HEADER PEPTIDE RECOGNITION 20-MAY-98 1BE9 TITLE THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 IN COMPLEX WITH TITLE 2 A C-TERMINAL PEPTIDE DERIVED FROM CRIPT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSD-95; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE THIRD PDZ DOMAIN OF PSD-95; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CRIPT; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: C-TERMINAL PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1; SOURCE 9 MOL_ID: 2 KEYWDS PEPTIDE RECOGNITION, PROTEIN LOCALIZATION EXPDTA X-RAY DIFFRACTION AUTHOR D.A.DOYLE,A.LEE,J.LEWIS,E.KIM,M.SHENG,R.MACKINNON REVDAT 6 07-FEB-24 1BE9 1 SEQADV REVDAT 5 07-MAR-18 1BE9 1 REMARK REVDAT 4 22-SEP-10 1BE9 1 REMARK REVDAT 3 24-FEB-09 1BE9 1 VERSN REVDAT 2 01-APR-03 1BE9 1 JRNL REVDAT 1 21-OCT-98 1BE9 0 JRNL AUTH D.A.DOYLE,A.LEE,J.LEWIS,E.KIM,M.SHENG,R.MACKINNON JRNL TITL CRYSTAL STRUCTURES OF A COMPLEXED AND PEPTIDE-FREE MEMBRANE JRNL TITL 2 PROTEIN-BINDING DOMAIN: MOLECULAR BASIS OF PEPTIDE JRNL TITL 3 RECOGNITION BY PDZ. JRNL REF CELL(CAMBRIDGE,MASS.) V. 85 1067 1996 JRNL PUBL CELL PRESS JRNL REFN ISSN 0092-8674 JRNL PMID 8674113 JRNL DOI 10.1016/S0092-8674(00)81307-0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.L.DANIELS,A.R.COHEN,J.M.ANDERSON,A.T.BRUNGER REMARK 1 TITL CRYSTAL STRUCTURE OF THE HCASK PDZ DOMAIN REVEALS THE REMARK 1 TITL 2 STRUCTURAL BASIS OF CLASS II PDZ DOMAIN TARGET RECOGNITION REMARK 1 REF NAT.STRUCT.BIOL. V. 5 317 1998 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.NIETHAMMER,J.G.VALTSCHANOFF,T.M.KAPOOR,D.W.ALLISON, REMARK 1 AUTH 2 T.M.WEINBERG,A.M.CRAIG,M.SHENG REMARK 1 TITL CRIPT, A NOVEL POSTSYNAPTIC PROTEIN THAT BINDS TO THE THIRD REMARK 1 TITL 2 PDZ DOMAIN OF PSD-95/SAP90 REMARK 1 REF NEURON V. 20 693 1998 REMARK 1 REFN ISSN 0896-6273 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.CABRAL,C.PETOSA,M.J.SUTCLIFFE,S.RAZA,O.BYRON,F.POY, REMARK 1 AUTH 2 S.M.MARFATIA,A.H.CHISHTI,R.C.LIDDINGTON REMARK 1 TITL CRYSTAL STRUCTURE OF A PDZ DOMAIN REMARK 1 REF NATURE V. 382 649 1996 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 899 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : SIEMENS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 ANALYSIS REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE PEPTIDE-FREE PDZ3 MODEL WAS USED IN A RIGID BODY REMARK 200 REFINEMENT, FOLLOWED BY CYCLES OF LEAST-SQUARES REFINEMENT AND REMARK 200 MODEL BUILDING. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM CITRATE, 0.1 M HEPES, PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.67000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.67000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.67000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.67000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.67000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.67000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.67000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.67000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.67000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.67000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.67000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.67000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.67000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.67000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 67.00500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 22.33500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.33500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 67.00500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 67.00500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.00500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 22.33500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 22.33500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 67.00500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 22.33500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 67.00500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 22.33500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 67.00500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 22.33500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 22.33500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 22.33500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 67.00500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 22.33500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 67.00500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 67.00500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 67.00500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 22.33500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 22.33500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 67.00500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 67.00500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 22.33500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 22.33500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 22.33500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 22.33500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 67.00500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 22.33500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 67.00500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 22.33500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 67.00500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 67.00500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 67.00500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 465 PRO A 299 REMARK 465 GLU A 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 301 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 334 -59.02 7.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: PEP REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: RESIDUES INVOLVED IN THE BINDING OF THE FOUR C REMARK 800 -TERMINAL RESIDUES OF CRIPT. DBREF 1BE9 A 298 414 UNP P31016 DLG4_RAT 295 420 DBREF 1BE9 B 5 9 PDB 1BE9 1BE9 5 9 SEQADV 1BE9 A UNP P31016 VAL 297 DELETION SEQADV 1BE9 A UNP P31016 ALA 298 DELETION SEQADV 1BE9 A UNP P31016 LYS 299 DELETION SEQADV 1BE9 GLU A 300 UNP P31016 ASP 300 CONFLICT SEQADV 1BE9 PHE A 301 UNP P31016 LEU 301 CONFLICT SEQADV 1BE9 ILE A 328 UNP P31016 VAL 328 CONFLICT SEQADV 1BE9 A UNP P31016 LYS 403 DELETION SEQADV 1BE9 A UNP P31016 ILE 404 DELETION SEQADV 1BE9 A UNP P31016 HIS 405 DELETION SEQADV 1BE9 A UNP P31016 ASP 406 DELETION SEQADV 1BE9 A UNP P31016 LEU 407 DELETION SEQADV 1BE9 A UNP P31016 ARG 408 DELETION SEQADV 1BE9 ASN A 403 UNP P31016 GLU 409 CONFLICT SEQADV 1BE9 SER A 404 UNP P31016 GLN 410 CONFLICT SEQADV 1BE9 ARG A 405 UNP P31016 LEU 411 CONFLICT SEQADV 1BE9 VAL A 406 UNP P31016 MET 412 CONFLICT SEQADV 1BE9 GLY A 410 UNP P31016 LEU 416 CONFLICT SEQADV 1BE9 ARG A 411 UNP P31016 GLY 417 CONFLICT SEQADV 1BE9 ILE A 412 UNP P31016 SER 418 CONFLICT SEQADV 1BE9 VAL A 413 UNP P31016 GLY 419 CONFLICT SEQRES 1 A 119 GLY SER PRO GLU PHE LEU GLY GLU GLU ASP ILE PRO ARG SEQRES 2 A 119 GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SER THR GLY SEQRES 3 A 119 LEU GLY PHE ASN ILE ILE GLY GLY GLU ASP GLY GLU GLY SEQRES 4 A 119 ILE PHE ILE SER PHE ILE LEU ALA GLY GLY PRO ALA ASP SEQRES 5 A 119 LEU SER GLY GLU LEU ARG LYS GLY ASP GLN ILE LEU SER SEQRES 6 A 119 VAL ASN GLY VAL ASP LEU ARG ASN ALA SER HIS GLU GLN SEQRES 7 A 119 ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN THR VAL THR SEQRES 8 A 119 ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SER ARG PHE SEQRES 9 A 119 GLU ALA ASN SER ARG VAL ASN SER SER GLY ARG ILE VAL SEQRES 10 A 119 THR ASN SEQRES 1 B 5 LYS GLN THR SER VAL FORMUL 3 HOH *146(H2 O) HELIX 1 1 LEU A 302 GLU A 304 5 3 HELIX 2 2 PRO A 346 SER A 350 1 5 HELIX 3 3 HIS A 372 LYS A 380 1 9 HELIX 4 4 PRO A 394 ARG A 399 1 6 SHEET 1 A 3 ARG A 312 HIS A 317 0 SHEET 2 A 3 THR A 385 TYR A 392 -1 N ALA A 390 O ARG A 312 SHEET 3 A 3 ASP A 357 VAL A 362 -1 N SER A 361 O ILE A 389 SHEET 1 B 2 SER A 404 VAL A 406 0 SHEET 2 B 2 ILE A 412 THR A 414 -1 N VAL A 413 O ARG A 405 SHEET 1 C 2 PHE A 325 GLY A 329 0 SHEET 2 C 2 ILE A 336 ILE A 341 -1 N PHE A 340 O ASN A 326 SITE 1 PEP 9 GLY A 322 LEU A 323 GLY A 324 PHE A 325 SITE 2 PEP 9 ASN A 326 ILE A 327 SER A 339 HIS A 372 SITE 3 PEP 9 LEU A 379 CRYST1 89.340 89.340 89.340 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011193 0.00000 TER 865 ASN A 415 TER 901 VAL B 9 HETATM 902 O HOH A 1 40.961 60.530 42.380 1.00 12.71 O HETATM 903 O HOH A 2 33.163 55.055 34.097 1.00 11.94 O HETATM 904 O HOH A 3 51.632 51.071 26.251 1.00 10.16 O HETATM 905 O HOH A 4 48.497 53.463 46.269 1.00 24.55 O HETATM 906 O HOH A 5 48.767 61.167 32.469 1.00 23.73 O HETATM 907 O HOH A 6 41.840 47.699 43.394 1.00 43.65 O HETATM 908 O HOH A 7 29.082 71.922 32.482 1.00 26.97 O HETATM 909 O HOH A 8 44.545 67.468 26.440 1.00 8.75 O HETATM 910 O HOH A 9 29.340 61.123 39.156 1.00 28.81 O HETATM 911 O HOH A 10 45.699 67.217 32.866 1.00 14.57 O HETATM 912 O HOH A 11 22.990 59.874 35.246 1.00 20.07 O HETATM 913 O HOH A 12 54.278 47.671 41.165 1.00 13.24 O HETATM 914 O HOH A 13 39.918 55.785 43.733 1.00 12.30 O HETATM 915 O HOH A 14 29.423 65.286 35.866 1.00 12.97 O HETATM 916 O HOH A 15 51.704 60.792 50.669 1.00 28.13 O HETATM 917 O HOH A 16 50.242 46.605 40.472 1.00 23.27 O HETATM 918 O HOH A 17 56.297 53.967 33.476 1.00 57.50 O HETATM 919 O HOH A 18 41.314 66.804 39.821 1.00 21.18 O HETATM 920 O HOH A 19 53.550 44.559 34.846 1.00 29.16 O HETATM 921 O HOH A 20 43.740 62.291 41.672 1.00 13.93 O HETATM 922 O HOH A 21 41.084 73.460 29.823 1.00 29.18 O HETATM 923 O HOH A 22 48.992 58.241 35.444 1.00 23.69 O HETATM 924 O HOH A 23 41.273 53.696 45.004 1.00 12.23 O HETATM 925 O HOH A 24 26.569 64.812 27.527 1.00 34.41 O HETATM 926 O HOH A 25 37.846 72.885 37.540 1.00 33.75 O HETATM 927 O HOH A 26 51.068 42.858 29.530 1.00 21.20 O HETATM 928 O HOH A 27 45.561 62.118 20.676 1.00 20.99 O HETATM 929 O HOH A 28 47.450 56.763 45.024 1.00 28.99 O HETATM 930 O HOH A 29 43.655 73.699 23.793 1.00 21.20 O HETATM 931 O HOH A 30 51.568 47.786 44.719 1.00 47.06 O HETATM 932 O HOH A 31 29.766 72.418 44.396 1.00 63.73 O HETATM 933 O HOH A 32 49.099 45.307 32.755 1.00 21.59 O HETATM 934 O HOH A 33 29.919 69.029 22.319 1.00 17.10 O HETATM 935 O HOH A 34 50.132 57.535 37.472 1.00 25.35 O HETATM 936 O HOH A 35 48.697 74.105 24.449 1.00 32.13 O HETATM 937 O HOH A 36 44.996 64.300 38.499 1.00 28.83 O HETATM 938 O HOH A 37 34.100 76.770 26.519 1.00 21.52 O HETATM 939 O HOH A 38 47.986 64.609 33.734 1.00 30.49 O HETATM 940 O HOH A 39 47.579 62.610 48.685 1.00 64.69 O HETATM 941 O HOH A 40 40.689 74.727 27.571 1.00 40.09 O HETATM 942 O HOH A 41 26.047 52.911 20.516 1.00 35.56 O HETATM 943 O HOH A 42 55.459 52.578 28.020 1.00 24.57 O HETATM 944 O HOH A 43 39.475 68.874 40.071 1.00 22.21 O HETATM 945 O HOH A 44 50.784 71.923 28.012 1.00 33.03 O HETATM 946 O HOH A 45 49.811 51.435 45.445 1.00 20.03 O HETATM 947 O HOH A 46 57.035 43.490 32.844 1.00 38.53 O HETATM 948 O HOH A 47 44.418 61.775 39.092 1.00 15.62 O HETATM 949 O HOH A 48 37.968 67.671 16.713 1.00 31.42 O HETATM 950 O HOH A 49 32.489 58.411 18.716 1.00 30.59 O HETATM 951 O HOH A 50 35.075 50.364 37.935 1.00 52.25 O HETATM 952 O HOH A 51 48.014 55.098 48.775 1.00 58.59 O HETATM 953 O HOH A 52 39.832 73.005 33.975 1.00 66.84 O HETATM 954 O HOH A 53 52.622 54.743 32.424 1.00 41.84 O HETATM 955 O HOH A 54 30.606 48.329 24.100 1.00 68.85 O HETATM 956 O HOH A 55 34.710 66.032 22.294 1.00 17.87 O HETATM 957 O HOH A 58 28.027 69.138 19.994 1.00 34.80 O HETATM 958 O HOH A 59 52.823 53.890 29.423 1.00 21.35 O HETATM 959 O HOH A 60 55.104 43.796 25.792 1.00 21.63 O HETATM 960 O HOH A 61 40.328 51.000 44.206 1.00 48.95 O HETATM 961 O HOH A 62 49.496 62.978 30.726 1.00 23.26 O HETATM 962 O HOH A 63 45.975 42.703 32.082 1.00 35.54 O HETATM 963 O HOH A 64 58.094 52.870 40.571 1.00 32.05 O HETATM 964 O HOH A 65 37.702 77.552 21.354 1.00 26.84 O HETATM 965 O HOH A 66 34.488 72.529 41.815 1.00 37.04 O HETATM 966 O HOH A 67 28.310 66.894 37.793 1.00 24.22 O HETATM 967 O HOH A 68 43.552 61.819 22.758 1.00 19.72 O HETATM 968 O HOH A 69 46.001 68.724 39.742 1.00 59.28 O HETATM 969 O HOH A 70 28.682 74.528 27.690 1.00 34.97 O HETATM 970 O HOH A 71 56.839 42.387 26.794 1.00 29.02 O HETATM 971 O HOH A 72 39.083 74.920 30.856 1.00 70.57 O HETATM 972 O HOH A 73 31.423 71.122 21.985 1.00 21.38 O HETATM 973 O HOH A 74 25.376 53.846 35.971 1.00 19.87 O HETATM 974 O HOH A 75 26.372 54.191 33.703 1.00 34.48 O HETATM 975 O HOH A 76 26.873 50.878 19.425 1.00 44.93 O HETATM 976 O HOH A 77 25.677 58.874 25.270 1.00 16.96 O HETATM 977 O HOH A 78 50.841 72.982 25.585 1.00 36.52 O HETATM 978 O HOH A 79 56.650 49.867 43.659 1.00 39.75 O HETATM 979 O HOH A 80 28.216 71.924 28.090 1.00 49.55 O HETATM 980 O HOH A 81 58.906 50.256 40.887 1.00 49.05 O HETATM 981 O HOH A 82 49.779 44.840 36.664 1.00 31.14 O HETATM 982 O HOH A 83 42.286 50.967 41.198 1.00 45.96 O HETATM 983 O HOH A 84 43.674 65.074 42.496 1.00 29.23 O HETATM 984 O HOH A 86 24.605 59.337 28.171 1.00 26.56 O HETATM 985 O HOH A 87 36.834 68.826 42.903 1.00 51.44 O HETATM 986 O HOH A 88 29.495 77.471 26.804 1.00 61.03 O HETATM 987 O HOH A 90 47.571 46.656 39.917 1.00 38.45 O HETATM 988 O HOH A 91 35.796 76.124 19.575 1.00 29.43 O HETATM 989 O HOH A 92 35.534 47.335 29.325 1.00 42.25 O HETATM 990 O HOH A 93 26.238 57.980 40.114 1.00 47.21 O HETATM 991 O HOH A 94 35.881 63.688 46.787 1.00 40.37 O HETATM 992 O HOH A 95 50.447 62.569 43.550 1.00 65.32 O HETATM 993 O HOH A 96 43.484 44.061 27.782 1.00 34.29 O HETATM 994 O HOH A 97 52.928 62.437 39.621 1.00 66.97 O HETATM 995 O HOH A 98 54.664 41.473 32.751 1.00 52.16 O HETATM 996 O HOH A 99 47.251 66.003 36.470 1.00 46.22 O HETATM 997 O HOH A 100 25.925 73.504 26.403 1.00 59.53 O HETATM 998 O HOH A 102 62.401 58.016 44.879 1.00 41.48 O HETATM 999 O HOH A 103 30.512 50.469 21.988 1.00 27.81 O HETATM 1000 O HOH A 104 37.358 48.365 36.186 1.00 26.28 O HETATM 1001 O HOH A 105 43.390 44.915 37.531 1.00 52.30 O HETATM 1002 O HOH A 106 52.874 72.826 29.215 1.00 44.97 O HETATM 1003 O HOH A 107 24.817 69.411 25.237 1.00 49.85 O HETATM 1004 O HOH A 108 26.035 61.622 37.886 1.00 48.56 O HETATM 1005 O HOH A 109 31.395 50.649 32.076 1.00 38.81 O HETATM 1006 O HOH A 110 39.688 47.049 34.306 1.00 43.55 O HETATM 1007 O HOH A 111 22.678 55.542 34.246 1.00 29.33 O HETATM 1008 O HOH A 112 32.517 51.103 37.465 1.00 31.87 O HETATM 1009 O HOH A 113 49.962 55.529 47.252 1.00 30.40 O HETATM 1010 O HOH A 114 39.705 42.179 39.639 1.00 63.69 O HETATM 1011 O HOH A 115 34.589 42.251 29.628 1.00 52.71 O HETATM 1012 O HOH A 116 27.657 74.083 24.629 1.00 32.64 O HETATM 1013 O HOH A 117 24.069 57.333 32.358 1.00 18.75 O HETATM 1014 O HOH A 119 24.485 63.250 22.488 1.00 59.39 O HETATM 1015 O HOH A 120 52.575 58.557 35.458 1.00 52.23 O HETATM 1016 O HOH A 122 48.635 49.654 43.846 1.00 25.00 O HETATM 1017 O HOH A 123 28.509 58.783 38.811 1.00 31.00 O HETATM 1018 O HOH A 124 29.103 42.005 30.145 1.00 53.26 O HETATM 1019 O HOH A 125 48.211 69.807 21.082 1.00 59.51 O HETATM 1020 O HOH A 126 35.070 73.557 39.020 1.00 51.60 O HETATM 1021 O HOH A 127 56.751 56.241 44.454 1.00 54.58 O HETATM 1022 O HOH A 128 45.642 72.003 40.094 1.00 29.86 O HETATM 1023 O HOH A 129 26.878 68.512 35.889 1.00 26.09 O HETATM 1024 O HOH A 130 46.154 60.015 49.122 1.00 52.18 O HETATM 1025 O HOH A 131 43.404 59.562 48.846 1.00 30.83 O HETATM 1026 O HOH A 132 43.834 66.596 40.110 1.00 30.96 O HETATM 1027 O HOH A 133 53.536 60.826 37.538 1.00 45.05 O HETATM 1028 O HOH A 134 56.552 55.990 39.272 1.00 44.69 O HETATM 1029 O HOH A 135 35.504 76.641 35.538 1.00 48.35 O HETATM 1030 O HOH A 136 40.976 73.882 22.433 1.00 39.53 O HETATM 1031 O HOH A 137 24.085 59.835 39.148 1.00 37.80 O HETATM 1032 O HOH A 138 44.707 75.204 34.681 1.00 43.98 O HETATM 1033 O HOH A 140 50.508 56.090 52.391 1.00 48.13 O HETATM 1034 O HOH A 141 21.629 62.350 34.167 1.00 70.55 O HETATM 1035 O HOH A 142 40.259 67.994 18.625 1.00 65.65 O HETATM 1036 O HOH A 143 40.255 70.436 18.966 1.00 48.88 O HETATM 1037 O HOH A 144 29.306 61.658 18.353 1.00 68.72 O HETATM 1038 O HOH A 146 27.088 64.919 39.110 1.00 40.27 O HETATM 1039 O HOH B 56 41.900 63.663 21.567 1.00 16.70 O HETATM 1040 O HOH B 57 37.314 60.044 17.990 1.00 20.64 O HETATM 1041 O HOH B 85 40.629 54.188 17.399 1.00 23.73 O HETATM 1042 O HOH B 89 33.515 54.764 19.863 1.00 36.51 O HETATM 1043 O HOH B 101 38.169 51.254 19.159 1.00 53.29 O HETATM 1044 O HOH B 118 38.095 49.467 25.570 1.00 44.76 O HETATM 1045 O HOH B 121 41.515 47.569 20.703 1.00 52.80 O HETATM 1046 O HOH B 139 36.648 54.593 18.449 1.00 38.91 O HETATM 1047 O HOH B 145 39.705 46.113 23.703 1.00 51.08 O MASTER 351 0 0 4 7 0 3 6 1045 2 0 11 END