HEADER IMMUNOGLOBULIN 05-MAY-92 1BBD TITLE THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING TITLE 2 ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR J.TORMO,D.BLAAS,I.FITA REVDAT 7 23-OCT-24 1BBD 1 REMARK REVDAT 6 05-JUN-24 1BBD 1 REMARK SEQADV REVDAT 5 05-FEB-14 1BBD 1 SOURCE VERSN REVDAT 4 25-AUG-09 1BBD 1 SOURCE REVDAT 3 24-FEB-09 1BBD 1 VERSN REVDAT 2 01-APR-03 1BBD 1 JRNL REVDAT 1 31-JAN-94 1BBD 0 JRNL AUTH J.TORMO,E.STADLER,T.SKERN,H.AUER,O.KANZLER,C.BETZEL,D.BLAAS, JRNL AUTH 2 I.FITA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A JRNL TITL 2 NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2. JRNL REF PROTEIN SCI. V. 1 1154 1992 JRNL REFN ISSN 0961-8368 JRNL PMID 1338980 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.TORMO,I.FITA,O.KANZLER,D.BLAAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 THE FAB FRAGMENT OF A NEUTRALIZING MONOCLONAL ANTIBODY REMARK 1 TITL 3 DIRECTED AGAINST HUMAN RHINOVIRUS SEROTYPE 2 REMARK 1 REF J.BIOL.CHEM. V. 265 16799 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3332 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.022 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.053 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.069 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.018 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.225 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.245 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.293 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.299 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.100 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 24.400; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 220 REMARK 465 GLY H 134 REMARK 465 ASP H 135 REMARK 465 THR H 136 REMARK 465 THR H 137 REMARK 465 GLY H 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG H 13 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP L 190 N TYR L 192 2.08 REMARK 500 OH TYR H 99 OD1 ASP H 104 2.12 REMARK 500 OG SER L 25 O GLN L 27 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY H 8 N GLY H 8 CA 0.124 REMARK 500 SER H 88 CB SER H 88 OG 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU L 11 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG L 33 CD - NE - CZ ANGL. DEV. = 30.6 DEGREES REMARK 500 ARG L 33 NH1 - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG L 33 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 LYS L 51 CA - CB - CG ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG L 60 NE - CZ - NH1 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG L 60 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ASP L 88 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP L 88 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASN L 99 OD1 - CG - ND2 ANGL. DEV. = 14.9 DEGREES REMARK 500 TYR L 100 CB - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR L 100 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG L 114 CD - NE - CZ ANGL. DEV. = 36.4 DEGREES REMARK 500 ARG L 114 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 SER L 122 CB - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 GLU L 129 CA - CB - CG ANGL. DEV. = 26.1 DEGREES REMARK 500 ASP L 157 CB - CG - OD1 ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP L 157 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG L 161 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 GLN L 172 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP L 173 CB - CG - OD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP L 190 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG L 194 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 HIS L 195 CA - CB - CG ANGL. DEV. = -11.1 DEGREES REMARK 500 SER L 197 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG L 217 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG L 217 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLU L 219 CA - CB - CG ANGL. DEV. = 25.9 DEGREES REMARK 500 VAL H 2 CB - CA - C ANGL. DEV. = 14.2 DEGREES REMARK 500 VAL H 2 CA - CB - CG1 ANGL. DEV. = 11.5 DEGREES REMARK 500 SER H 7 CA - C - N ANGL. DEV. = 19.0 DEGREES REMARK 500 GLU H 10 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 GLU H 10 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG H 13 O - C - N ANGL. DEV. = 11.7 DEGREES REMARK 500 GLU H 46 OE1 - CD - OE2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG H 50 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 THR H 58 CA - CB - CG2 ANGL. DEV. = 10.6 DEGREES REMARK 500 LYS H 59 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 THR H 87 C - N - CA ANGL. DEV. = 25.9 DEGREES REMARK 500 THR H 87 CA - CB - CG2 ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR H 94 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP H 97 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR H 99 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 MET H 105 N - CA - CB ANGL. DEV. = -15.3 DEGREES REMARK 500 TYR H 107 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 THR H 112 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 SER H 117 N - CA - CB ANGL. DEV. = -10.0 DEGREES REMARK 500 SER H 125 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 TYR H 127 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 TYR H 127 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 63 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 7 144.79 -173.10 REMARK 500 GLU L 17 -170.02 -41.63 REMARK 500 ARG L 33 -89.00 -33.06 REMARK 500 ALA L 57 -23.66 59.10 REMARK 500 SER L 58 -6.85 -156.80 REMARK 500 SER L 62 123.71 -39.59 REMARK 500 ALA L 90 -176.99 177.23 REMARK 500 TYR L 98 -85.62 -66.40 REMARK 500 PRO L 126 -171.22 -53.36 REMARK 500 ASN L 144 54.15 70.19 REMARK 500 TYR L 146 119.61 168.95 REMARK 500 ASP L 190 -97.72 -71.54 REMARK 500 GLU L 191 -52.91 -11.54 REMARK 500 TYR L 192 -70.65 -48.03 REMARK 500 ASN L 196 -28.21 -143.34 REMARK 500 LYS L 205 -37.16 -26.04 REMARK 500 ALA H 9 150.95 -38.15 REMARK 500 PHE H 27 -179.36 -174.37 REMARK 500 GLU H 42 -11.20 70.96 REMARK 500 SER H 163 -74.08 -53.13 REMARK 500 SER H 165 -6.12 -148.95 REMARK 500 GLN H 176 92.85 176.28 REMARK 500 SER H 177 -4.74 111.16 REMARK 500 SER H 190 -6.91 -57.13 REMARK 500 PRO H 194 51.95 -94.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: L1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: L2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: L3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: H1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: H2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: H3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 720 DBREF 1BBD L 1 220 GB 208622 AAA72671 2 221 DBREF 1BBD H 1 218 GB 2072133 AAB53774 1 213 SEQADV 1BBD THR L 12 GB 208622 SER 13 CONFLICT SEQADV 1BBD THR L 14 GB 208622 SER 15 CONFLICT SEQADV 1BBD THR L 15 GB 208622 ALA 16 CONFLICT SEQADV 1BBD LYS L 18 GB 208622 ARG 19 CONFLICT SEQADV 1BBD THR L 22 GB 208622 SER 23 CONFLICT SEQADV 1BBD ARG L 33 GB 208622 GLY 34 CONFLICT SEQADV 1BBD THR L 34 GB 208622 ASN 35 CONFLICT SEQADV 1BBD TYR L 38 GB 208622 PHE 39 CONFLICT SEQADV 1BBD THR L 40 GB 208622 ALA 41 CONFLICT SEQADV 1BBD SER L 49 GB 208622 PRO 50 CONFLICT SEQADV 1BBD TRP L 56 GB 208622 GLY 57 CONFLICT SEQADV 1BBD SER L 80 GB 208622 THR 81 CONFLICT SEQADV 1BBD GLY L 83 GB 208622 SER 84 CONFLICT SEQADV 1BBD ASN L 97 GB 208622 ASP 98 CONFLICT SEQADV 1BBD TYR L 98 GB 208622 HIS 99 CONFLICT SEQADV 1BBD ASN L 99 GB 208622 SER 100 CONFLICT SEQADV 1BBD ARG H 13 GB 2072133 LYS 13 CONFLICT SEQADV 1BBD ALA H 16 GB 2072133 THR 16 CONFLICT SEQADV 1BBD THR H 24 GB 2072133 ALA 24 CONFLICT SEQADV 1BBD ILE H 32 GB 2072133 THR 32 CONFLICT SEQADV 1BBD HIS H 35 GB 2072133 TYR 35 CONFLICT SEQADV 1BBD LEU H 51 GB 2072133 ILE 51 CONFLICT SEQADV 1BBD TYR H 57 GB 2072133 ASN 57 CONFLICT SEQADV 1BBD LYS H 59 GB 2072133 GLU 59 CONFLICT SEQADV 1BBD TYR H 60 GB 2072133 PHE 60 CONFLICT SEQADV 1BBD LYS H 63 GB 2072133 ARG 63 CONFLICT SEQADV 1BBD GLN H 65 GB 2072133 LEU 65 CONFLICT SEQADV 1BBD VAL H 72 GB 2072133 ALA 72 CONFLICT SEQADV 1BBD HIS H 82 GB 2072133 GLN 82 CONFLICT SEQADV 1BBD LEU H 83 GB 2072133 VAL 83 CONFLICT SEQADV 1BBD ASP H 97 GB 2072133 INSERTION SEQADV 1BBD GLY H 98 GB 2072133 INSERTION SEQADV 1BBD TYR H 99 GB 2072133 INSERTION SEQADV 1BBD TYR H 100 GB 2072133 INSERTION SEQADV 1BBD SER H 101 GB 2072133 INSERTION SEQADV 1BBD TYR H 102 GB 2072133 HIS 97 CONFLICT SEQADV 1BBD TYR H 103 GB 2072133 LEU 98 CONFLICT SEQADV 1BBD ASP H 104 GB 2072133 HIS 99 CONFLICT SEQADV 1BBD MET H 105 GB 2072133 GLY 100 CONFLICT SEQADV 1BBD ASP H 106 GB 2072133 PRO 101 CONFLICT SEQADV 1BBD PRO H 110 GB 2072133 GLN 105 CONFLICT SEQADV 1BBD SER H 113 GB 2072133 LEU 108 CONFLICT SEQADV 1BBD SER H 118 GB 2072133 ALA 113 CONFLICT SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO SER SER LEU THR VAL SEQRES 2 L 220 THR THR GLY GLU LYS VAL THR MET THR CYS LYS SER SER SEQRES 3 L 220 GLN SER LEU LEU ASN SER ARG THR GLN LYS ASN TYR LEU SEQRES 4 L 220 THR TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU SER ILE SER GLY VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN ASN ASN TYR ASN TYR PRO LEU THR PHE SEQRES 9 L 220 GLY ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA SEQRES 10 L 220 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 L 220 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 L 220 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 L 220 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 L 220 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 L 220 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 L 220 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 218 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 H 218 PRO GLY ALA SER VAL LYS LEU SER CYS THR THR SER GLY SEQRES 3 H 218 PHE ASN ILE LYS ASP ILE TYR ILE HIS TRP VAL LYS GLN SEQRES 4 H 218 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG LEU ASP SEQRES 5 H 218 PRO ALA ASN GLY TYR THR LYS TYR ASP PRO LYS PHE GLN SEQRES 6 H 218 GLY LYS ALA THR ILE THR VAL ASP THR SER SER ASN THR SEQRES 7 H 218 ALA TYR LEU HIS LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 218 ALA VAL TYR TYR CYS ASP GLY TYR TYR SER TYR TYR ASP SEQRES 9 H 218 MET ASP TYR TRP GLY PRO GLY THR SER VAL THR VAL SER SEQRES 10 H 218 SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 218 PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU SEQRES 12 H 218 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 218 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 218 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 218 SER SER SER VAL THR VAL THR SER SER THR TRP PRO SER SEQRES 16 H 218 GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 218 THR LYS VAL ASP LYS LYS ILE GLU PRO ARG HET SO4 H 720 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *5(H2 O) HELIX 1 A1 SER L 128 SER L 133 1 6 HELIX 2 A2 LYS L 189 ARG L 194 1 6 HELIX 3 A3 SER H 190 THR H 192 1 3 SHEET 1 A 4 THR L 5 SER L 7 0 SHEET 2 A 4 LYS L 18 LYS L 24 -1 N THR L 22 O SER L 7 SHEET 3 A 4 ASP L 76 SER L 82 -1 N PHE L 77 O CYS L 23 SHEET 4 A 4 THR L 69 SER L 73 -1 O THR L 69 N SER L 80 SHEET 1 B 6 SER L 10 THR L 14 0 SHEET 2 B 6 THR L 108 LYS L 113 1 O LYS L 109 N LEU L 11 SHEET 3 B 6 ALA L 90 ASN L 96 -1 O ALA L 90 N LEU L 110 SHEET 4 B 6 LEU L 39 GLN L 44 -1 O THR L 40 N GLN L 95 SHEET 5 B 6 LYS L 51 TYR L 55 -1 O LYS L 51 N GLN L 43 SHEET 6 B 6 THR L 59 ARG L 60 -1 N THR L 59 O TYR L 55 SHEET 1 C 2 LEU L 30 ASN L 31 0 SHEET 2 C 2 LYS L 36 ASN L 37 -1 O LYS L 36 N ASN L 31 SHEET 1 D 4 THR L 120 PHE L 124 0 SHEET 2 D 4 GLY L 135 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 D 4 TYR L 179 THR L 188 -1 N TYR L 179 O PHE L 145 SHEET 4 D 4 VAL L 165 LEU L 166 -1 N LEU L 166 O THR L 184 SHEET 1 E 4 SER L 159 ARG L 161 0 SHEET 2 E 4 ASN L 151 ILE L 156 -1 O TRP L 154 N ARG L 161 SHEET 3 E 4 SER L 197 THR L 203 -1 N THR L 199 O LYS L 155 SHEET 4 E 4 ILE L 211 ASN L 216 -1 N ILE L 211 O ALA L 202 SHEET 1 F 4 GLN H 3 GLN H 6 0 SHEET 2 F 4 VAL H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 F 4 THR H 78 LEU H 83 -1 N ALA H 79 O CYS H 22 SHEET 4 F 4 ALA H 68 ASP H 73 -1 O THR H 69 N HIS H 82 SHEET 1 G 5 TYR H 57 TYR H 60 0 SHEET 2 G 5 LEU H 45 ASP H 52 -1 N ARG H 50 O LYS H 59 SHEET 3 G 5 TYR H 33 GLN H 39 -1 O ILE H 34 N LEU H 51 SHEET 4 G 5 ALA H 92 TYR H 99 -1 N VAL H 93 O GLN H 39 SHEET 5 G 5 ASP H 106 TRP H 108 -1 N TYR H 107 O GLY H 98 SHEET 1 H 6 TYR H 57 TYR H 60 0 SHEET 2 H 6 LEU H 45 ASP H 52 -1 N ARG H 50 O LYS H 59 SHEET 3 H 6 TYR H 33 GLN H 39 -1 O ILE H 34 N LEU H 51 SHEET 4 H 6 ALA H 92 TYR H 99 -1 N VAL H 93 O GLN H 39 SHEET 5 H 6 THR H 112 VAL H 116 -1 O THR H 112 N TYR H 94 SHEET 6 H 6 GLU H 10 VAL H 12 1 O GLU H 10 N THR H 115 SHEET 1 I 4 SER H 125 LEU H 129 0 SHEET 2 I 4 SER H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 I 4 TYR H 180 THR H 189 -1 N TYR H 180 O TYR H 150 SHEET 4 I 4 VAL H 168 THR H 170 -1 N HIS H 169 O SER H 185 SHEET 1 J 4 SER H 125 LEU H 129 0 SHEET 2 J 4 SER H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 J 4 TYR H 180 THR H 189 -1 N TYR H 180 O TYR H 150 SHEET 4 J 4 VAL H 174 LEU H 175 -1 N VAL H 174 O THR H 181 SHEET 1 K 3 THR H 156 TRP H 159 0 SHEET 2 K 3 THR H 199 HIS H 204 -1 N ASN H 201 O THR H 158 SHEET 3 K 3 THR H 209 LYS H 214 -1 O THR H 209 N HIS H 204 SSBOND 1 CYS L 23 CYS L 94 1555 1555 1.94 SSBOND 2 CYS L 140 CYS L 200 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.10 SSBOND 4 CYS H 145 CYS H 200 1555 1555 2.11 CISPEP 1 SER L 7 PRO L 8 0 -0.04 CISPEP 2 TYR L 100 PRO L 101 0 -1.08 CISPEP 3 TYR L 146 PRO L 147 0 5.05 CISPEP 4 PHE H 151 PRO H 152 0 2.15 CISPEP 5 GLU H 153 PRO H 154 0 -3.30 CISPEP 6 TRP H 193 PRO H 194 0 -0.02 SITE 1 L1 17 LYS L 24 SER L 25 SER L 26 GLN L 27 SITE 2 L1 17 SER L 28 LEU L 29 LEU L 30 ASN L 31 SITE 3 L1 17 SER L 32 ARG L 33 THR L 34 GLN L 35 SITE 4 L1 17 LYS L 36 ASN L 37 TYR L 38 LEU L 39 SITE 5 L1 17 THR L 40 SITE 1 L2 13 PRO L 50 LYS L 51 LEU L 52 LEU L 53 SITE 2 L2 13 ILE L 54 TYR L 55 TRP L 56 ALA L 57 SITE 3 L2 13 SER L 58 THR L 59 ARG L 60 GLU L 61 SITE 4 L2 13 SER L 62 SITE 1 L3 15 LEU L 89 ALA L 90 VAL L 91 TYR L 92 SITE 2 L3 15 TYR L 93 CYS L 94 GLN L 95 ASN L 96 SITE 3 L3 15 ASN L 97 TYR L 98 ASN L 99 TYR L 100 SITE 4 L3 15 PRO L 101 LEU L 102 THR L 103 SITE 1 H1 5 ASP H 31 ILE H 32 TYR H 33 ILE H 34 SITE 2 H1 5 HIS H 35 SITE 1 H2 17 ARG H 50 LEU H 51 ASP H 52 PRO H 53 SITE 2 H2 17 ALA H 54 ASN H 55 GLY H 56 TYR H 57 SITE 3 H2 17 THR H 58 LYS H 59 TYR H 60 ASP H 61 SITE 4 H2 17 PRO H 62 LYS H 63 PHE H 64 GLN H 65 SITE 5 H2 17 GLY H 66 SITE 1 H3 9 TYR H 99 TYR H 100 SER H 101 TYR H 102 SITE 2 H3 9 TYR H 103 ASP H 104 MET H 105 ASP H 106 SITE 3 H3 9 TYR H 107 SITE 1 AC1 4 TYR H 33 HIS H 35 ARG H 50 HOH H 721 CRYST1 59.700 86.800 128.000 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007813 0.00000