HEADER HISTONE PROTEIN 28-SEP-95 1BFM TITLE HISTONE B FROM METHANOTHERMUS FERVIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HMFB, RHMFB, ARCHAEAL HISTONE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMUS FERVIDUS; SOURCE 3 ORGANISM_TAXID: 2180; SOURCE 4 CELL_LINE: JM105; SOURCE 5 GENE: HMFB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK223-3; SOURCE 10 EXPRESSION_SYSTEM_GENE: HMFB KEYWDS ARCHAEAL HISTONE PROTEIN, DNA BINDING PROTEIN HMF-2, HISTONE PROTEIN EXPDTA SOLUTION NMR NUMMDL 33 AUTHOR M.R.STARICH,K.SANDMAN,J.N.REEVE,M.F.SUMMERS REVDAT 3 16-FEB-22 1BFM 1 REMARK REVDAT 2 24-FEB-09 1BFM 1 VERSN REVDAT 1 29-JAN-96 1BFM 0 JRNL AUTH M.R.STARICH,K.SANDMAN,J.N.REEVE,M.F.SUMMERS JRNL TITL NMR STRUCTURE OF HMFB FROM THE HYPERTHERMOPHILE, JRNL TITL 2 METHANOTHERMUS FERVIDUS, CONFIRMS THAT THIS ARCHAEAL PROTEIN JRNL TITL 3 IS A HISTONE. JRNL REF J.MOL.BIOL. V. 255 187 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8568866 JRNL DOI 10.1006/JMBI.1996.0016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BFM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171697. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 33 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 14 PHE A 67 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 19 PHE B 67 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 23 PHE B 67 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 32 PHE A 67 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -162.69 -163.04 REMARK 500 1 LEU A 3 102.29 -57.22 REMARK 500 1 ILE A 31 -73.23 -61.42 REMARK 500 1 ARG A 52 114.93 172.47 REMARK 500 1 LYS A 53 28.81 178.66 REMARK 500 1 THR A 54 150.14 63.45 REMARK 500 1 ARG A 66 -76.60 -64.68 REMARK 500 1 GLU B 2 47.42 -97.67 REMARK 500 1 LEU B 3 86.28 58.56 REMARK 500 1 ARG B 19 100.01 66.53 REMARK 500 1 ILE B 31 -72.56 -61.14 REMARK 500 1 ALA B 40 -70.53 -61.88 REMARK 500 1 PHE B 67 -73.20 -60.85 REMARK 500 1 LYS B 68 -62.72 178.43 REMARK 500 2 LEU A 3 81.16 60.30 REMARK 500 2 GLU A 18 -75.32 -122.55 REMARK 500 2 ARG A 52 -162.71 55.21 REMARK 500 2 LYS A 53 -81.28 70.23 REMARK 500 2 LYS A 68 -170.57 60.97 REMARK 500 2 ILE B 31 -73.46 -61.15 REMARK 500 2 ALA B 40 -70.90 -61.92 REMARK 500 2 ARG B 52 -163.80 178.71 REMARK 500 2 LYS B 53 -93.58 76.02 REMARK 500 3 GLU A 2 112.33 58.67 REMARK 500 3 ARG A 19 107.71 -160.96 REMARK 500 3 ARG A 52 80.05 54.21 REMARK 500 3 LYS A 68 -169.63 178.69 REMARK 500 3 GLU B 18 -25.67 -171.05 REMARK 500 3 THR B 54 -176.59 60.34 REMARK 500 3 LYS B 68 -169.15 61.59 REMARK 500 4 GLU A 2 103.17 58.48 REMARK 500 4 ALA A 17 -163.85 -66.51 REMARK 500 4 ALA A 40 -74.56 -61.72 REMARK 500 4 VAL A 64 -72.01 -66.09 REMARK 500 4 LYS A 68 82.93 64.64 REMARK 500 4 GLU B 2 -159.20 -134.24 REMARK 500 4 GLU B 18 -74.65 -82.27 REMARK 500 4 ILE B 31 -72.78 -61.04 REMARK 500 4 LYS B 68 -76.58 62.17 REMARK 500 5 GLU A 2 -161.48 58.44 REMARK 500 5 ILE A 31 -72.95 -61.42 REMARK 500 5 ARG A 52 -167.03 58.64 REMARK 500 5 LYS A 53 98.13 64.82 REMARK 500 5 THR A 54 117.47 71.65 REMARK 500 5 VAL A 64 -73.64 -61.22 REMARK 500 5 GLU B 2 -166.44 58.57 REMARK 500 5 GLU B 18 -72.37 -161.25 REMARK 500 5 ILE B 31 -70.05 -60.87 REMARK 500 5 ALA B 40 -75.11 -64.20 REMARK 500 5 THR B 54 127.36 70.10 REMARK 500 REMARK 500 THIS ENTRY HAS 413 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 19 PHE B 67 0.09 SIDE CHAIN REMARK 500 23 PHE B 67 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 ALA A 29 -10.51 REMARK 500 1 ARG A 48 -12.30 REMARK 500 1 ALA A 50 11.20 REMARK 500 1 ALA B 15 10.92 REMARK 500 1 ALA B 29 -10.46 REMARK 500 1 GLU B 61 -11.70 REMARK 500 1 LEU B 62 -10.26 REMARK 500 2 LEU A 32 -10.29 REMARK 500 2 ALA A 50 10.74 REMARK 500 2 LEU A 62 -10.84 REMARK 500 2 ASP B 14 -10.70 REMARK 500 2 ALA B 15 10.43 REMARK 500 2 THR B 27 -10.04 REMARK 500 2 LEU B 28 -12.18 REMARK 500 2 ALA B 29 -11.51 REMARK 500 2 ARG B 48 -11.20 REMARK 500 2 GLU B 61 -12.59 REMARK 500 3 LYS A 13 -11.58 REMARK 500 3 ALA A 29 -12.50 REMARK 500 3 MET A 35 -10.50 REMARK 500 3 ARG A 37 -11.83 REMARK 500 3 ALA A 50 10.56 REMARK 500 3 PHE A 67 10.03 REMARK 500 3 GLU B 2 12.25 REMARK 500 3 ASP B 14 -11.21 REMARK 500 3 ALA B 15 10.58 REMARK 500 3 LEU B 28 -13.49 REMARK 500 3 LEU B 32 -14.02 REMARK 500 3 GLU B 33 11.06 REMARK 500 4 ASP A 14 -10.18 REMARK 500 4 ALA A 15 10.23 REMARK 500 4 LEU A 28 -10.88 REMARK 500 4 ALA A 29 -11.90 REMARK 500 4 LEU A 32 -10.98 REMARK 500 4 GLU A 34 -10.54 REMARK 500 4 THR B 27 -10.13 REMARK 500 4 ALA B 29 -11.61 REMARK 500 5 ASP A 14 -10.66 REMARK 500 5 LYS A 45 -10.06 REMARK 500 5 ALA A 50 10.58 REMARK 500 5 GLU A 58 -10.31 REMARK 500 5 ASP A 59 10.08 REMARK 500 5 ALA A 63 -12.94 REMARK 500 5 ILE B 8 -10.65 REMARK 500 5 ASP B 14 -11.16 REMARK 500 5 ALA B 15 10.37 REMARK 500 5 THR B 27 -10.11 REMARK 500 5 LEU B 32 -10.53 REMARK 500 5 LEU B 62 -10.73 REMARK 500 6 MET A 35 -10.81 REMARK 500 REMARK 500 THIS ENTRY HAS 240 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1BFM A 1 69 UNP P19267 HMFB_METFE 1 69 DBREF 1BFM B 1 69 UNP P19267 HMFB_METFE 1 69 SEQRES 1 A 69 MET GLU LEU PRO ILE ALA PRO ILE GLY ARG ILE ILE LYS SEQRES 2 A 69 ASP ALA GLY ALA GLU ARG VAL SER ASP ASP ALA ARG ILE SEQRES 3 A 69 THR LEU ALA LYS ILE LEU GLU GLU MET GLY ARG ASP ILE SEQRES 4 A 69 ALA SER GLU ALA ILE LYS LEU ALA ARG HIS ALA GLY ARG SEQRES 5 A 69 LYS THR ILE LYS ALA GLU ASP ILE GLU LEU ALA VAL ARG SEQRES 6 A 69 ARG PHE LYS LYS SEQRES 1 B 69 MET GLU LEU PRO ILE ALA PRO ILE GLY ARG ILE ILE LYS SEQRES 2 B 69 ASP ALA GLY ALA GLU ARG VAL SER ASP ASP ALA ARG ILE SEQRES 3 B 69 THR LEU ALA LYS ILE LEU GLU GLU MET GLY ARG ASP ILE SEQRES 4 B 69 ALA SER GLU ALA ILE LYS LEU ALA ARG HIS ALA GLY ARG SEQRES 5 B 69 LYS THR ILE LYS ALA GLU ASP ILE GLU LEU ALA VAL ARG SEQRES 6 B 69 ARG PHE LYS LYS HELIX 1 1 ILE A 5 ALA A 15 1 11 HELIX 2 2 ASP A 22 ALA A 50 1 29 HELIX 3 3 ALA A 57 PHE A 67 1 11 HELIX 4 4 ILE B 5 ALA B 15 1 11 HELIX 5 5 ASP B 22 ALA B 50 1 29 HELIX 6 6 ALA B 57 PHE B 67 1 11 SHEET 1 A 2 ARG A 19 VAL A 20 0 SHEET 2 A 2 THR B 54 ILE B 55 1 N ILE B 55 O ARG A 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1