HEADER DNA BINDING PROTEIN 20-FEB-96 1BGW TITLE TOPOISOMERASE RESIDUES 410-1202, COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOPOISOMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 410 - 1202; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS ISOMERASE, TOPOISOMERASE, DNA-BINDING, PHOSPHORYLATED NUCLEAR KEYWDS 2 PROTEIN, DNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BERGER,S.J.GAMBLIN,S.C.HARRISON,J.C.WANG REVDAT 3 07-FEB-24 1BGW 1 KEYWDS SEQADV REVDAT 2 24-FEB-09 1BGW 1 VERSN REVDAT 1 11-JUL-96 1BGW 0 JRNL AUTH J.M.BERGER,S.J.GAMBLIN,S.C.HARRISON,J.C.WANG JRNL TITL STRUCTURE AND MECHANISM OF DNA TOPOISOMERASE II. JRNL REF NATURE V. 379 225 1996 JRNL REFN ISSN 0028-0836 JRNL PMID 8538787 JRNL DOI 10.1038/379225A0 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 40049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5561 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 14.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.75000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 77.05000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 77.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.62500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 77.05000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 77.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.87500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 77.05000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.62500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 77.05000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.87500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 127.50000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 410 REMARK 465 ASN A 411 REMARK 465 ALA A 412 REMARK 465 LEU A 413 REMARK 465 LYS A 414 REMARK 465 LYS A 415 REMARK 465 SER A 416 REMARK 465 ASP A 417 REMARK 465 GLY A 418 REMARK 465 THR A 419 REMARK 465 ASN A 634 REMARK 465 ASP A 635 REMARK 465 LYS A 636 REMARK 465 ASP A 637 REMARK 465 TYR A 638 REMARK 465 ILE A 639 REMARK 465 ASP A 640 REMARK 465 LEU A 641 REMARK 465 ALA A 642 REMARK 465 PHE A 643 REMARK 465 SER A 644 REMARK 465 LYS A 645 REMARK 465 LYS A 646 REMARK 465 LYS A 647 REMARK 465 ALA A 648 REMARK 465 ASP A 649 REMARK 465 ASP A 650 REMARK 465 ARG A 651 REMARK 465 LYS A 652 REMARK 465 GLU A 653 REMARK 465 TRP A 654 REMARK 465 LEU A 655 REMARK 465 ARG A 656 REMARK 465 GLN A 657 REMARK 465 TYR A 658 REMARK 465 GLU A 659 REMARK 465 PRO A 660 REMARK 465 GLY A 661 REMARK 465 THR A 662 REMARK 465 VAL A 663 REMARK 465 LEU A 664 REMARK 465 ASP A 665 REMARK 465 PRO A 666 REMARK 465 THR A 667 REMARK 465 LEU A 668 REMARK 465 LYS A 669 REMARK 465 GLU A 670 REMARK 465 ILE A 671 REMARK 465 PRO A 672 REMARK 465 ILE A 673 REMARK 465 SER A 674 REMARK 465 ASP A 675 REMARK 465 PHE A 676 REMARK 465 ILE A 677 REMARK 465 ASN A 678 REMARK 465 LYS A 679 REMARK 465 GLU A 680 REMARK 465 LEU A 681 REMARK 465 ILE A 682 REMARK 465 GLU A 1078 REMARK 465 GLN A 1079 REMARK 465 ILE A 1080 REMARK 465 ASN A 1081 REMARK 465 ASP A 1082 REMARK 465 VAL A 1083 REMARK 465 LYS A 1084 REMARK 465 GLY A 1085 REMARK 465 ALA A 1086 REMARK 465 THR A 1087 REMARK 465 SER A 1088 REMARK 465 ASP A 1089 REMARK 465 GLU A 1090 REMARK 465 GLU A 1091 REMARK 465 ASP A 1092 REMARK 465 GLU A 1093 REMARK 465 GLU A 1094 REMARK 465 SER A 1095 REMARK 465 SER A 1096 REMARK 465 HIS A 1097 REMARK 465 GLU A 1098 REMARK 465 ASP A 1099 REMARK 465 THR A 1100 REMARK 465 GLU A 1101 REMARK 465 ASN A 1102 REMARK 465 VAL A 1103 REMARK 465 ILE A 1104 REMARK 465 ASN A 1105 REMARK 465 GLY A 1106 REMARK 465 PRO A 1107 REMARK 465 GLY A 1179 REMARK 465 GLY A 1180 REMARK 465 ASN A 1181 REMARK 465 VAL A 1182 REMARK 465 PRO A 1183 REMARK 465 ASN A 1184 REMARK 465 LYS A 1185 REMARK 465 GLY A 1186 REMARK 465 SER A 1187 REMARK 465 LYS A 1188 REMARK 465 THR A 1189 REMARK 465 LYS A 1190 REMARK 465 GLY A 1191 REMARK 465 LYS A 1192 REMARK 465 GLY A 1193 REMARK 465 LYS A 1194 REMARK 465 ARG A 1195 REMARK 465 LYS A 1196 REMARK 465 LEU A 1197 REMARK 465 VAL A 1198 REMARK 465 ASP A 1199 REMARK 465 ASP A 1200 REMARK 465 GLU A 1201 REMARK 465 ASP A 1202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A1071 OG REMARK 470 PRO A1072 CG CD REMARK 470 ASN A1073 CG OD1 ND2 REMARK 470 ASP A1074 CG OD1 OD2 REMARK 470 GLU A1075 CG CD OE1 OE2 REMARK 470 ILE A1076 CG1 CG2 CD1 REMARK 470 ALA A1077 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 705 H1 HOH A 73 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 683 CB LEU A 683 CG 3.856 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 475 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 LEU A 683 CA - CB - CG ANGL. DEV. = -22.6 DEGREES REMARK 500 LEU A 683 CB - CG - CD1 ANGL. DEV. = 62.4 DEGREES REMARK 500 LEU A 683 CB - CG - CD2 ANGL. DEV. = -45.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 438 -167.97 -114.43 REMARK 500 ARG A 476 -154.21 -88.32 REMARK 500 LYS A 478 -114.19 89.37 REMARK 500 MET A 479 -164.68 109.22 REMARK 500 ASN A 481 -163.61 86.94 REMARK 500 GLU A 484 118.72 -164.41 REMARK 500 ALA A 485 -42.87 -146.35 REMARK 500 ALA A 487 -176.28 70.39 REMARK 500 ASP A 488 100.24 149.76 REMARK 500 TYR A 511 -16.84 81.45 REMARK 500 GLU A 512 -153.18 -68.41 REMARK 500 LYS A 515 -34.30 -167.84 REMARK 500 GLN A 528 -50.95 84.83 REMARK 500 ASP A 529 -149.58 -95.29 REMARK 500 ILE A 535 -76.96 -73.43 REMARK 500 SER A 546 -53.71 -121.64 REMARK 500 GLN A 554 -85.72 -13.49 REMARK 500 LYS A 571 -97.82 137.96 REMARK 500 PRO A 572 -37.90 -31.04 REMARK 500 THR A 573 -144.12 -158.62 REMARK 500 ASN A 581 147.08 -174.96 REMARK 500 GLU A 592 -33.49 -137.59 REMARK 500 LYS A 601 83.24 -159.83 REMARK 500 LYS A 604 59.69 161.77 REMARK 500 LEU A 697 -65.01 112.37 REMARK 500 ALA A 734 61.80 33.94 REMARK 500 HIS A 736 59.98 -108.06 REMARK 500 ASN A 752 32.18 -140.62 REMARK 500 SER A 756 -109.24 -101.95 REMARK 500 LEU A 763 110.13 49.03 REMARK 500 ASP A 810 -121.99 52.59 REMARK 500 LYS A 812 -79.43 -125.23 REMARK 500 THR A 813 132.15 108.27 REMARK 500 VAL A 814 -136.49 -116.92 REMARK 500 PRO A 824 90.91 -57.50 REMARK 500 TYR A 841 113.68 -165.86 REMARK 500 ASP A 860 70.26 45.65 REMARK 500 ILE A 880 -70.71 -103.18 REMARK 500 LEU A 883 0.14 90.37 REMARK 500 ASP A 896 96.76 -61.69 REMARK 500 ASN A 897 22.07 84.95 REMARK 500 LEU A 921 -71.76 -91.49 REMARK 500 ASP A 925 -146.57 45.45 REMARK 500 LYS A 926 -75.95 60.21 REMARK 500 LYS A 928 139.72 -39.26 REMARK 500 GLN A 937 47.45 -108.21 REMARK 500 ASP A 939 -115.49 -90.11 REMARK 500 ASN A 941 -149.17 -116.69 REMARK 500 ASN A 975 59.99 -142.85 REMARK 500 HIS A 982 51.41 -115.65 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1BGW A 410 1202 UNP P06786 TOP2_YEAST 409 1201 SEQADV 1BGW LEU A 548 UNP P06786 PRO 547 CONFLICT SEQRES 1 A 793 GLU ASN ALA LEU LYS LYS SER ASP GLY THR ARG LYS SER SEQRES 2 A 793 ARG ILE THR ASN TYR PRO LYS LEU GLU ASP ALA ASN LYS SEQRES 3 A 793 ALA GLY THR LYS GLU GLY TYR LYS CYS THR LEU VAL LEU SEQRES 4 A 793 THR GLU GLY ASP SER ALA LEU SER LEU ALA VAL ALA GLY SEQRES 5 A 793 LEU ALA VAL VAL GLY ARG ASP TYR TYR GLY CYS TYR PRO SEQRES 6 A 793 LEU ARG GLY LYS MET LEU ASN VAL ARG GLU ALA SER ALA SEQRES 7 A 793 ASP GLN ILE LEU LYS ASN ALA GLU ILE GLN ALA ILE LYS SEQRES 8 A 793 LYS ILE MET GLY LEU GLN HIS ARG LYS LYS TYR GLU ASP SEQRES 9 A 793 THR LYS SER LEU ARG TYR GLY HIS LEU MET ILE MET THR SEQRES 10 A 793 ASP GLN ASP HIS ASP GLY SER HIS ILE LYS GLY LEU ILE SEQRES 11 A 793 ILE ASN PHE LEU GLU SER SER PHE LEU GLY LEU LEU ASP SEQRES 12 A 793 ILE GLN GLY PHE LEU LEU GLU PHE ILE THR PRO ILE ILE SEQRES 13 A 793 LYS VAL SER ILE THR LYS PRO THR LYS ASN THR ILE ALA SEQRES 14 A 793 PHE TYR ASN MET PRO ASP TYR GLU LYS TRP ARG GLU GLU SEQRES 15 A 793 GLU SER HIS LYS PHE THR TRP LYS GLN LYS TYR TYR LYS SEQRES 16 A 793 GLY LEU GLY THR SER LEU ALA GLN GLU VAL ARG GLU TYR SEQRES 17 A 793 PHE SER ASN LEU ASP ARG HIS LEU LYS ILE PHE HIS SER SEQRES 18 A 793 LEU GLN GLY ASN ASP LYS ASP TYR ILE ASP LEU ALA PHE SEQRES 19 A 793 SER LYS LYS LYS ALA ASP ASP ARG LYS GLU TRP LEU ARG SEQRES 20 A 793 GLN TYR GLU PRO GLY THR VAL LEU ASP PRO THR LEU LYS SEQRES 21 A 793 GLU ILE PRO ILE SER ASP PHE ILE ASN LYS GLU LEU ILE SEQRES 22 A 793 LEU PHE SER LEU ALA ASP ASN ILE ARG SER ILE PRO ASN SEQRES 23 A 793 VAL LEU ASP GLY PHE LYS PRO GLY GLN ARG LYS VAL LEU SEQRES 24 A 793 TYR GLY CYS PHE LYS LYS ASN LEU LYS SER GLU LEU LYS SEQRES 25 A 793 VAL ALA GLN LEU ALA PRO TYR VAL SER GLU CYS THR ALA SEQRES 26 A 793 TYR HIS HIS GLY GLU GLN SER LEU ALA GLN THR ILE ILE SEQRES 27 A 793 GLY LEU ALA GLN ASN PHE VAL GLY SER ASN ASN ILE TYR SEQRES 28 A 793 LEU LEU LEU PRO ASN GLY ALA PHE GLY THR ARG ALA THR SEQRES 29 A 793 GLY GLY LYS ASP ALA ALA ALA ALA ARG TYR ILE TYR THR SEQRES 30 A 793 GLU LEU ASN LYS LEU THR ARG LYS ILE PHE HIS PRO ALA SEQRES 31 A 793 ASP ASP PRO LEU TYR LYS TYR ILE GLN GLU ASP GLU LYS SEQRES 32 A 793 THR VAL GLU PRO GLU TRP TYR LEU PRO ILE LEU PRO MET SEQRES 33 A 793 ILE LEU VAL ASN GLY ALA GLU GLY ILE GLY THR GLY TRP SEQRES 34 A 793 SER THR TYR ILE PRO PRO PHE ASN PRO LEU GLU ILE ILE SEQRES 35 A 793 LYS ASN ILE ARG HIS LEU MET ASN ASP GLU GLU LEU GLU SEQRES 36 A 793 GLN MET HIS PRO TRP PHE ARG GLY TRP THR GLY THR ILE SEQRES 37 A 793 GLU GLU ILE GLU PRO LEU ARG TYR ARG MET TYR GLY ARG SEQRES 38 A 793 ILE GLU GLN ILE GLY ASP ASN VAL LEU GLU ILE THR GLU SEQRES 39 A 793 LEU PRO ALA ARG THR TRP THR SER THR ILE LYS GLU TYR SEQRES 40 A 793 LEU LEU LEU GLY LEU SER GLY ASN ASP LYS ILE LYS PRO SEQRES 41 A 793 TRP ILE LYS ASP MET GLU GLU GLN HIS ASP ASP ASN ILE SEQRES 42 A 793 LYS PHE ILE ILE THR LEU SER PRO GLU GLU MET ALA LYS SEQRES 43 A 793 THR ARG LYS ILE GLY PHE TYR GLU ARG PHE LYS LEU ILE SEQRES 44 A 793 SER PRO ILE SER LEU MET ASN MET VAL ALA PHE ASP PRO SEQRES 45 A 793 HIS GLY LYS ILE LYS LYS TYR ASN SER VAL ASN GLU ILE SEQRES 46 A 793 LEU SER GLU PHE TYR TYR VAL ARG LEU GLU TYR TYR GLN SEQRES 47 A 793 LYS ARG LYS ASP HIS MET SER GLU ARG LEU GLN TRP GLU SEQRES 48 A 793 VAL GLU LYS TYR SER PHE GLN VAL LYS PHE ILE LYS MET SEQRES 49 A 793 ILE ILE GLU LYS GLU LEU THR VAL THR ASN LYS PRO ARG SEQRES 50 A 793 ASN ALA ILE ILE GLN GLU LEU GLU ASN LEU GLY PHE PRO SEQRES 51 A 793 ARG PHE ASN LYS GLU GLY LYS PRO TYR TYR GLY SER PRO SEQRES 52 A 793 ASN ASP GLU ILE ALA GLU GLN ILE ASN ASP VAL LYS GLY SEQRES 53 A 793 ALA THR SER ASP GLU GLU ASP GLU GLU SER SER HIS GLU SEQRES 54 A 793 ASP THR GLU ASN VAL ILE ASN GLY PRO GLU GLU LEU TYR SEQRES 55 A 793 GLY THR TYR GLU TYR LEU LEU GLY MET ARG ILE TRP SER SEQRES 56 A 793 LEU THR LYS GLU ARG TYR GLN LYS LEU LEU LYS GLN LYS SEQRES 57 A 793 GLN GLU LYS GLU THR GLU LEU GLU ASN LEU LEU LYS LEU SEQRES 58 A 793 SER ALA LYS ASP ILE TRP ASN THR ASP LEU LYS ALA PHE SEQRES 59 A 793 GLU VAL GLY TYR GLN GLU PHE LEU GLN ARG ASP ALA GLU SEQRES 60 A 793 ALA ARG GLY GLY ASN VAL PRO ASN LYS GLY SER LYS THR SEQRES 61 A 793 LYS GLY LYS GLY LYS ARG LYS LEU VAL ASP ASP GLU ASP FORMUL 2 HOH *100(H2 O) HELIX 1 1 GLY A 441 LYS A 443 5 3 HELIX 2 2 GLY A 451 VAL A 465 1 15 HELIX 3 3 ILE A 490 MET A 503 1 14 HELIX 4 4 HIS A 534 SER A 546 1 13 HELIX 5 5 LEU A 548 LEU A 551 1 4 HELIX 6 6 MET A 582 GLU A 591 1 10 HELIX 7 7 SER A 593 LYS A 595 5 3 HELIX 8 8 ALA A 611 PHE A 628 1 18 HELIX 9 9 SER A 685 SER A 692 1 8 HELIX 10 10 PRO A 702 LYS A 713 1 12 HELIX 11 11 VAL A 722 THR A 733 1 12 HELIX 12 12 GLU A 739 ALA A 750 1 12 HELIX 13 13 ARG A 771 THR A 773 5 3 HELIX 14 14 THR A 792 ILE A 795 1 4 HELIX 15 15 PRO A 798 LEU A 803 5 6 HELIX 16 16 MET A 825 ASN A 829 1 5 HELIX 17 17 PRO A 847 ASN A 859 1 13 HELIX 18 18 THR A 910 LEU A 921 1 12 HELIX 19 19 PRO A 950 ILE A 959 1 10 HELIX 20 20 PHE A 961 ARG A 964 1 4 HELIX 21 21 VAL A 991 ILE A 1035 1 45 HELIX 22 22 ARG A 1046 ASN A 1055 1 10 HELIX 23 23 GLU A 1115 LEU A 1118 1 4 HELIX 24 24 ILE A 1122 LEU A 1125 5 4 HELIX 25 25 LYS A 1127 LEU A 1148 1 22 HELIX 26 26 ALA A 1152 GLU A 1176 1 25 SHEET 1 A 4 TYR A 470 LEU A 475 0 SHEET 2 A 4 THR A 445 GLU A 450 1 N THR A 445 O GLY A 471 SHEET 3 A 4 HIS A 521 THR A 526 1 N HIS A 521 O LEU A 446 SHEET 4 A 4 LEU A 557 GLU A 559 1 N LEU A 558 O LEU A 522 SHEET 1 B 3 LYS A 574 PHE A 579 0 SHEET 2 B 3 ILE A 565 THR A 570 -1 N ILE A 569 O ASN A 575 SHEET 3 B 3 TRP A 598 TYR A 602 -1 N LYS A 601 O LYS A 566 SHEET 1 C 2 ALA A 831 ILE A 834 0 SHEET 2 C 2 SER A 839 ILE A 842 -1 N ILE A 842 O ALA A 831 SHEET 1 D 3 THR A 876 GLU A 879 0 SHEET 2 D 3 ARG A 884 TYR A 888 -1 N TYR A 888 O THR A 876 SHEET 3 D 3 ILE A 968 SER A 972 -1 N ILE A 971 O TYR A 885 SHEET 1 E 4 ASP A 933 GLU A 936 0 SHEET 2 E 4 PHE A 944 THR A 947 -1 N THR A 947 O ASP A 933 SHEET 3 E 4 VAL A 898 GLU A 903 -1 N ILE A 901 O PHE A 944 SHEET 4 E 4 ARG A 890 GLN A 893 -1 N GLU A 892 O GLU A 900 SHEET 1 F 2 VAL A 977 PHE A 979 0 SHEET 2 F 2 ILE A 985 LYS A 987 -1 N LYS A 986 O ALA A 978 CRYST1 154.100 154.100 127.500 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006489 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007843 0.00000