data_1BBX # _entry.id 1BBX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BBX pdb_00001bbx 10.2210/pdb1bbx/pdb WWPDB D_1000171570 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BBX _pdbx_database_status.recvd_initial_deposition_date 1998-04-24 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Agback, P.' 1 'Baumann, H.' 2 'Knapp, S.' 3 'Ladenstein, R.' 4 'Hard, T.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Architecture of Nonspecific Protein-DNA Interactions in the Sso7D-DNA Complex' Nat.Struct.Biol. 5 579 584 1998 NSBIEW US 1072-8368 2024 ? 9665172 10.1038/836 1 'DNA-Binding Surface of the Sso7D Protein from Sulfolobus Solfataricus' J.Mol.Biol. 247 840 ? 1995 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Solution Structure and DNA-Binding Properties of a Thermostable Protein from the Archaeon Sulfolobus Solfataricus' Nat.Struct.Biol. 1 808 ? 1994 NSBIEW US 1072-8368 2024 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Agback, P.' 1 ? primary 'Baumann, H.' 2 ? primary 'Knapp, S.' 3 ? primary 'Ladenstein, R.' 4 ? primary 'Hard, T.' 5 ? 1 'Baumann, H.' 6 ? 1 'Knapp, S.' 7 ? 1 'Karshikoff, A.' 8 ? 1 'Ladenstein, R.' 9 ? 1 'Hard, T.' 10 ? 2 'Baumann, H.' 11 ? 2 'Knapp, S.' 12 ? 2 'Lundback, T.' 13 ? 2 'Ladenstein, R.' 14 ? 2 'Hard, T.' 15 ? # _cell.entry_id 1BBX _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BBX _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*AP*GP*CP*GP*CP*GP*CP*TP*AP*G)-3') ; 3663.392 2 ? ? ? ? 2 polymer man 'DNA-BINDING PROTEIN 7D' 7163.403 2 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name SSO7D # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DG)(DC)(DG)(DC)(DG)(DC)(DT)(DA)(DG)' CTAGCGCGCTAG A,B ? 2 'polypeptide(L)' no no ATVKFKYKGEEKQVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKK ATVKFKYKGEEKQVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKK C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DA n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DT n 1 11 DA n 1 12 DG n 2 1 ALA n 2 2 THR n 2 3 VAL n 2 4 LYS n 2 5 PHE n 2 6 LYS n 2 7 TYR n 2 8 LYS n 2 9 GLY n 2 10 GLU n 2 11 GLU n 2 12 LYS n 2 13 GLN n 2 14 VAL n 2 15 ASP n 2 16 ILE n 2 17 SER n 2 18 LYS n 2 19 ILE n 2 20 LYS n 2 21 LYS n 2 22 VAL n 2 23 TRP n 2 24 ARG n 2 25 VAL n 2 26 GLY n 2 27 LYS n 2 28 MET n 2 29 ILE n 2 30 SER n 2 31 PHE n 2 32 THR n 2 33 TYR n 2 34 ASP n 2 35 GLU n 2 36 GLY n 2 37 GLY n 2 38 GLY n 2 39 LYS n 2 40 THR n 2 41 GLY n 2 42 ARG n 2 43 GLY n 2 44 ALA n 2 45 VAL n 2 46 SER n 2 47 GLU n 2 48 LYS n 2 49 ASP n 2 50 ALA n 2 51 PRO n 2 52 LYS n 2 53 GLU n 2 54 LEU n 2 55 LEU n 2 56 GLN n 2 57 MET n 2 58 LEU n 2 59 GLU n 2 60 LYS n 2 61 GLN n 2 62 LYS n 2 63 LYS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc 'DSM 1616' _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP DN72_SULSO 2 ? ? P39476 ? 2 PDB 1BBX 1 ? ? 1BBX ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BBX C 1 ? 63 ? P39476 1 ? 63 ? 1 63 2 1 1BBX D 1 ? 63 ? P39476 1 ? 63 ? 1 63 3 2 1BBX A 1 ? 12 ? 1BBX 1 ? 12 ? 1 12 4 2 1BBX B 1 ? 12 ? 1BBX 13 ? 24 ? 13 24 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1BBX GLN C 13 ? UNP P39476 GLU 13 conflict 13 1 2 1BBX GLN D 13 ? UNP P39476 GLU 13 conflict 13 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 HNCO 1 2 1 'CBCA(CO)NNH' 1 3 1 HNCACB 1 4 1 HCCH-TOCSY 1 5 1 HCC-TOCSY 1 6 1 13C 1 7 1 '15N DOUBLE HALF-FILTERED 2D NOESY' 1 8 1 '2D NOESY' 1 9 1 '15N-EDITED 3D NOE-HSQC' 1 10 1 '13C-EDITED 3D NOE-HSQC' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 323 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '60 mM' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'H2O:D2O 9:1' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITY _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1BBX _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1BBX _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELLED SSO7D AND NON-LABELLED DNA' # _pdbx_nmr_ensemble.entry_id 1BBX _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST RESTRAINT ENERGY' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' VNMR ? ? 2 'structure solution' ANSIG ? ? 3 'structure solution' XPLOR ? ? 4 # _exptl.entry_id 1BBX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1BBX _struct.title 'NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BBX _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'PROTEIN-DNA INTERACTION, NONSPECIFIC PROTEIN-DNA INTERACTION, COMPLEX (DNA-BINDING PROTEIN-DNA), DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE C 16 ? LYS C 18 ? ILE C 16 LYS C 18 5 ? 3 HELX_P HELX_P2 2 LEU C 55 ? LYS C 60 ? LEU C 55 LYS C 60 1 ? 6 HELX_P HELX_P3 3 ILE D 16 ? LYS D 18 ? ILE D 16 LYS D 18 5 ? 3 HELX_P HELX_P4 4 LEU D 55 ? LYS D 60 ? LEU D 55 LYS D 60 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 2 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 2 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 3 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 3 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 11 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 11 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 3 ? TYR C 7 ? VAL C 3 TYR C 7 A 2 GLU C 10 ? VAL C 14 ? GLU C 10 VAL C 14 B 1 VAL D 3 ? TYR D 7 ? VAL D 3 TYR D 7 B 2 GLU D 10 ? VAL D 14 ? GLU D 10 VAL D 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL C 3 ? O VAL C 3 N VAL C 14 ? N VAL C 14 B 1 2 O VAL D 3 ? O VAL D 3 N VAL D 14 ? N VAL D 14 # _database_PDB_matrix.entry_id 1BBX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BBX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DA 11 11 11 DA A A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DT 2 14 14 DT T B . n B 1 3 DA 3 15 15 DA A B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DC 5 17 17 DC C B . n B 1 6 DG 6 18 18 DG G B . n B 1 7 DC 7 19 19 DC C B . n B 1 8 DG 8 20 20 DG G B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DT 10 22 22 DT T B . n B 1 11 DA 11 23 23 DA A B . n B 1 12 DG 12 24 24 DG G B . n C 2 1 ALA 1 1 1 ALA ALA C . n C 2 2 THR 2 2 2 THR THR C . n C 2 3 VAL 3 3 3 VAL VAL C . n C 2 4 LYS 4 4 4 LYS LYS C . n C 2 5 PHE 5 5 5 PHE PHE C . n C 2 6 LYS 6 6 6 LYS LYS C . n C 2 7 TYR 7 7 7 TYR TYR C . n C 2 8 LYS 8 8 8 LYS LYS C . n C 2 9 GLY 9 9 9 GLY GLY C . n C 2 10 GLU 10 10 10 GLU GLU C . n C 2 11 GLU 11 11 11 GLU GLU C . n C 2 12 LYS 12 12 12 LYS LYS C . n C 2 13 GLN 13 13 13 GLN GLN C . n C 2 14 VAL 14 14 14 VAL VAL C . n C 2 15 ASP 15 15 15 ASP ASP C . n C 2 16 ILE 16 16 16 ILE ILE C . n C 2 17 SER 17 17 17 SER SER C . n C 2 18 LYS 18 18 18 LYS LYS C . n C 2 19 ILE 19 19 19 ILE ILE C . n C 2 20 LYS 20 20 20 LYS LYS C . n C 2 21 LYS 21 21 21 LYS LYS C . n C 2 22 VAL 22 22 22 VAL VAL C . n C 2 23 TRP 23 23 23 TRP TRP C . n C 2 24 ARG 24 24 24 ARG ARG C . n C 2 25 VAL 25 25 25 VAL VAL C . n C 2 26 GLY 26 26 26 GLY GLY C . n C 2 27 LYS 27 27 27 LYS LYS C . n C 2 28 MET 28 28 28 MET MET C . n C 2 29 ILE 29 29 29 ILE ILE C . n C 2 30 SER 30 30 30 SER SER C . n C 2 31 PHE 31 31 31 PHE PHE C . n C 2 32 THR 32 32 32 THR THR C . n C 2 33 TYR 33 33 33 TYR TYR C . n C 2 34 ASP 34 34 34 ASP ASP C . n C 2 35 GLU 35 35 35 GLU GLU C . n C 2 36 GLY 36 36 36 GLY GLY C . n C 2 37 GLY 37 37 37 GLY GLY C . n C 2 38 GLY 38 38 38 GLY GLY C . n C 2 39 LYS 39 39 39 LYS LYS C . n C 2 40 THR 40 40 40 THR THR C . n C 2 41 GLY 41 41 41 GLY GLY C . n C 2 42 ARG 42 42 42 ARG ARG C . n C 2 43 GLY 43 43 43 GLY GLY C . n C 2 44 ALA 44 44 44 ALA ALA C . n C 2 45 VAL 45 45 45 VAL VAL C . n C 2 46 SER 46 46 46 SER SER C . n C 2 47 GLU 47 47 47 GLU GLU C . n C 2 48 LYS 48 48 48 LYS LYS C . n C 2 49 ASP 49 49 49 ASP ASP C . n C 2 50 ALA 50 50 50 ALA ALA C . n C 2 51 PRO 51 51 51 PRO PRO C . n C 2 52 LYS 52 52 52 LYS LYS C . n C 2 53 GLU 53 53 53 GLU GLU C . n C 2 54 LEU 54 54 54 LEU LEU C . n C 2 55 LEU 55 55 55 LEU LEU C . n C 2 56 GLN 56 56 56 GLN GLN C . n C 2 57 MET 57 57 57 MET MET C . n C 2 58 LEU 58 58 58 LEU LEU C . n C 2 59 GLU 59 59 59 GLU GLU C . n C 2 60 LYS 60 60 60 LYS LYS C . n C 2 61 GLN 61 61 61 GLN GLN C . n C 2 62 LYS 62 62 62 LYS LYS C . n C 2 63 LYS 63 63 63 LYS LYS C . n D 2 1 ALA 1 1 1 ALA ALA D . n D 2 2 THR 2 2 2 THR THR D . n D 2 3 VAL 3 3 3 VAL VAL D . n D 2 4 LYS 4 4 4 LYS LYS D . n D 2 5 PHE 5 5 5 PHE PHE D . n D 2 6 LYS 6 6 6 LYS LYS D . n D 2 7 TYR 7 7 7 TYR TYR D . n D 2 8 LYS 8 8 8 LYS LYS D . n D 2 9 GLY 9 9 9 GLY GLY D . n D 2 10 GLU 10 10 10 GLU GLU D . n D 2 11 GLU 11 11 11 GLU GLU D . n D 2 12 LYS 12 12 12 LYS LYS D . n D 2 13 GLN 13 13 13 GLN GLN D . n D 2 14 VAL 14 14 14 VAL VAL D . n D 2 15 ASP 15 15 15 ASP ASP D . n D 2 16 ILE 16 16 16 ILE ILE D . n D 2 17 SER 17 17 17 SER SER D . n D 2 18 LYS 18 18 18 LYS LYS D . n D 2 19 ILE 19 19 19 ILE ILE D . n D 2 20 LYS 20 20 20 LYS LYS D . n D 2 21 LYS 21 21 21 LYS LYS D . n D 2 22 VAL 22 22 22 VAL VAL D . n D 2 23 TRP 23 23 23 TRP TRP D . n D 2 24 ARG 24 24 24 ARG ARG D . n D 2 25 VAL 25 25 25 VAL VAL D . n D 2 26 GLY 26 26 26 GLY GLY D . n D 2 27 LYS 27 27 27 LYS LYS D . n D 2 28 MET 28 28 28 MET MET D . n D 2 29 ILE 29 29 29 ILE ILE D . n D 2 30 SER 30 30 30 SER SER D . n D 2 31 PHE 31 31 31 PHE PHE D . n D 2 32 THR 32 32 32 THR THR D . n D 2 33 TYR 33 33 33 TYR TYR D . n D 2 34 ASP 34 34 34 ASP ASP D . n D 2 35 GLU 35 35 35 GLU GLU D . n D 2 36 GLY 36 36 36 GLY GLY D . n D 2 37 GLY 37 37 37 GLY GLY D . n D 2 38 GLY 38 38 38 GLY GLY D . n D 2 39 LYS 39 39 39 LYS LYS D . n D 2 40 THR 40 40 40 THR THR D . n D 2 41 GLY 41 41 41 GLY GLY D . n D 2 42 ARG 42 42 42 ARG ARG D . n D 2 43 GLY 43 43 43 GLY GLY D . n D 2 44 ALA 44 44 44 ALA ALA D . n D 2 45 VAL 45 45 45 VAL VAL D . n D 2 46 SER 46 46 46 SER SER D . n D 2 47 GLU 47 47 47 GLU GLU D . n D 2 48 LYS 48 48 48 LYS LYS D . n D 2 49 ASP 49 49 49 ASP ASP D . n D 2 50 ALA 50 50 50 ALA ALA D . n D 2 51 PRO 51 51 51 PRO PRO D . n D 2 52 LYS 52 52 52 LYS LYS D . n D 2 53 GLU 53 53 53 GLU GLU D . n D 2 54 LEU 54 54 54 LEU LEU D . n D 2 55 LEU 55 55 55 LEU LEU D . n D 2 56 GLN 56 56 56 GLN GLN D . n D 2 57 MET 57 57 57 MET MET D . n D 2 58 LEU 58 58 58 LEU LEU D . n D 2 59 GLU 59 59 59 GLU GLU D . n D 2 60 LYS 60 60 60 LYS LYS D . n D 2 61 GLN 61 61 61 GLN GLN D . n D 2 62 LYS 62 62 62 LYS LYS D . n D 2 63 LYS 63 63 63 LYS LYS D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-10-14 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "H5''" A DT 10 ? ? OP2 A DA 11 ? ? 1.49 2 1 "H5''" B DT 22 ? ? OP2 B DA 23 ? ? 1.50 3 1 O C SER 46 ? ? H C ASP 49 ? ? 1.53 4 1 O D SER 46 ? ? H D ASP 49 ? ? 1.54 5 1 O D TYR 7 ? ? H D GLY 9 ? ? 1.56 6 1 O C TYR 7 ? ? H C GLY 9 ? ? 1.56 7 1 O D LEU 54 ? ? H D MET 57 ? ? 1.59 8 1 O C LEU 54 ? ? H C MET 57 ? ? 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.22 122.90 -3.68 0.60 N 2 1 N7 A DA 3 ? ? C8 A DA 3 ? ? N9 A DA 3 ? ? 117.69 113.80 3.89 0.50 N 3 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 117.58 113.10 4.48 0.50 N 4 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.87 106.40 -2.53 0.40 N 5 1 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 117.76 113.10 4.66 0.50 N 6 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.42 113.10 4.32 0.50 N 7 1 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.59 122.90 -4.31 0.60 N 8 1 N7 A DA 11 ? ? C8 A DA 11 ? ? N9 A DA 11 ? ? 117.78 113.80 3.98 0.50 N 9 1 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 117.75 113.10 4.65 0.50 N 10 1 C8 A DG 12 ? ? N9 A DG 12 ? ? C4 A DG 12 ? ? 103.92 106.40 -2.48 0.40 N 11 1 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 119.26 122.90 -3.64 0.60 N 12 1 N7 B DA 15 ? ? C8 B DA 15 ? ? N9 B DA 15 ? ? 117.68 113.80 3.88 0.50 N 13 1 N7 B DG 16 ? ? C8 B DG 16 ? ? N9 B DG 16 ? ? 117.55 113.10 4.45 0.50 N 14 1 C8 B DG 16 ? ? N9 B DG 16 ? ? C4 B DG 16 ? ? 103.88 106.40 -2.52 0.40 N 15 1 N7 B DG 18 ? ? C8 B DG 18 ? ? N9 B DG 18 ? ? 117.74 113.10 4.64 0.50 N 16 1 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 117.41 113.10 4.31 0.50 N 17 1 C6 B DT 22 ? ? C5 B DT 22 ? ? C7 B DT 22 ? ? 118.58 122.90 -4.32 0.60 N 18 1 N7 B DA 23 ? ? C8 B DA 23 ? ? N9 B DA 23 ? ? 117.83 113.80 4.03 0.50 N 19 1 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 117.79 113.10 4.69 0.50 N 20 1 C8 B DG 24 ? ? N9 B DG 24 ? ? C4 B DG 24 ? ? 103.85 106.40 -2.55 0.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE C 5 ? ? 178.05 -156.75 2 1 LYS C 8 ? ? 66.96 -59.22 3 1 LYS C 20 ? ? -165.33 -53.36 4 1 TRP C 23 ? ? -111.20 -163.89 5 1 ARG C 24 ? ? -167.46 101.28 6 1 MET C 28 ? ? -174.83 -112.85 7 1 SER C 30 ? ? -50.64 97.75 8 1 GLU C 35 ? ? -155.39 33.92 9 1 LYS C 39 ? ? -95.37 51.88 10 1 THR C 40 ? ? 64.01 -70.80 11 1 LEU C 54 ? ? -136.98 -53.08 12 1 GLN C 61 ? ? -91.89 -102.40 13 1 PHE D 5 ? ? 178.03 -156.85 14 1 LYS D 8 ? ? 66.88 -59.17 15 1 LYS D 20 ? ? -165.46 -53.40 16 1 TRP D 23 ? ? -111.25 -164.06 17 1 ARG D 24 ? ? -167.38 101.38 18 1 MET D 28 ? ? -174.82 -111.72 19 1 SER D 30 ? ? -50.72 97.67 20 1 GLU D 35 ? ? -155.44 33.91 21 1 LYS D 39 ? ? -95.50 52.00 22 1 THR D 40 ? ? 63.92 -70.84 23 1 LEU D 54 ? ? -137.02 -53.13 24 1 GLN D 61 ? ? -91.86 -102.55 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG C 24 ? ? 0.184 'SIDE CHAIN' 2 1 ARG C 42 ? ? 0.133 'SIDE CHAIN' 3 1 ARG D 24 ? ? 0.183 'SIDE CHAIN' 4 1 ARG D 42 ? ? 0.133 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 1BBX _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.934 -0.302 -0.010 0.040 0.256 1.510 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DT 2 1_555 B DA 11 1_555 -0.481 -0.073 0.052 2.643 -2.544 3.120 2 A_DT2:DA23_B A 2 ? B 23 ? 20 1 1 A DA 3 1_555 B DT 10 1_555 -0.920 -0.373 -0.092 -5.284 -9.107 11.616 3 A_DA3:DT22_B A 3 ? B 22 ? 20 1 1 A DG 4 1_555 B DC 9 1_555 0.654 0.040 0.180 2.352 -4.874 -1.024 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DC 5 1_555 B DG 8 1_555 -0.696 -0.091 0.291 0.143 -4.134 5.829 5 A_DC5:DG20_B A 5 ? B 20 ? 19 1 1 A DG 6 1_555 B DC 7 1_555 -0.914 -0.324 -0.301 -3.204 -5.927 5.324 6 A_DG6:DC19_B A 6 ? B 19 ? 19 1 1 A DC 7 1_555 B DG 6 1_555 0.906 -0.322 -0.297 3.087 -5.902 5.336 7 A_DC7:DG18_B A 7 ? B 18 ? 19 1 1 A DG 8 1_555 B DC 5 1_555 0.693 -0.088 0.291 -0.148 -4.029 5.779 8 A_DG8:DC17_B A 8 ? B 17 ? 19 1 1 A DC 9 1_555 B DG 4 1_555 -0.678 0.032 0.186 -2.527 -4.781 -1.501 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 0.924 -0.373 -0.095 5.337 -9.027 11.587 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DA 11 1_555 B DT 2 1_555 0.488 -0.071 0.052 -2.576 -2.571 3.114 11 A_DA11:DT14_B A 11 ? B 14 ? 20 1 1 A DG 12 1_555 B DC 1 1_555 -0.928 -0.305 -0.010 -0.043 0.242 1.507 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DT 2 1_555 B DA 11 1_555 0.540 0.763 3.514 0.814 34.906 24.520 -3.319 -0.643 2.689 55.958 -1.305 42.445 1 AA_DC1DT2:DA23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DT 2 1_555 B DA 11 1_555 A DA 3 1_555 B DT 10 1_555 0.089 1.863 4.013 -1.196 16.398 25.450 -1.082 -0.511 4.381 33.172 2.419 30.226 2 AA_DT2DA3:DT22DA23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DA 3 1_555 B DT 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.971 -0.382 2.758 -2.848 4.411 43.315 -0.873 1.075 2.763 5.950 3.842 43.617 3 AA_DA3DG4:DC21DT22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DC 5 1_555 B DG 8 1_555 -0.923 1.225 3.643 -1.033 11.466 18.976 -2.150 1.921 3.794 31.320 2.821 22.167 4 AA_DG4DC5:DG20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DC 5 1_555 B DG 8 1_555 A DG 6 1_555 B DC 7 1_555 1.235 0.978 3.874 3.397 15.889 23.413 -2.774 -1.496 3.885 34.352 -7.344 28.434 5 AA_DC5DG6:DC19DG20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DG 6 1_555 B DC 7 1_555 A DC 7 1_555 B DG 6 1_555 -0.001 1.398 3.841 -0.034 -6.179 33.643 3.488 -0.004 3.536 -10.565 0.058 34.190 6 AA_DG6DC7:DG18DC19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DC 7 1_555 B DG 6 1_555 A DG 8 1_555 B DC 5 1_555 -1.241 0.978 3.871 -3.407 15.836 23.414 -2.763 1.506 3.886 34.259 7.371 28.406 7 AA_DC7DG8:DC17DG18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DG 8 1_555 B DC 5 1_555 A DC 9 1_555 B DG 4 1_555 0.911 1.214 3.651 0.936 11.508 18.714 -2.283 -1.947 3.785 31.769 -2.584 21.962 8 AA_DG8DC9:DG16DC17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 0.982 -0.378 2.752 2.882 4.320 43.587 -0.853 -1.083 2.760 5.793 -3.865 43.880 9 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DA 11 1_555 B DT 2 1_555 -0.089 1.863 4.013 1.202 16.413 25.441 -1.087 0.511 4.380 33.205 -2.431 30.226 10 AA_DT10DA11:DT14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DA 11 1_555 B DT 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.538 0.765 3.517 -0.745 34.867 24.494 -3.323 0.651 2.692 55.955 1.195 42.397 11 AA_DA11DG12:DC13DT14_BB A 11 ? B 14 ? A 12 ? B 13 ? #