HEADER COMPLEX (TRANSFERASE/PEPTIDE) 28-APR-98 1BBZ TITLE CRYSTAL STRUCTURE OF THE ABL-SH3 DOMAIN COMPLEXED WITH A DESIGNED TITLE 2 HIGH-AFFINITY PEPTIDE LIGAND: IMPLICATIONS FOR SH3-LIGAND TITLE 3 INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABL TYROSINE KINASE; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE P41; COMPND 8 CHAIN: B, D, F, H; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2 KEYWDS COMPLEX (TRANSFERASE-PEPTIDE), SIGNAL TRANSDUCTION, SH3 DOMAIN, KEYWDS 2 COMPLEX (TRANSFERASE-PEPTIDE) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.T.PISABARRO,L.SERRANO,M.WILMANNS REVDAT 3 02-AUG-23 1BBZ 1 REMARK LINK REVDAT 2 24-FEB-09 1BBZ 1 VERSN REVDAT 1 25-NOV-98 1BBZ 0 JRNL AUTH M.T.PISABARRO,L.SERRANO,M.WILMANNS JRNL TITL CRYSTAL STRUCTURE OF THE ABL-SH3 DOMAIN COMPLEXED WITH A JRNL TITL 2 DESIGNED HIGH-AFFINITY PEPTIDE LIGAND: IMPLICATIONS FOR JRNL TITL 3 SH3-LIGAND INTERACTIONS. JRNL REF J.MOL.BIOL. V. 281 513 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9698566 JRNL DOI 10.1006/JMBI.1998.1932 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.T.PISABARRO,L.SERRANO REMARK 1 TITL RATIONAL DESIGN OF SPECIFIC HIGH-AFFINITY PEPTIDE LIGANDS REMARK 1 TITL 2 FOR THE ABL-SH3 DOMAIN REMARK 1 REF BIOCHEMISTRY V. 35 10634 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.MUSACCHIO,M.SARASTE,M.WILMANNS REMARK 1 TITL HIGH-RESOLUTION CRYSTAL STRUCTURES OF TYROSINE KINASE SH3 REMARK 1 TITL 2 DOMAINS COMPLEXED WITH PROLINE-RICH PEPTIDES REMARK 1 REF NAT.STRUCT.BIOL. V. 1 546 1994 REMARK 1 REFN ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-FACTOR REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.678 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 3.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 226846 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.590 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : 0.58000 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1ABO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WITH DIMENSIONS REMARK 280 0.25X0.25X0.25 MM3 WERE OBTAINED AT ROOM TEMPERATURE BY VAPOUR REMARK 280 DIFFUSION AGAINST A RESERVOIR CONTAINING 0.1 M CITRIC ACID PH REMARK 280 3.1, 2 M AMMONIUM SULPHATE, 0.2 M SODIUM CHLORIDE, AND 1MM DTT/ REMARK 280 EDTA. THE HANGING DROP CONTAINED 1:1 RATIO OF RESERVOIR AND REMARK 280 PROTEIN-PEPTIDE SOLUTIONS., VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.34000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 1 CG OD1 ND2 REMARK 470 ASN A 57 CG OD1 ND2 REMARK 470 SER A 58 OG REMARK 470 ASN E 1 CG OD1 ND2 REMARK 470 ASN E 57 CG OD1 ND2 REMARK 470 ASN G 1 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 VAL G 56 O HOH C 1123 3555 0.82 REMARK 500 OG1 THR C 20 CG1 VAL E 10 3545 1.00 REMARK 500 NE2 GLN A 40 CG ASN G 15 3645 1.06 REMARK 500 CB SER E 18 O HOH C 2024 3555 1.21 REMARK 500 OE1 GLU A 38 CD GLN G 45 3645 1.37 REMARK 500 OE1 GLN A 40 ND2 ASN G 15 3645 1.40 REMARK 500 O HOH C 1024 O HOH G 1011 1455 1.45 REMARK 500 OE1 GLU A 38 CG GLN G 45 3645 1.46 REMARK 500 NE2 GLN A 40 OD1 ASN G 15 3645 1.48 REMARK 500 CG GLN A 45 O HOH G 2052 3645 1.50 REMARK 500 O HOH C 1069 O HOH E 2059 3545 1.63 REMARK 500 CD GLN A 40 ND2 ASN G 15 3645 1.63 REMARK 500 NE2 GLN A 45 O HOH G 1077 3645 1.66 REMARK 500 NE2 GLN A 40 ND2 ASN G 15 3645 1.68 REMARK 500 ND2 ASN C 1 O HOH G 2021 1455 1.70 REMARK 500 CD GLN A 45 O HOH G 2052 3645 1.73 REMARK 500 CA PHE C 9 ND2 ASN G 57 3545 1.74 REMARK 500 CD GLN A 40 CG ASN G 15 3645 1.81 REMARK 500 CD GLN A 45 O HOH G 1077 3645 1.82 REMARK 500 CD GLN A 40 OD1 ASN G 15 3645 1.84 REMARK 500 OE1 GLN A 45 O HOH G 1077 3645 1.84 REMARK 500 O ASP C 8 OD1 ASN G 57 3545 1.87 REMARK 500 OE1 GLU A 38 NE2 GLN G 45 3645 1.91 REMARK 500 O HOH C 1113 O HOH E 2059 3545 1.95 REMARK 500 O ASP C 8 CG ASN G 57 3545 1.99 REMARK 500 CB ASP C 8 CB ASN G 57 3545 1.99 REMARK 500 OE1 GLN C 45 OE1 GLN E 45 2565 2.00 REMARK 500 CD GLU A 38 CG GLN G 45 3645 2.05 REMARK 500 CG2 VAL C 10 O HOH G 2069 3545 2.06 REMARK 500 CA SER E 18 O HOH C 2024 3555 2.07 REMARK 500 NE2 GLN A 40 CB ASN G 15 3645 2.07 REMARK 500 OD2 ASP E 8 O HOH C 1045 3555 2.09 REMARK 500 C ASP C 8 CG ASN G 57 3545 2.09 REMARK 500 N PHE C 9 ND2 ASN G 57 3545 2.09 REMARK 500 O4 SO4 G 3002 O HOH A 2001 3655 2.12 REMARK 500 CH2 TRP G 47 O HOH A 2075 3655 2.14 REMARK 500 CB VAL G 56 O HOH C 1123 3555 2.15 REMARK 500 CZ ARG A 26 CH3 ACE H 0 3645 2.17 REMARK 500 O HOH A 1051 O HOH G 1046 2564 2.18 REMARK 500 O HOH C 1113 O HOH E 1013 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 25 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU C 25 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 57 34.38 77.69 REMARK 500 SER E 12 42.40 -140.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 3003 DBREF 1BBZ A 1 58 UNP P00519 ABL1_HUMAN 64 121 DBREF 1BBZ C 1 58 UNP P00519 ABL1_HUMAN 64 121 DBREF 1BBZ E 1 58 UNP P00519 ABL1_HUMAN 64 121 DBREF 1BBZ G 1 58 UNP P00519 ABL1_HUMAN 64 121 DBREF 1BBZ B 0 10 PDB 1BBZ 1BBZ 0 10 DBREF 1BBZ D 0 10 PDB 1BBZ 1BBZ 0 10 DBREF 1BBZ F 0 10 PDB 1BBZ 1BBZ 0 10 DBREF 1BBZ H 0 10 PDB 1BBZ 1BBZ 0 10 SEQRES 1 A 58 ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER GLY SEQRES 2 A 58 ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU ARG SEQRES 3 A 58 VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU ALA SEQRES 4 A 58 GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ASN TYR SEQRES 5 A 58 ILE THR PRO VAL ASN SER SEQRES 1 B 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO SEQRES 1 C 58 ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER GLY SEQRES 2 C 58 ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU ARG SEQRES 3 C 58 VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU ALA SEQRES 4 C 58 GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ASN TYR SEQRES 5 C 58 ILE THR PRO VAL ASN SER SEQRES 1 D 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO SEQRES 1 E 58 ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER GLY SEQRES 2 E 58 ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU ARG SEQRES 3 E 58 VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU ALA SEQRES 4 E 58 GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ASN TYR SEQRES 5 E 58 ILE THR PRO VAL ASN SER SEQRES 1 F 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO SEQRES 1 G 58 ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER GLY SEQRES 2 G 58 ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU ARG SEQRES 3 G 58 VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU ALA SEQRES 4 G 58 GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ASN TYR SEQRES 5 G 58 ILE THR PRO VAL ASN SER SEQRES 1 H 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO HET ACE B 0 3 HET ACE D 0 3 HET ACE F 0 3 HET ACE H 0 3 HET SO4 A3000 5 HET SO4 C3001 5 HET SO4 E3003 5 HET SO4 G3002 5 HETNAM ACE ACETYL GROUP HETNAM SO4 SULFATE ION FORMUL 2 ACE 4(C2 H4 O) FORMUL 9 SO4 4(O4 S 2-) FORMUL 13 HOH *269(H2 O) HELIX 1 1 SER A 50 TYR A 52 5 3 HELIX 2 2 SER C 50 TYR C 52 5 3 HELIX 3 3 SER E 50 TYR E 52 5 3 HELIX 4 4 SER G 50 TYR G 52 5 3 SHEET 1 A 5 ILE A 53 PRO A 55 0 SHEET 2 A 5 LEU A 2 ALA A 5 -1 N VAL A 4 O THR A 54 SHEET 3 A 5 LYS A 24 TYR A 30 -1 N LEU A 25 O PHE A 3 SHEET 4 A 5 TRP A 36 THR A 41 -1 N GLN A 40 O ARG A 26 SHEET 5 A 5 GLY A 44 PRO A 49 -1 N VAL A 48 O CYS A 37 SHEET 1 B 5 ILE C 53 PRO C 55 0 SHEET 2 B 5 LEU C 2 ALA C 5 -1 N VAL C 4 O THR C 54 SHEET 3 B 5 LYS C 24 TYR C 30 -1 N LEU C 25 O PHE C 3 SHEET 4 B 5 TRP C 36 THR C 41 -1 N GLN C 40 O ARG C 26 SHEET 5 B 5 GLY C 44 PRO C 49 -1 N VAL C 48 O CYS C 37 SHEET 1 C 5 ILE E 53 PRO E 55 0 SHEET 2 C 5 LEU E 2 ALA E 5 -1 N VAL E 4 O THR E 54 SHEET 3 C 5 LYS E 24 TYR E 30 -1 N LEU E 25 O PHE E 3 SHEET 4 C 5 TRP E 36 THR E 41 -1 N GLN E 40 O ARG E 26 SHEET 5 C 5 GLY E 44 PRO E 49 -1 N VAL E 48 O CYS E 37 SHEET 1 D 5 ILE G 53 PRO G 55 0 SHEET 2 D 5 LEU G 2 ALA G 5 -1 N VAL G 4 O THR G 54 SHEET 3 D 5 LYS G 24 TYR G 30 -1 N LEU G 25 O PHE G 3 SHEET 4 D 5 TRP G 36 GLN G 40 -1 N GLN G 40 O ARG G 26 SHEET 5 D 5 GLN G 45 PRO G 49 -1 N VAL G 48 O CYS G 37 LINK NH2AARG A 26 CH3 ACE H 0 3655 1555 1.48 LINK C ACE B 0 N ALA B 1 1555 1555 1.33 LINK C ACE D 0 N ALA D 1 1555 1555 1.32 LINK C ACE F 0 N ALA F 1 1555 1555 1.32 LINK C ACE H 0 N ALA H 1 1555 1555 1.33 SITE 1 AC1 7 ASN A 31 HIS A 32 HOH A1103 HOH A2033 SITE 2 AC1 7 HOH A2093 ALA B 1 HOH B1015 SITE 1 AC2 5 ASN C 31 HIS C 32 ACE D 0 ALA D 1 SITE 2 AC2 5 HOH D1124 SITE 1 AC3 6 HOH A2001 ASN G 31 HIS G 32 HOH G2036 SITE 2 AC3 6 ALA H 1 HOH H2053 SITE 1 AC4 6 ASN E 31 HIS E 32 HOH E1019 HOH E2078 SITE 2 AC4 6 ACE F 0 ALA F 1 CRYST1 46.680 73.790 80.000 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012500 0.00000 MTRIX1 1 0.997724 -0.067192 0.005638 13.59700 1 MTRIX2 1 0.011972 0.094239 -0.995478 53.02210 1 MTRIX3 1 0.066357 0.993279 0.094829 -22.23110 1 MTRIX1 2 0.999017 -0.043051 -0.010579 13.34300 1 MTRIX2 2 -0.010289 0.006953 -0.999923 55.60300 1 MTRIX3 2 0.043121 0.999049 0.006503 -20.70860 1 MTRIX1 3 0.999782 -0.018786 0.009149 -11.24350 1 MTRIX2 3 -0.008709 0.023367 0.999689 20.00080 1 MTRIX3 3 -0.018994 -0.999550 0.023198 55.74710 1 MTRIX1 4 0.999223 -0.006459 0.038870 -12.18630 1 MTRIX2 4 -0.038098 0.093375 0.994902 17.22480 1 MTRIX3 4 -0.010055 -0.995610 0.093057 54.31820 1 MTRIX1 5 0.998796 -0.035591 0.033755 -22.78900 1 MTRIX2 5 -0.036358 -0.999088 0.022386 76.97220 1 MTRIX3 5 0.032927 -0.023586 -0.999179 35.57220 1 MTRIX1 6 0.999078 -0.033958 0.026286 -22.79210 1 MTRIX2 6 -0.035198 -0.998215 0.048245 76.33460 1 MTRIX3 6 0.024600 -0.049125 -0.998490 36.76420 1