HEADER HYDROLASE 06-MAR-99 1B90 TITLE BACILLUS CEREUS BETA-AMYLASE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (BETA-AMYLASE); COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS HYDROLASE(O-GLYCOSYL), HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MIKAMI,M.ADACHI,T.KAGE,E.SARIKAYA,T.NANMORI,R.SHINKE,S.UTSUMI REVDAT 7 13-NOV-24 1B90 1 REMARK REVDAT 6 27-DEC-23 1B90 1 REMARK LINK REVDAT 5 24-FEB-09 1B90 1 VERSN REVDAT 4 01-APR-03 1B90 1 JRNL REVDAT 3 14-JUN-00 1B90 1 DBREF HEADER REMARK REVDAT 2 22-JUN-99 1B90 1 JRNL REVDAT 1 15-MAR-99 1B90 0 JRNL AUTH B.MIKAMI,M.ADACHI,T.KAGE,E.SARIKAYA,T.NANMORI,R.SHINKE, JRNL AUTH 2 S.UTSUMI JRNL TITL STRUCTURE OF RAW STARCH-DIGESTING BACILLUS CEREUS JRNL TITL 2 BETA-AMYLASE COMPLEXED WITH MALTOSE. JRNL REF BIOCHEMISTRY V. 38 7050 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10353816 JRNL DOI 10.1021/BI9829377 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 20851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1632 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.75 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4119 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.92000 REMARK 3 B22 (A**2) : -2.94000 REMARK 3 B33 (A**2) : 0.01900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.29300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 3.120 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.25 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : PARAM1.CHO REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH1.CHO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-97 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CARBON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 2.470 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION AGAINST REMARK 280 0.1 M ACETATE BUFFER PH 4.6, 18% PEG 6000 AND 5% SATN. AMMONIUM REMARK 280 SULFATE WITH A PROTEIN CONCENTRATION OF 10MG/ML. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.05150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 89 NE2 HIS A 89 CD2 -0.066 REMARK 500 HIS A 264 NE2 HIS A 264 CD2 -0.082 REMARK 500 HIS A 273 NE2 HIS A 273 CD2 -0.077 REMARK 500 HIS A 302 NE2 HIS A 302 CD2 -0.072 REMARK 500 HIS A 463 NE2 HIS A 463 CD2 -0.070 REMARK 500 HIS A 512 NE2 HIS A 512 CD2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 14 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP A 28 CD1 - CG - CD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 TRP A 28 CB - CG - CD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 TRP A 28 CE2 - CD2 - CG ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP A 28 CG - CD2 - CE3 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 37 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 37 CE2 - CD2 - CG ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP A 51 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 51 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 52 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 52 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 106 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 106 CB - CG - CD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 TRP A 106 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP A 106 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 108 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 108 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 108 CG - CD2 - CE3 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 TRP A 206 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 206 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP A 221 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 221 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 THR A 223 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 TRP A 256 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 256 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 293 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 293 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 THR A 330 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 TYR A 340 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR A 378 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 403 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 MET A 421 CA - CB - CG ANGL. DEV. = 10.7 DEGREES REMARK 500 TRP A 449 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 449 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR A 454 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP A 467 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 GLU A 476 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG A 477 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 TRP A 495 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP A 495 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP A 502 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 502 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP A 516 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 516 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -149.53 -158.42 REMARK 500 GLU A 56 55.68 -161.79 REMARK 500 VAL A 95 109.77 -12.32 REMARK 500 ASP A 98 38.33 -72.09 REMARK 500 CYS A 99 165.50 169.83 REMARK 500 ASN A 100 83.14 -163.84 REMARK 500 TRP A 108 -8.72 -58.16 REMARK 500 TYR A 117 -167.49 -107.27 REMARK 500 ALA A 170 18.65 58.31 REMARK 500 ARG A 174 -174.99 -170.36 REMARK 500 GLN A 193 45.47 -108.20 REMARK 500 THR A 223 -161.58 -110.98 REMARK 500 LYS A 224 51.10 -154.78 REMARK 500 ASN A 243 -12.72 -168.28 REMARK 500 THR A 279 -70.69 -61.17 REMARK 500 ILE A 300 79.12 -117.43 REMARK 500 LYS A 324 61.84 61.68 REMARK 500 TYR A 398 -69.84 -29.34 REMARK 500 ASN A 404 100.32 -167.76 REMARK 500 PRO A 474 99.03 -66.38 REMARK 500 THR A 510 -164.53 -124.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 930 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 56 OE2 REMARK 620 2 GLU A 56 OE1 38.8 REMARK 620 3 ASP A 60 OD1 85.4 124.0 REMARK 620 4 GLU A 141 OE1 114.8 107.3 88.6 REMARK 620 5 GLU A 144 OE1 138.5 137.1 84.0 104.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: C1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: C2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 920 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 921 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 930 DBREF 1B90 A 1 516 UNP P36924 AMYB_BACCE 31 546 SEQRES 1 A 516 ALA VAL ASN GLY LYS GLY MET ASN PRO ASP TYR LYS ALA SEQRES 2 A 516 TYR LEU MET ALA PRO LEU LYS LYS ILE PRO GLU VAL THR SEQRES 3 A 516 ASN TRP GLU THR PHE GLU ASN ASP LEU ARG TRP ALA LYS SEQRES 4 A 516 GLN ASN GLY PHE TYR ALA ILE THR VAL ASP PHE TRP TRP SEQRES 5 A 516 GLY ASP MET GLU LYS ASN GLY ASP GLN GLN PHE ASP PHE SEQRES 6 A 516 SER TYR ALA GLN ARG PHE ALA GLN SER VAL LYS ASN ALA SEQRES 7 A 516 GLY MET LYS MET ILE PRO ILE ILE SER THR HIS GLN CYS SEQRES 8 A 516 GLY GLY ASN VAL GLY ASP ASP CYS ASN VAL PRO ILE PRO SEQRES 9 A 516 SER TRP VAL TRP ASN GLN LYS SER ASP ASP SER LEU TYR SEQRES 10 A 516 PHE LYS SER GLU THR GLY THR VAL ASN LYS GLU THR LEU SEQRES 11 A 516 ASN PRO LEU ALA SER ASP VAL ILE ARG LYS GLU TYR GLY SEQRES 12 A 516 GLU LEU TYR THR ALA PHE ALA ALA ALA MET LYS PRO TYR SEQRES 13 A 516 LYS ASP VAL ILE ALA LYS ILE TYR LEU SER GLY GLY PRO SEQRES 14 A 516 ALA GLY GLU LEU ARG TYR PRO SER TYR THR THR SER ASP SEQRES 15 A 516 GLY THR GLY TYR PRO SER ARG GLY LYS PHE GLN ALA TYR SEQRES 16 A 516 THR GLU PHE ALA LYS SER LYS PHE ARG LEU TRP VAL LEU SEQRES 17 A 516 ASN LYS TYR GLY SER LEU ASN GLU VAL ASN LYS ALA TRP SEQRES 18 A 516 GLY THR LYS LEU ILE SER GLU LEU ALA ILE LEU PRO PRO SEQRES 19 A 516 SER ASP GLY GLU GLN PHE LEU MET ASN GLY TYR LEU SER SEQRES 20 A 516 MET TYR GLY LYS ASP TYR LEU GLU TRP TYR GLN GLY ILE SEQRES 21 A 516 LEU GLU ASN HIS THR LYS LEU ILE GLY GLU LEU ALA HIS SEQRES 22 A 516 ASN ALA PHE ASP THR THR PHE GLN VAL PRO ILE GLY ALA SEQRES 23 A 516 LYS ILE ALA GLY VAL HIS TRP GLN TYR ASN ASN PRO THR SEQRES 24 A 516 ILE PRO HIS GLY ALA GLU LYS PRO ALA GLY TYR ASN ASP SEQRES 25 A 516 TYR SER HIS LEU LEU ASP ALA PHE LYS SER ALA LYS LEU SEQRES 26 A 516 ASP VAL THR PHE THR CYS LEU GLU MET THR ASP LYS GLY SEQRES 27 A 516 SER TYR PRO GLU TYR SER MET PRO LYS THR LEU VAL GLN SEQRES 28 A 516 ASN ILE ALA THR LEU ALA ASN GLU LYS GLY ILE VAL LEU SEQRES 29 A 516 ASN GLY GLU ASN ALA LEU SER ILE GLY ASN GLU GLU GLU SEQRES 30 A 516 TYR LYS ARG VAL ALA GLU MET ALA PHE ASN TYR ASN PHE SEQRES 31 A 516 ALA GLY PHE THR LEU LEU ARG TYR GLN ASP VAL MET TYR SEQRES 32 A 516 ASN ASN SER LEU MET GLY LYS PHE LYS ASP LEU LEU GLY SEQRES 33 A 516 VAL THR PRO VAL MET GLN THR ILE VAL VAL LYS ASN VAL SEQRES 34 A 516 PRO THR THR ILE GLY ASP THR VAL TYR ILE THR GLY ASN SEQRES 35 A 516 ARG ALA GLU LEU GLY SER TRP ASP THR LYS GLN TYR PRO SEQRES 36 A 516 ILE GLN LEU TYR TYR ASP SER HIS SER ASN ASP TRP ARG SEQRES 37 A 516 GLY ASN VAL VAL LEU PRO ALA GLU ARG ASN ILE GLU PHE SEQRES 38 A 516 LYS ALA PHE ILE LYS SER LYS ASP GLY THR VAL LYS SER SEQRES 39 A 516 TRP GLN THR ILE GLN GLN SER TRP ASN PRO VAL PRO LEU SEQRES 40 A 516 LYS THR THR SER HIS THR SER SER TRP HET ACT A 920 4 HET SO4 A 921 5 HET CA A 930 1 HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 SO4 O4 S 2- FORMUL 4 CA CA 2+ FORMUL 5 HOH *120(H2 O) HELIX 1 1 VAL A 2 GLY A 4 5 3 HELIX 2 2 ILE A 22 GLU A 24 5 3 HELIX 3 3 TRP A 28 ASN A 41 1 14 HELIX 4 4 TRP A 52 MET A 55 1 4 HELIX 5 5 SER A 66 ALA A 78 1 13 HELIX 6 6 VAL A 107 ASN A 109 5 3 HELIX 7 7 SER A 135 MET A 153 1 19 HELIX 8 8 LYS A 157 VAL A 159 5 3 HELIX 9 9 PRO A 169 GLY A 171 5 3 HELIX 10 10 GLU A 197 TYR A 211 1 15 HELIX 11 11 LEU A 214 TRP A 221 1 8 HELIX 12 12 GLU A 228 ALA A 230 5 3 HELIX 13 13 GLY A 237 MET A 242 1 6 HELIX 14 14 GLY A 244 LEU A 246 5 3 HELIX 15 15 MET A 248 PHE A 276 1 29 HELIX 16 16 GLU A 305 ALA A 308 1 4 HELIX 17 17 TYR A 313 ALA A 323 1 11 HELIX 18 18 PRO A 346 LYS A 360 1 15 HELIX 19 19 GLU A 375 ASN A 387 1 13 HELIX 20 20 TYR A 398 MET A 402 1 5 HELIX 21 21 ASN A 405 LEU A 414 1 10 HELIX 22 22 ALA A 444 LEU A 446 5 3 SHEET 1 A 9 LYS A 12 LEU A 15 0 SHEET 2 A 9 GLY A 392 LEU A 395 1 N PHE A 393 O LYS A 12 SHEET 3 A 9 LEU A 364 GLU A 367 1 N GLY A 366 O GLY A 392 SHEET 4 A 9 ASP A 326 PHE A 329 1 N VAL A 327 O ASN A 365 SHEET 5 A 9 ILE A 284 LYS A 287 1 N ALA A 286 O ASP A 326 SHEET 6 A 9 ILE A 160 LEU A 165 1 N ILE A 163 O GLY A 285 SHEET 7 A 9 LYS A 81 SER A 87 1 N MET A 82 O ALA A 161 SHEET 8 A 9 PHE A 43 TRP A 51 1 N ILE A 46 O LYS A 81 SHEET 9 A 9 ALA A 13 MET A 16 1 N ALA A 13 O TYR A 44 SHEET 1 B 4 SER A 511 SER A 515 0 SHEET 2 B 4 PRO A 419 LYS A 427 1 N THR A 423 O HIS A 512 SHEET 3 B 4 ASP A 466 PRO A 474 -1 N LEU A 473 O VAL A 420 SHEET 4 B 4 TYR A 459 ASP A 461 -1 N ASP A 461 O ASP A 466 SHEET 1 C 4 ILE A 456 LEU A 458 0 SHEET 2 C 4 THR A 436 GLY A 441 -1 N ILE A 439 O ILE A 456 SHEET 3 C 4 ILE A 479 LYS A 486 -1 N LYS A 486 O THR A 436 SHEET 4 C 4 GLN A 500 TRP A 502 -1 N TRP A 502 O ILE A 479 SHEET 1 D 2 PHE A 484 SER A 487 0 SHEET 2 D 2 THR A 491 TRP A 495 -1 N SER A 494 O ILE A 485 SSBOND 1 CYS A 91 CYS A 99 1555 1555 2.03 LINK OE2 GLU A 56 CA CA A 930 1555 1555 2.39 LINK OE1 GLU A 56 CA CA A 930 1555 1555 3.36 LINK OD1 ASP A 60 CA CA A 930 1555 1555 2.68 LINK OE1 GLU A 141 CA CA A 930 1555 1555 2.37 LINK OE1 GLU A 144 CA CA A 930 1555 1555 2.08 CISPEP 1 TYR A 186 PRO A 187 0 5.50 CISPEP 2 TYR A 340 PRO A 341 0 -0.54 CISPEP 3 LEU A 396 ARG A 397 0 -0.09 CISPEP 4 ASN A 503 PRO A 504 0 -9.21 SITE 1 C1 1 GLU A 172 SITE 1 C2 1 GLU A 367 SITE 1 AC1 6 ASN A 131 LEU A 133 TYR A 175 GLN A 193 SITE 2 AC1 6 ALA A 199 HOH A 617 SITE 1 AC2 3 ASN A 404 ASN A 405 SER A 406 SITE 1 AC3 5 GLU A 56 ASP A 60 LYS A 140 GLU A 141 SITE 2 AC3 5 GLU A 144 CRYST1 57.075 92.103 65.671 90.00 101.81 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017521 0.000000 0.003663 0.00000 SCALE2 0.000000 0.010857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015557 0.00000 TER 4120 TRP A 516 HETATM 4121 C ACT A 920 32.464 47.130 -3.338 1.00 26.90 C HETATM 4122 O ACT A 920 32.597 48.321 -3.630 1.00 23.82 O HETATM 4123 OXT ACT A 920 33.371 46.340 -3.612 1.00 29.13 O HETATM 4124 CH3 ACT A 920 31.191 46.643 -2.648 1.00 26.12 C HETATM 4125 S SO4 A 921 56.025 39.124 36.566 1.00 74.25 S HETATM 4126 O1 SO4 A 921 54.902 38.245 36.329 1.00 70.24 O HETATM 4127 O2 SO4 A 921 56.389 39.848 35.367 1.00 70.15 O HETATM 4128 O3 SO4 A 921 57.157 38.329 36.982 1.00 71.13 O HETATM 4129 O4 SO4 A 921 55.674 40.077 37.600 1.00 72.29 O HETATM 4130 CA CA A 930 53.625 45.596 -8.418 1.00 39.50 CA HETATM 4131 O HOH A 600 34.753 17.251 13.382 1.00 27.53 O HETATM 4132 O HOH A 601 28.427 12.546 21.967 1.00 49.50 O HETATM 4133 O HOH A 602 41.121 15.338 23.745 1.00 20.01 O HETATM 4134 O HOH A 603 53.228 46.526 19.141 1.00 19.37 O HETATM 4135 O HOH A 604 54.960 53.070 11.163 1.00 21.34 O HETATM 4136 O HOH A 605 56.218 44.373 10.336 1.00 28.44 O HETATM 4137 O HOH A 606 57.177 44.765 6.989 1.00 11.92 O HETATM 4138 O HOH A 607 57.613 43.089 12.780 1.00 8.52 O HETATM 4139 O HOH A 608 64.737 37.518 26.882 1.00 39.21 O HETATM 4140 O HOH A 609 56.135 21.295 18.718 1.00 44.50 O HETATM 4141 O HOH A 610 74.753 39.322 16.016 1.00 15.66 O HETATM 4142 O HOH A 611 47.605 39.523 0.787 1.00 9.05 O HETATM 4143 O HOH A 612 42.780 37.648 5.044 1.00 10.15 O HETATM 4144 O HOH A 613 42.888 42.112 -0.408 1.00 11.23 O HETATM 4145 O HOH A 614 43.533 48.042 7.290 1.00 2.42 O HETATM 4146 O HOH A 615 43.369 49.990 -17.010 1.00 22.91 O HETATM 4147 O HOH A 616 34.706 50.946 -6.623 1.00 13.51 O HETATM 4148 O HOH A 617 32.262 51.110 -2.890 1.00 10.35 O HETATM 4149 O HOH A 618 39.155 40.744 -6.375 1.00 10.91 O HETATM 4150 O HOH A 619 45.860 30.515 13.556 1.00 7.88 O HETATM 4151 O HOH A 620 29.548 46.318 10.470 1.00 22.59 O HETATM 4152 O HOH A 621 37.632 48.417 14.369 1.00 37.70 O HETATM 4153 O HOH A 622 34.694 44.300 22.003 1.00 29.69 O HETATM 4154 O HOH A 623 35.714 43.014 19.535 1.00 17.28 O HETATM 4155 O HOH A 624 23.155 51.484 15.658 1.00 39.62 O HETATM 4156 O HOH A 625 24.889 37.883 -12.609 1.00 31.28 O HETATM 4157 O HOH A 626 21.977 41.044 -19.878 1.00 16.50 O HETATM 4158 O HOH A 627 15.602 48.640 -6.489 1.00 18.59 O HETATM 4159 O HOH A 628 16.999 56.930 -13.333 1.00 37.88 O HETATM 4160 O HOH A 629 20.964 36.305 -0.565 1.00 44.27 O HETATM 4161 O HOH A 630 25.342 33.639 -8.404 1.00 37.98 O HETATM 4162 O HOH A 631 35.670 39.953 -6.492 1.00 30.46 O HETATM 4163 O HOH A 632 43.631 27.759 -5.541 1.00 27.03 O HETATM 4164 O HOH A 633 45.927 25.312 2.442 1.00 31.15 O HETATM 4165 O HOH A 634 41.794 24.019 4.887 1.00 10.51 O HETATM 4166 O HOH A 635 31.899 37.500 11.700 1.00 12.00 O HETATM 4167 O HOH A 636 26.045 41.532 13.193 1.00 7.15 O HETATM 4168 O HOH A 637 19.079 37.493 9.055 1.00 23.75 O HETATM 4169 O HOH A 638 24.997 37.029 9.327 1.00 13.58 O HETATM 4170 O HOH A 639 39.815 21.690 -2.218 1.00 38.66 O HETATM 4171 O HOH A 641 33.762 42.485 24.437 1.00 41.92 O HETATM 4172 O HOH A 642 43.311 23.629 29.058 1.00 21.21 O HETATM 4173 O HOH A 643 36.525 -6.264 31.975 1.00 23.31 O HETATM 4174 O HOH A 644 31.791 16.001 38.467 1.00 50.27 O HETATM 4175 O HOH A 645 32.524 -1.767 19.204 1.00 37.35 O HETATM 4176 O HOH A 646 51.771 14.580 40.686 1.00 41.04 O HETATM 4177 O HOH A 647 20.572 10.560 35.561 1.00 43.45 O HETATM 4178 O HOH A 648 36.620 2.950 40.059 1.00 8.49 O HETATM 4179 O HOH A 649 47.122 5.114 37.063 1.00 39.50 O HETATM 4180 O HOH A 651 27.982 22.930 19.322 1.00 20.51 O HETATM 4181 O HOH A 652 53.281 41.985 12.959 1.00 17.28 O HETATM 4182 O HOH A 653 68.643 46.152 16.483 1.00 37.17 O HETATM 4183 O HOH A 654 71.349 44.110 25.042 1.00 45.51 O HETATM 4184 O HOH A 655 68.092 45.650 11.957 1.00 22.50 O HETATM 4185 O HOH A 656 52.924 24.027 20.170 1.00 29.82 O HETATM 4186 O HOH A 657 50.715 48.427 3.668 1.00 7.49 O HETATM 4187 O HOH A 658 44.999 45.858 -0.741 1.00 19.17 O HETATM 4188 O HOH A 659 45.463 47.017 11.400 1.00 25.86 O HETATM 4189 O HOH A 660 42.433 49.336 10.999 1.00 35.87 O HETATM 4190 O HOH A 661 38.372 43.329 0.902 1.00 10.94 O HETATM 4191 O HOH A 662 33.867 54.098 4.167 1.00 18.48 O HETATM 4192 O HOH A 664 44.807 43.649 1.702 1.00 18.82 O HETATM 4193 O HOH A 665 36.164 48.267 9.030 1.00 12.09 O HETATM 4194 O HOH A 666 39.351 53.715 11.892 1.00 48.13 O HETATM 4195 O HOH A 667 28.676 42.989 -12.933 1.00 21.57 O HETATM 4196 O HOH A 668 12.457 46.401 -2.397 1.00 52.89 O HETATM 4197 O HOH A 669 37.589 34.838 -8.888 1.00 21.83 O HETATM 4198 O HOH A 670 40.939 22.032 11.978 1.00 12.86 O HETATM 4199 O HOH A 671 47.022 38.577 25.249 1.00 15.35 O HETATM 4200 O HOH A 672 51.385 23.542 35.625 1.00 45.90 O HETATM 4201 O HOH A 673 38.084 25.745 30.314 1.00 33.30 O HETATM 4202 O HOH A 674 45.515 20.494 10.566 1.00 41.51 O HETATM 4203 O HOH A 675 39.911 15.846 12.619 1.00 37.51 O HETATM 4204 O HOH A 676 57.200 35.163 30.028 1.00 12.39 O HETATM 4205 O HOH A 677 61.472 37.958 33.725 1.00 19.91 O HETATM 4206 O HOH A 678 22.580 15.941 33.014 1.00 47.52 O HETATM 4207 O HOH A 679 27.113 19.758 18.123 1.00 39.39 O HETATM 4208 O HOH A 680 35.526 -15.219 27.943 1.00 56.71 O HETATM 4209 O HOH A 681 52.760 2.131 33.448 1.00 55.51 O HETATM 4210 O HOH A 682 41.431 4.051 32.106 1.00 6.10 O HETATM 4211 O HOH A 683 28.628 12.239 15.659 1.00 39.61 O HETATM 4212 O HOH A 684 51.321 17.886 9.053 1.00 65.83 O HETATM 4213 O HOH A 685 58.306 47.865 25.118 1.00 32.87 O HETATM 4214 O HOH A 686 61.549 38.233 27.875 1.00 19.77 O HETATM 4215 O HOH A 687 72.402 29.431 16.364 1.00 44.33 O HETATM 4216 O HOH A 688 22.436 55.085 10.688 1.00 33.04 O HETATM 4217 O HOH A 689 29.612 61.687 -3.402 1.00 56.82 O HETATM 4218 O HOH A 690 52.866 40.830 -14.153 1.00 45.52 O HETATM 4219 O HOH A 692 29.769 48.104 12.905 1.00 21.90 O HETATM 4220 O HOH A 693 13.293 48.877 -4.604 1.00 26.47 O HETATM 4221 O HOH A 694 20.060 38.827 4.975 1.00 18.53 O HETATM 4222 O HOH A 696 25.423 33.618 12.384 1.00 28.65 O HETATM 4223 O HOH A 697 19.550 35.732 6.674 1.00 30.09 O HETATM 4224 O HOH A 698 40.425 25.034 2.535 1.00 22.25 O HETATM 4225 O HOH A 699 31.158 33.186 31.646 1.00 45.24 O HETATM 4226 O HOH A 700 42.824 42.256 33.036 1.00 38.77 O HETATM 4227 O HOH A 701 55.008 45.783 27.412 1.00 31.26 O HETATM 4228 O HOH A 703 42.375 -11.130 19.495 1.00 61.29 O HETATM 4229 O HOH A 704 28.378 3.633 18.508 1.00 49.17 O HETATM 4230 O HOH A 705 53.748 16.729 37.302 1.00 28.83 O HETATM 4231 O HOH A 706 53.038 9.543 34.687 1.00 35.76 O HETATM 4232 O HOH A 707 31.680 21.382 15.056 1.00 30.16 O HETATM 4233 O HOH A 708 51.344 21.649 20.266 1.00 34.18 O HETATM 4234 O HOH A 709 48.536 44.230 22.161 1.00 36.29 O HETATM 4235 O HOH A 710 46.302 37.111 11.828 1.00 45.49 O HETATM 4236 O HOH A 711 61.625 42.410 23.697 1.00 24.61 O HETATM 4237 O HOH A 712 57.539 24.848 20.653 1.00 29.61 O HETATM 4238 O HOH A 713 59.367 51.690 -10.836 1.00 44.91 O HETATM 4239 O HOH A 714 60.753 44.129 4.144 1.00 26.12 O HETATM 4240 O HOH A 715 46.420 52.793 2.569 1.00 24.87 O HETATM 4241 O HOH A 716 22.334 55.638 4.843 1.00 39.05 O HETATM 4242 O HOH A 719 13.620 46.660 -21.089 1.00 30.84 O HETATM 4243 O HOH A 721 19.666 35.727 -5.192 1.00 29.42 O HETATM 4244 O HOH A 722 28.938 38.633 -6.753 1.00 37.09 O HETATM 4245 O HOH A 723 49.674 25.173 -7.631 1.00 46.82 O HETATM 4246 O HOH A 724 19.697 37.358 14.880 1.00 24.04 O HETATM 4247 O HOH A 725 47.852 37.217 27.445 1.00 21.72 O HETATM 4248 O HOH A 726 52.213 43.576 29.528 1.00 55.67 O HETATM 4249 O HOH A 729 46.088 6.788 39.353 1.00 49.06 O HETATM 4250 O HOH A 730 56.563 7.596 28.687 1.00 53.59 O CONECT 465 4130 CONECT 466 4130 CONECT 494 4130 CONECT 744 793 CONECT 793 744 CONECT 1131 4130 CONECT 1156 4130 CONECT 4121 4122 4123 4124 CONECT 4122 4121 CONECT 4123 4121 CONECT 4124 4121 CONECT 4125 4126 4127 4128 4129 CONECT 4126 4125 CONECT 4127 4125 CONECT 4128 4125 CONECT 4129 4125 CONECT 4130 465 466 494 1131 CONECT 4130 1156 MASTER 356 0 3 22 19 0 7 6 4249 1 18 40 END