N 331 LYS N N N N 332 LYS CA C N S 333 LYS C C N N 334 LYS O O N N 335 LYS CB C N N 336 LYS CG C N N 337 LYS CD C N N 338 LYS CE C N N 339 LYS NZ N N N 340 LYS OXT O N N 341 LYS H H N N 342 LYS H2 H N N 343 LYS HA H N N 344 LYS HB2 H N N 345 LYS HB3 H N N 346 LYS HG2 H N N 347 LYS HG3 H N N 348 LYS HD2 H N N 349 LYS HD3 H N N 350 LYS HE2 H N N 351 LYS HE3 H N N 352 LYS HZ1 H N N 353 LYS HZ2 H N N 354 LYS HZ3 H N N 355 LYS HXT H N N 356 MET N N N N 357 MET CA C N S 358 MET C C N N 359 MET O O N N 360 MET CB C N N 361 MET CG C N N 362 MET SD S N N 363 MET CE C N N 364 MET OXT O N N 365 MET H H N N 366 MET H2 H N N 367 MET HA H N N 368 MET HB2 H N N 369 MET HB3 H N N 370 MET HG2 H N N 371 MET HG3 H N N 372 MET HE1 H N N 373 MET HE2 H N N 374 MET HE3 H N N 375 MET HXT H N N 376 PHE N N N N 377 PHE CA C N S 378 PHE C C N N 379 PHE O O N N 380 PHE CB C N N 381 PHE CG C Y N 382 PHE CD1 C Y N 383 PHE CD2 C Y N 384 PHE CE1 C Y N 385 PHE CE2 C Y N 386 PHE CZ C Y N 387 PHE OXT O N N 388 PHE H H N N 389 PHE H2 H N N 390 PHE HA H N N 391 PHE HB2 H N N 392 PHE HB3 H N N 393 PHE HD1 H N N 394 PHE HD2 H N N 395 PHE HE1 H N N 396 PHE HE2 H N N 397 PHE HZ H N N 398 PHE HXT H N N 399 PRO N N N N 400 PRO CA C N S 401 PRO C C N N 402 PRO O O N N 403 PRO CB C N N 404 PRO CG C N N 405 PRO CD C N N 406 PRO OXT O N N 407 PRO H H N N 408 PRO HA H N N 409 PRO HB2 H N N 410 PRO HB3 H N N 411 PRO HG2 H N N 412 PRO HG3 H N N 413 PRO HD2 H N N 414 PRO HD3 H N N 415 PRO HXT H N N 416 SER N N N N 417 SER CA C N S 418 SER C C N N 419 SER O O N N 420 SER CB C N N 421 SER OG O N N 422 SER OXT O N N 423 SER H H N N 424 SER H2 H N N 425 SER HA H N N 426 SER HB2 H N N 427 SER HB3 H N N 428 SER HG H N N 429 SER HXT H N N 430 THR N N N N 431 THR CA C N S 432 THR C C N N 433 THR O O N N 434 THR CB C N R 435 THR OG1 O N N 436 THR CG2 C N N 437 THR OXT O N N 438 THR H H N N 439 THR H2 H N N 440 THR HA H N N 441 THR HB H N N 442 THR HG1 H N N 443 THR HG21 H N N 444 THR HG22 H N N 445 THR HG23 H N N 446 THR HXT H N N 447 TRP N N N N 448 TRP CA C N S 449 TRP C C N N 450 TRP O O N N 451 TRP CB C N N 452 TRP CG C Y N 453 TRP CD1 C Y N 454 TRP CD2 C Y N 455 TRP NE1 N Y N 456 TRP CE2 C Y N 457 TRP CE3 C Y N 458 TRP CZ2 C Y N 459 TRP CZ3 C Y N 460 TRP CH2 C Y N 461 TRP OXT O N N 462 TRP H H N N 463 TRP H2 H N N 464 TRP HA H N N 465 TRP HB2 H N N 466 TRP HB3 H N N 467 TRP HD1 H N N 468 TRP HE1 H N N 469 TRP HE3 H N N 470 TRP HZ2 H N N 471 TRP HZ3 H N N 472 TRP HH2 H N N 473 TRP HXT H N N 474 TYR N N N N 475 TYR CA C N S 476 TYR C C N N 477 TYR O O N N 478 TYR CB C N N 479 TYR CG C Y N 480 TYR CD1 C Y N 481 TYR CD2 C Y N 482 TYR CE1 C Y N 483 TYR CE2 C Y N 484 TYR CZ C Y N 485 TYR OH O N N 486 TYR OXT O N N 487 TYR H H N N 488 TYR H2 H N N 489 TYR HA H N N 490 TYR HB2 H N N 491 TYR HB3 H N N 492 TYR HD1 H N N 493 TYR HD2 H N N 494 TYR HE1 H N N 495 TYR HE2 H N N 496 TYR HH H N N 497 TYR HXT H N N 498 VAL N N N N 499 VAL CA C N S 500 VAL C C N N 501 VAL O O N N 502 VAL CB C N N 503 VAL CG1 C N N 504 VAL CG2 C N N 505 VAL OXT O N N 506 VAL H H N N 507 VAL H2 H N N 508 VAL HA H N N 509 VAL HB H N N 510 VAL HG11 H N N 511 VAL HG12 H N N 512 VAL HG13 H N N 513 VAL HG21 H N N 514 VAL HG22 H N N 515 VAL HG23 H N N 516 VAL HXT H N N 517 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CYS N CA sing N N 55 CYS N H sing N N 56 CYS N H2 sing N N 57 CYS CA C sing N N 58 CYS CA CB sing N N 59 CYS CA HA sing N N 60 CYS C O doub N N 61 CYS C OXT sing N N 62 CYS CB SG sing N N 63 CYS CB HB2 sing N N 64 CYS CB HB3 sing N N 65 CYS SG HG sing N N 66 CYS OXT HXT sing N N 67 DA OP3 P sing N N 68 DA OP3 HOP3 sing N N 69 DA P OP1 doub N N 70 DA P OP2 sing N N 71 DA P "O5'" sing N N 72 DA OP2 HOP2 sing N N 73 DA "O5'" "C5'" sing N N 74 DA "C5'" "C4'" sing N N 75 DA "C5'" "H5'" sing N N 76 DA "C5'" "H5''" sing N N 77 DA "C4'" "O4'" sing N N 78 DA "C4'" "C3'" sing N N 79 DA "C4'" "H4'" sing N N 80 DA "O4'" "C1'" sing N N 81 DA "C3'" "O3'" sing N N 82 DA "C3'" "C2'" sing N N 83 DA "C3'" "H3'" sing N N 84 DA "O3'" "HO3'" sing N N 85 DA "C2'" "C1'" sing N N 86 DA "C2'" "H2'" sing N N 87 DA "C2'" "H2''" sing N N 88 DA "C1'" N9 sing N N 89 DA "C1'" "H1'" sing N N 90 DA N9 C8 sing Y N 91 DA N9 C4 sing Y N 92 DA C8 N7 doub Y N 93 DA C8 H8 sing N N 94 DA N7 C5 sing Y N 95 DA C5 C6 sing Y N 96 DA C5 C4 doub Y N 97 DA C6 N6 sing N N 98 DA C6 N1 doub Y N 99 DA N6 H61 sing N N 100 DA N6 H62 sing N N 101 DA N1 C2 sing Y N 102 DA C2 N3 doub Y N 103 DA C2 H2 sing N N 104 DA N3 C4 sing Y N 105 DC OP3 P sing N N 106 DC OP3 HOP3 sing N N 107 DC P OP1 doub N N 108 DC P OP2 sing N N 109 DC P "O5'" sing N N 110 DC OP2 HOP2 sing N N 111 DC "O5'" "C5'" sing N N 112 DC "C5'" "C4'" sing N N 113 DC "C5'" "H5'" sing N N 114 DC "C5'" "H5''" sing N N 115 DC "C4'" "O4'" sing N N 116 DC "C4'" "C3'" sing N N 117 DC "C4'" "H4'" sing N N 118 DC "O4'" "C1'" sing N N 119 DC "C3'" "O3'" sing N N 120 DC "C3'" "C2'" sing N N 121 DC "C3'" "H3'" sing N N 122 DC "O3'" "HO3'" sing N N 123 DC "C2'" "C1'" sing N N 124 DC "C2'" "H2'" sing N N 125 DC "C2'" "H2''" sing N N 126 DC "C1'" N1 sing N N 127 DC "C1'" "H1'" sing N N 128 DC N1 C2 sing N N 129 DC N1 C6 sing N N 130 DC C2 O2 doub N N 131 DC C2 N3 sing N N 132 DC N3 C4 doub N N 133 DC C4 N4 sing N N 134 DC C4 C5 sing N N 135 DC N4 H41 sing N N 136 DC N4 H42 sing N N 137 DC C5 C6 doub N N 138 DC C5 H5 sing N N 139 DC C6 H6 sing N N 140 DG OP3 P sing N N 141 DG OP3 HOP3 sing N N 142 DG P OP1 doub N N 143 DG P OP2 sing N N 144 DG P "O5'" sing N N 145 DG OP2 HOP2 sing N N 146 DG "O5'" "C5'" sing N N 147 DG "C5'" "C4'" sing N N 148 DG "C5'" "H5'" sing N N 149 DG "C5'" "H5''" sing N N 150 DG "C4'" "O4'" sing N N 151 DG "C4'" "C3'" sing N N 152 DG "C4'" "H4'" sing N N 153 DG "O4'" "C1'" sing N N 154 DG "C3'" "O3'" sing N N 155 DG "C3'" "C2'" sing N N 156 DG "C3'" "H3'" sing N N 157 DG "O3'" "HO3'" sing N N 158 DG "C2'" "C1'" sing N N 159 DG "C2'" "H2'" sing N N 160 DG "C2'" "H2''" sing N N 161 DG "C1'" N9 sing N N 162 DG "C1'" "H1'" sing N N 163 DG N9 C8 sing Y N 164 DG N9 C4 sing Y N 165 DG C8 N7 doub Y N 166 DG C8 H8 sing N N 167 DG N7 C5 sing Y N 168 DG C5 C6 sing N N 169 DG C5 C4 doub Y N 170 DG C6 O6 doub N N 171 DG C6 N1 sing N N 172 DG N1 C2 sing N N 173 DG N1 H1 sing N N 174 DG C2 N2 sing N N 175 DG C2 N3 doub N N 176 DG N2 H21 sing N N 177 DG N2 H22 sing N N 178 DG N3 C4 sing N N 179 DT OP3 P sing N N 180 DT OP3 HOP3 sing N N 181 DT P OP1 doub N N 182 DT P OP2 sing N N 183 DT P "O5'" sing N N 184 DT OP2 HOP2 sing N N 185 DT "O5'" "C5'" sing N N 186 DT "C5'" "C4'" sing N N 187 DT "C5'" "H5'" sing N N 188 DT "C5'" "H5''" sing N N 189 DT "C4'" "O4'" sing N N 190 DT "C4'" "C3'" sing N N 191 DT "C4'" "H4'" sing N N 192 DT "O4'" "C1'" sing N N 193 DT "C3'" "O3'" sing N N 194 DT "C3'" "C2'" sing N N 195 DT "C3'" "H3'" sing N N 196 DT "O3'" "HO3'" sing N N 197 DT "C2'" "C1'" sing N N 198 DT "C2'" "H2'" sing N N 199 DT "C2'" "H2''" sing N N 200 DT "C1'" N1 sing N N 201 DT "C1'" "H1'" sing N N 202 DT N1 C2 sing N N 203 DT N1 C6 sing N N 204 DT C2 O2 doub N N 205 DT C2 N3 sing N N 206 DT N3 C4 sing N N 207 DT N3 H3 sing N N 208 DT C4 O4 doub N N 209 DT C4 C5 sing N N 210 DT C5 C7 sing N N 211 DT C5 C6 doub N N 212 DT C7 H71 sing N N 213 DT C7 H72 sing N N 214 DT C7 H73 sing N N 215 DT C6 H6 sing N N 216 GLN N CA sing N N 217 GLN N H sing N N 218 GLN N H2 sing N N 219 GLN CA C sing N N 220 GLN CA CB sing N N 221 GLN CA HA sing N N 222 GLN C O doub N N 223 GLN C OXT sing N N 224 GLN CB CG sing N N 225 GLN CB HB2 sing N N 226 GLN CB HB3 sing N N 227 GLN CG CD sing N N 228 GLN CG HG2 sing N N 229 GLN CG HG3 sing N N 230 GLN CD OE1 doub N N 231 GLN CD NE2 sing N N 232 GLN NE2 HE21 sing N N 233 GLN NE2 HE22 sing N N 234 GLN OXT HXT sing N N 235 GLU N CA sing N N 236 GLU N H sing N N 237 GLU N H2 sing N N 238 GLU CA C sing N N 239 GLU CA CB sing N N 240 GLU CA HA sing N N 241 GLU C O doub N N 242 GLU C OXT sing N N 243 GLU CB CG sing N N 244 GLU CB HB2 sing N N 245 GLU CB HB3 sing N N 246 GLU CG CD sing N N 247 GLU CG HG2 sing N N 248 GLU CG HG3 sing N N 249 GLU CD OE1 doub N N 250 GLU CD OE2 sing N N 251 GLU OE2 HE2 sing N N 252 GLU OXT HXT sing N N 253 GLY N CA sing N N 254 GLY N H sing N N 255 GLY N H2 sing N N 256 GLY CA C sing N N 257 GLY CA HA2 sing N N 258 GLY CA HA3 sing N N 259 GLY C O doub N N 260 GLY C OXT sing N N 261 GLY OXT HXT sing N N 262 HIS N CA sing N N 263 HIS N H sing N N 264 HIS N H2 sing N N 265 HIS CA C sing N N 266 HIS CA CB sing N N 267 HIS CA HA sing N N 268 HIS C O doub N N 269 HIS C OXT sing N N 270 HIS CB CG sing N N 271 HIS CB HB2 sing N N 272 HIS CB HB3 sing N N 273 HIS CG ND1 sing Y N 274 HIS CG CD2 doub Y N 275 HIS ND1 CE1 doub Y N 276 HIS ND1 HD1 sing N N 277 HIS CD2 NE2 sing Y N 278 HIS CD2 HD2 sing N N 279 HIS CE1 NE2 sing Y N 280 HIS CE1 HE1 sing N N 281 HIS NE2 HE2 sing N N 282 HIS OXT HXT sing N N 283 HOH O H1 sing N N 284 HOH O H2 sing N N 285 ILE N CA sing N N 286 ILE N H sing N N 287 ILE N H2 sing N N 288 ILE CA C sing N N 289 ILE CA CB sing N N 290 ILE CA HA sing N N 291 ILE C O doub N N 292 ILE C OXT sing N N 293 ILE CB CG1 sing N N 294 ILE CB CG2 sing N N 295 ILE CB HB sing N N 296 ILE CG1 CD1 sing N N 297 ILE CG1 HG12 sing N N 298 ILE CG1 HG13 sing N N 299 ILE CG2 HG21 sing N N 300 ILE CG2 HG22 sing N N 301 ILE CG2 HG23 sing N N 302 ILE CD1 HD11 sing N N 303 ILE CD1 HD12 sing N N 304 ILE CD1 HD13 sing N N 305 ILE OXT HXT sing N N 306 LEU N CA sing N N 307 LEU N H sing N N 308 LEU N H2 sing N N 309 LEU CA C sing N N 310 LEU CA CB sing N N 311 LEU CA HA sing N N 312 LEU C O doub N N 313 LEU C OXT sing N N 314 LEU CB CG sing N N 315 LEU CB HB2 sing N N 316 LEU CB HB3 sing N N 317 LEU CG CD1 sing N N 318 LEU CG CD2 sing N N 319 LEU CG HG sing N N 320 LEU CD1 HD11 sing N N 321 LEU CD1 HD12 sing N N 322 LEU CD1 HD13 sing N N 323 LEU CD2 HD21 sing N N 324 LEU CD2 HD22 sing N N 325 LEU CD2 HD23 sing N N 326 LEU OXT HXT sing N N 327 LYS N CA sing N N 328 LYS N H sing N N 329 LYS N H2 sing N N 330 LYS CA C sing N N 331 LYS CA CB sing N N 332 LYS CA HA sing N N 333 LYS C O doub N N 334 LYS C OXT sing N N 335 LYS CB CG sing N N 336 LYS CB HB2 sing N N 337 LYS CB HB3 sing N N 338 LYS CG CD sing N N 339 LYS CG HG2 sing N N 340 LYS CG HG3 sing N N 341 LYS CD CE sing N N 342 LYS CD HD2 sing N N 343 LYS CD HD3 sing N N 344 LYS CE NZ sing N N 345 LYS CE HE2 sing N N 346 LYS CE HE3 sing N N 347 LYS NZ HZ1 sing N N 348 LYS NZ HZ2 sing N N 349 LYS NZ HZ3 sing N N 350 LYS OXT HXT sing N N 351 MET N CA sing N N 352 MET N H sing N N 353 MET N H2 sing N N 354 MET CA C sing N N 355 MET CA CB sing N N 356 MET CA HA sing N N 357 MET C O doub N N 358 MET C OXT sing N N 359 MET CB CG sing N N 360 MET CB HB2 sing N N 361 MET CB HB3 sing N N 362 MET CG SD sing N N 363 MET CG HG2 sing N N 364 MET CG HG3 sing N N 365 MET SD CE sing N N 366 MET CE HE1 sing N N 367 MET CE HE2 sing N N 368 MET CE HE3 sing N N 369 MET OXT HXT sing N N 370 PHE N CA sing N N 371 PHE N H sing N N 372 PHE N H2 sing N N 373 PHE CA C sing N N 374 PHE CA CB sing N N 375 PHE CA HA sing N N 376 PHE C O doub N N 377 PHE C OXT sing N N 378 PHE CB CG sing N N 379 PHE CB HB2 sing N N 380 PHE CB HB3 sing N N 381 PHE CG CD1 doub Y N 382 PHE CG CD2 sing Y N 383 PHE CD1 CE1 sing Y N 384 PHE CD1 HD1 sing N N 385 PHE CD2 CE2 doub Y N 386 PHE CD2 HD2 sing N N 387 PHE CE1 CZ doub Y N 388 PHE CE1 HE1 sing N N 389 PHE CE2 CZ sing Y N 390 PHE CE2 HE2 sing N N 391 PHE CZ HZ sing N N 392 PHE OXT HXT sing N N 393 PRO N CA sing N N 394 PRO N CD sing N N 395 PRO N H sing N N 396 PRO CA C sing N N 397 PRO CA CB sing N N 398 PRO CA HA sing N N 399 PRO C O doub N N 400 PRO C OXT sing N N 401 PRO CB CG sing N N 402 PRO CB HB2 sing N N 403 PRO CB HB3 sing N N 404 PRO CG CD sing N N 405 PRO CG HG2 sing N N 406 PRO CG HG3 sing N N 407 PRO CD HD2 sing N N 408 PRO CD HD3 sing N N 409 PRO OXT HXT sing N N 410 SER N CA sing N N 411 SER N H sing N N 412 SER N H2 sing N N 413 SER CA C sing N N 414 SER CA CB sing N N 415 SER CA HA sing N N 416 SER C O doub N N 417 SER C OXT sing N N 418 SER CB OG sing N N 419 SER CB HB2 sing N N 420 SER CB HB3 sing N N 421 SER OG HG sing N N 422 SER OXT HXT sing N N 423 THR N CA sing N N 424 THR N H sing N N 425 THR N H2 sing N N 426 THR CA C sing N N 427 THR CA CB sing N N 428 THR CA HA sing N N 429 THR C O doub N N 430 THR C OXT sing N N 431 THR CB OG1 sing N N 432 THR CB CG2 sing N N 433 THR CB HB sing N N 434 THR OG1 HG1 sing N N 435 THR CG2 HG21 sing N N 436 THR CG2 HG22 sing N N 437 THR CG2 HG23 sing N N 438 THR OXT HXT sing N N 439 TRP N CA sing N N 440 TRP N H sing N N 441 TRP N H2 sing N N 442 TRP CA C sing N N 443 TRP CA CB sing N N 444 TRP CA HA sing N N 445 TRP C O doub N N 446 TRP C OXT sing N N 447 TRP CB CG sing N N 448 TRP CB HB2 sing N N 449 TRP CB HB3 sing N N 450 TRP CG CD1 doub Y N 451 TRP CG CD2 sing Y N 452 TRP CD1 NE1 sing Y N 453 TRP CD1 HD1 sing N N 454 TRP CD2 CE2 doub Y N 455 TRP CD2 CE3 sing Y N 456 TRP NE1 CE2 sing Y N 457 TRP NE1 HE1 sing N N 458 TRP CE2 CZ2 sing Y N 459 TRP CE3 CZ3 doub Y N 460 TRP CE3 HE3 sing N N 461 TRP CZ2 CH2 doub Y N 462 TRP CZ2 HZ2 sing N N 463 TRP CZ3 CH2 sing Y N 464 TRP CZ3 HZ3 sing N N 465 TRP CH2 HH2 sing N N 466 TRP OXT HXT sing N N 467 TYR N CA sing N N 468 TYR N H sing N N 469 TYR N H2 sing N N 470 TYR CA C sing N N 471 TYR CA CB sing N N 472 TYR CA HA sing N N 473 TYR C O doub N N 474 TYR C OXT sing N N 475 TYR CB CG sing N N 476 TYR CB HB2 sing N N 477 TYR CB HB3 sing N N 478 TYR CG CD1 doub Y N 479 TYR CG CD2 sing Y N 480 TYR CD1 CE1 sing Y N 481 TYR CD1 HD1 sing N N 482 TYR CD2 CE2 doub Y N 483 TYR CD2 HD2 sing N N 484 TYR CE1 CZ doub Y N 485 TYR CE1 HE1 sing N N 486 TYR CE2 CZ sing Y N 487 TYR CE2 HE2 sing N N 488 TYR CZ OH sing N N 489 TYR OH HH sing N N 490 TYR OXT HXT sing N N 491 VAL N CA sing N N 492 VAL N H sing N N 493 VAL N H2 sing N N 494 VAL CA C sing N N 495 VAL CA CB sing N N 496 VAL CA HA sing N N 497 VAL C O doub N N 498 VAL C OXT sing N N 499 VAL CB CG1 sing N N 500 VAL CB CG2 sing N N 501 VAL CB HB sing N N 502 VAL CG1 HG11 sing N N 503 VAL CG1 HG12 sing N N 504 VAL CG1 HG13 sing N N 505 VAL CG2 HG21 sing N N 506 VAL CG2 HG22 sing N N 507 VAL CG2 HG23 sing N N 508 VAL OXT HXT sing N N 509 # _ndb_struct_conf_na.entry_id 1B8I _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 3 1_555 B DG 15 1_555 -0.309 -0.248 -0.276 2.041 -8.397 2.988 1 C_DC3:DG30_D C 3 ? D 30 ? 19 1 1 A DG 4 1_555 B DC 14 1_555 -0.036 -0.133 0.135 1.610 -11.629 -1.434 2 C_DG4:DC29_D C 4 ? D 29 ? 19 1 1 A DC 5 1_555 B DG 13 1_555 0.217 -0.436 0.344 -9.686 -1.830 -0.603 3 C_DC5:DG28_D C 5 ? D 28 ? 19 1 1 A DC 6 1_555 B DG 12 1_555 0.157 -0.329 -0.046 2.397 -6.129 0.976 4 C_DC6:DG27_D C 6 ? D 27 ? 19 1 1 A DA 7 1_555 B DT 11 1_555 0.251 -0.047 0.023 6.287 -10.485 0.165 5 C_DA7:DT26_D C 7 ? D 26 ? 20 1 1 A DT 8 1_555 B DA 10 1_555 0.132 -0.260 -0.432 10.786 -4.247 6.114 6 C_DT8:DA25_D C 8 ? D 25 ? 20 1 1 A DA 9 1_555 B DT 9 1_555 -0.182 -0.148 0.101 10.146 -12.021 1.276 7 C_DA9:DT24_D C 9 ? D 24 ? 20 1 1 A DA 10 1_555 B DT 8 1_555 0.043 -0.227 0.167 11.486 -20.038 7.459 8 C_DA10:DT23_D C 10 ? D 23 ? 20 1 1 A DA 11 1_555 B DT 7 1_555 0.253 -0.250 0.125 5.155 -15.217 0.481 9 C_DA11:DT22_D C 11 ? D 22 ? 20 1 1 A DT 12 1_555 B DA 6 1_555 -0.015 -0.112 -0.199 8.870 -15.097 8.981 10 C_DT12:DA21_D C 12 ? D 21 ? 20 1 1 A DC 13 1_555 B DG 5 1_555 0.300 -0.083 -0.126 3.267 -10.008 0.512 11 C_DC13:DG20_D C 13 ? D 20 ? 19 1 1 A DA 14 1_555 B DT 4 1_555 0.122 -0.271 -0.067 -7.487 -9.225 4.844 12 C_DA14:DT19_D C 14 ? D 19 ? 20 1 1 A DC 15 1_555 B DG 3 1_555 -0.448 -0.420 0.359 -6.971 -16.143 1.279 13 C_DC15:DG18_D C 15 ? D 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 3 1_555 B DG 15 1_555 A DG 4 1_555 B DC 14 1_555 -0.470 0.564 3.398 -3.366 5.231 38.072 0.171 0.272 3.470 7.953 5.117 38.558 1 CC_DC3DG4:DC29DG30_DD C 3 ? D 30 ? C 4 ? D 29 ? 1 A DG 4 1_555 B DC 14 1_555 A DC 5 1_555 B DG 13 1_555 0.116 0.172 3.699 -3.154 -5.320 42.173 0.841 -0.518 3.635 -7.345 4.355 42.603 2 CC_DG4DC5:DG28DC29_DD C 4 ? D 29 ? C 5 ? D 28 ? 1 A DC 5 1_555 B DG 13 1_555 A DC 6 1_555 B DG 12 1_555 -0.077 0.250 3.018 3.314 4.351 26.497 -0.491 0.945 2.988 9.367 -7.134 27.046 3 CC_DC5DC6:DG27DG28_DD C 5 ? D 28 ? C 6 ? D 27 ? 1 A DC 6 1_555 B DG 12 1_555 A DA 7 1_555 B DT 11 1_555 -0.343 0.806 3.341 -1.419 4.904 36.626 0.585 0.342 3.428 7.757 2.245 36.968 4 CC_DC6DA7:DT26DG27_DD C 6 ? D 27 ? C 7 ? D 26 ? 1 A DA 7 1_555 B DT 11 1_555 A DT 8 1_555 B DA 10 1_555 0.702 -0.591 3.128 2.712 3.839 29.551 -1.904 -0.823 3.079 7.466 -5.275 29.914 5 CC_DA7DT8:DA25DT26_DD C 7 ? D 26 ? C 8 ? D 25 ? 1 A DT 8 1_555 B DA 10 1_555 A DA 9 1_555 B DT 9 1_555 -0.758 -0.499 3.407 -5.615 7.923 33.483 -2.094 0.373 3.288 13.405 9.501 34.824 6 CC_DT8DA9:DT24DA25_DD C 8 ? D 25 ? C 9 ? D 24 ? 1 A DA 9 1_555 B DT 9 1_555 A DA 10 1_555 B DT 8 1_555 0.685 0.032 3.245 1.149 8.521 35.740 -1.110 -0.930 3.188 13.641 -1.840 36.726 7 CC_DA9DA10:DT23DT24_DD C 9 ? D 24 ? C 10 ? D 23 ? 1 A DA 10 1_555 B DT 8 1_555 A DA 11 1_555 B DT 7 1_555 -0.104 0.062 3.394 -0.611 -1.850 37.030 0.354 0.079 3.388 -2.910 0.961 37.080 8 CC_DA10DA11:DT22DT23_DD C 10 ? D 23 ? C 11 ? D 22 ? 1 A DA 11 1_555 B DT 7 1_555 A DT 12 1_555 B DA 6 1_555 0.611 -0.650 3.229 4.502 -0.061 33.447 -1.109 -0.322 3.282 -0.106 -7.778 33.740 9 CC_DA11DT12:DA21DT22_DD C 11 ? D 22 ? C 12 ? D 21 ? 1 A DT 12 1_555 B DA 6 1_555 A DC 13 1_555 B DG 5 1_555 -0.324 -0.421 3.449 -2.419 -0.497 37.882 -0.580 0.172 3.467 -0.765 3.721 37.959 10 CC_DT12DC13:DG20DA21_DD C 12 ? D 21 ? C 13 ? D 20 ? 1 A DC 13 1_555 B DG 5 1_555 A DA 14 1_555 B DT 4 1_555 0.656 0.359 3.452 1.958 10.775 35.069 -1.021 -0.753 3.441 17.365 -3.155 36.687 11 CC_DC13DA14:DT19DG20_DD C 13 ? D 20 ? C 14 ? D 19 ? 1 A DA 14 1_555 B DT 4 1_555 A DC 15 1_555 B DG 3 1_555 -1.259 0.784 3.349 -7.582 -0.585 32.979 1.449 0.860 3.529 -1.014 13.139 33.820 12 CC_DA14DC15:DG18DT19_DD C 14 ? D 19 ? C 15 ? D 18 ? # _atom_sites.entry_id 1B8I _atom_sites.fract_transf_matrix[1][1] 0.014403 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014403 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009930 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_