HEADER CELL ADHESION 10-JUN-98 1BHQ TITLE MAC-1 I DOMAIN CADMIUM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD11B; COMPND 3 CHAIN: 1, 2; COMPND 4 FRAGMENT: MAC-1 ALPHA DOMAIN; COMPND 5 SYNONYM: CELL SURFACE GLYCOPROTEIN MAC-1 ALPHA SUBUNIT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3C; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BL21 KEYWDS CELL ADHESION, INTEGRIN, I DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR E.T.BALDWIN REVDAT 6 02-AUG-23 1BHQ 1 REMARK LINK REVDAT 5 07-MAR-18 1BHQ 1 REMARK REVDAT 4 24-FEB-09 1BHQ 1 VERSN REVDAT 3 01-APR-03 1BHQ 1 JRNL REVDAT 2 18-NOV-98 1BHQ 3 ATOM HET SOURCE COMPND REVDAT 2 2 3 REMARK HETATM JRNL KEYWDS REVDAT 2 3 3 HEADER TER CONECT LINK REVDAT 1 04-NOV-98 1BHQ 0 JRNL AUTH E.T.BALDWIN,R.W.SARVER,G.L.BRYANT JR.,K.A.CURRY, JRNL AUTH 2 M.B.FAIRBANKS,B.C.FINZEL,R.L.GARLICK,R.L.HEINRIKSON, JRNL AUTH 3 N.C.HORTON,L.L.KELLEY,A.M.MILDNER,J.B.MOON,J.E.MOTT, JRNL AUTH 4 V.T.MUTCHLER,C.S.TOMICH,K.D.WATENPAUGH,V.H.WILEY JRNL TITL CATION BINDING TO THE INTEGRIN CD11B I DOMAIN AND ACTIVATION JRNL TITL 2 MODEL ASSESSMENT JRNL REF STRUCTURE V. 6 923 1998 JRNL REFN ISSN 0969-2126 JRNL PMID 9687375 JRNL DOI 10.1016/S0969-2126(98)00093-8 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 43.9 REMARK 3 NUMBER OF REFLECTIONS : 8618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; 0.030 REMARK 3 ANGLE DISTANCE (A) : 0.036 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.034 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.013 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.201 ; 0.200 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.197 ; 0.400 REMARK 3 MULTIPLE TORSION (A) : 0.259 ; 0.400 REMARK 3 H-BOND (X...Y) (A) : 0.256 ; 0.400 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.200 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 9.100 ; 5.000 REMARK 3 TRANSVERSE (DEGREES) : 21.000; 10.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.552 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.964 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.796 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.341 ; 4.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PARAMETERS FROM SIELECKI ET AL. JMB REMARK 3 134, 781-804 1979 REMARK 4 REMARK 4 1BHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-94 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 5.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : SIEMENS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : XENGEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 43.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS TO KNOWN PDB REMARK 200 ENTRY 1IDN REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: CD11B I DOMAIN METAL FREE PDB ENTRY 1IDN REMARK 200 REMARK 200 REMARK: DATA WERE COLLECTED BY OSCILLATION WITH 0.25 DEGREE FRAME REMARK 200 WIDTHS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY VAPOR DIFFUSION REMARK 280 ON SITTING DROP BRIDGES. THE WELL MIX OF 20-24% PEG6000 BUFFERED REMARK 280 WITH 100 MM NA ACETATE PH 5.0 WAS MIXED 1:1 WITH 3 UL OF I REMARK 280 DOMAIN PROTEIN (20-30 MG/ML, 50 MM HEPES PH 7.0, 0.025% NA AZIDE) REMARK 280 . CRYSTALS WERE STABLIZED IN 10MM CDCL2, 100 MM NA ACETATE 5.0, REMARK 280 26% PEG6000 FOR DATA COLLECTION., VAPOR DIFFUSION - SITTING DROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.21000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.21000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU 1 320 O HOH 1 1 1.81 REMARK 500 NH1 ARG 1 196 O HOH 1 57 1.86 REMARK 500 O SER 2 467 O HOH 2 29 1.86 REMARK 500 OD1 ASN 2 610 O HOH 2 42 2.04 REMARK 500 CD2 HIS 2 510 O HOH 2 26 2.09 REMARK 500 O ASP 1 294 NZ LYS 1 315 2.15 REMARK 500 OH TYR 1 252 OE2 GLU 1 283 2.18 REMARK 500 OG SER 2 444 OD2 ASP 2 542 2.18 REMARK 500 OG SER 2 589 O HOH 2 23 2.19 REMARK 500 O HOH 1 54 O HOH 1 804 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH 1 25 O HOH 1 826 4555 0.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP 1 134 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG 1 151 NH1 - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG 1 151 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG 1 151 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG 1 152 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLN 1 175 N - CA - CB ANGL. DEV. = 15.2 DEGREES REMARK 500 GLU 1 179 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU 1 179 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 ASN 1 192 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 LYS 1 200 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG 1 208 CA - CB - CG ANGL. DEV. = 25.2 DEGREES REMARK 500 ARG 1 216 CD - NE - CZ ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG 1 216 NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG 1 216 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG 1 220 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS 1 235 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 LYS 1 235 CB - CG - CD ANGL. DEV. = 17.9 DEGREES REMARK 500 ASP 1 242 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP 1 248 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 GLU 1 253 CA - CB - CG ANGL. DEV. = 20.0 DEGREES REMARK 500 ARG 1 261 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 TYR 1 267 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR 1 267 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG 1 276 CD - NE - CZ ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG 1 276 NE - CZ - NH1 ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG 1 276 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG 1 281 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG 1 293 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG 1 293 CG - CD - NE ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG 1 293 CD - NE - CZ ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG 1 293 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG 1 293 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 VAL 1 299 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 LYS 1 315 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 LYS 1 315 CB - CG - CD ANGL. DEV. = 25.6 DEGREES REMARK 500 PHE 1 317 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 PRO 2 447 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP 2 449 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG 2 451 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LYS 2 465 CB - CG - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 MET 2 474 N - CA - CB ANGL. DEV. = 14.0 DEGREES REMARK 500 GLU 2 478 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 GLU 2 479 CG - CD - OE1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG 2 481 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG 2 496 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG 2 508 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG 2 520 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG 2 520 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 GLU 2 521 N - CA - CB ANGL. DEV. = 11.7 DEGREES REMARK 500 GLU 2 521 CA - CB - CG ANGL. DEV. = 29.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 62 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER 1 142 161.87 -49.26 REMARK 500 GLN 1 163 -18.73 -48.40 REMARK 500 SER 1 177 -99.64 -155.95 REMARK 500 ASN 1 192 77.46 -158.13 REMARK 500 PRO 1 193 42.51 -64.54 REMARK 500 PRO 1 195 -70.60 -37.41 REMARK 500 ARG 1 208 -161.04 -123.97 REMARK 500 HIS 1 210 69.57 -108.73 REMARK 500 PHE 1 223 39.10 -82.77 REMARK 500 PHE 1 275 51.97 -102.68 REMARK 500 GLU 1 278 13.57 -55.41 REMARK 500 LYS 1 279 -58.78 -124.11 REMARK 500 LEU 1 305 -34.67 -35.82 REMARK 500 GLU 1 320 -56.06 -129.69 REMARK 500 PRO 2 447 -44.44 -19.96 REMARK 500 LYS 2 465 92.52 -64.66 REMARK 500 LYS 2 466 -125.13 -78.50 REMARK 500 SER 2 477 -92.48 -161.69 REMARK 500 PHE 2 484 148.76 177.97 REMARK 500 ASN 2 492 62.99 154.39 REMARK 500 LEU 2 506 -40.75 63.14 REMARK 500 ARG 2 508 -162.22 -105.49 REMARK 500 HIS 2 510 42.23 -106.91 REMARK 500 PHE 2 523 33.88 -79.80 REMARK 500 ALA 2 529 132.21 -37.85 REMARK 500 PHE 2 575 30.93 -88.60 REMARK 500 LYS 2 579 -23.63 -148.57 REMARK 500 ALA 2 604 16.52 -57.85 REMARK 500 GLN 2 611 -78.58 -56.14 REMARK 500 LEU 2 612 -33.24 -35.16 REMARK 500 ILE 2 619 39.32 -98.72 REMARK 500 GLU 2 620 -18.97 -173.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG 2 593 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD 1 901 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH 1 24 O REMARK 620 2 SER 1 142 OG 98.2 REMARK 620 3 SER 1 144 OG 81.7 104.8 REMARK 620 4 ASP 1 242 OD2 129.7 113.3 53.6 REMARK 620 5 ASP 1 242 OD1 171.6 81.3 90.3 44.5 REMARK 620 6 HOH 1 907 O 112.9 88.6 158.9 106.4 75.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD 2 811 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH 1 53 O REMARK 620 2 HOH 1 54 O 89.1 REMARK 620 3 ASP 1 149 OD2 134.7 136.2 REMARK 620 4 ASP 1 149 OD1 76.7 164.0 58.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD 2 702 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH 2 18 O REMARK 620 2 SER 2 442 OG 110.2 REMARK 620 3 SER 2 444 OG 75.8 77.3 REMARK 620 4 ASP 2 542 OD2 133.7 90.5 68.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD 1 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD 2 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD 2 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE 1 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE 2 432 DBREF 1BHQ 1 133 321 UNP P11215 ITAM_HUMAN 149 337 DBREF 1BHQ 2 433 621 UNP P11215 ITAM_HUMAN 149 337 SEQRES 1 1 189 SER ASP ILE ALA PHE LEU ILE ASP GLY SER GLY SER ILE SEQRES 2 1 189 ILE PRO HIS ASP PHE ARG ARG MET LYS GLU PHE VAL SER SEQRES 3 1 189 THR VAL MET GLU GLN LEU LYS LYS SER LYS THR LEU PHE SEQRES 4 1 189 SER LEU MET GLN TYR SER GLU GLU PHE ARG ILE HIS PHE SEQRES 5 1 189 THR PHE LYS GLU PHE GLN ASN ASN PRO ASN PRO ARG SER SEQRES 6 1 189 LEU VAL LYS PRO ILE THR GLN LEU LEU GLY ARG THR HIS SEQRES 7 1 189 THR ALA THR GLY ILE ARG LYS VAL VAL ARG GLU LEU PHE SEQRES 8 1 189 ASN ILE THR ASN GLY ALA ARG LYS ASN ALA PHE LYS ILE SEQRES 9 1 189 LEU VAL VAL ILE THR ASP GLY GLU LYS PHE GLY ASP PRO SEQRES 10 1 189 LEU GLY TYR GLU ASP VAL ILE PRO GLU ALA ASP ARG GLU SEQRES 11 1 189 GLY VAL ILE ARG TYR VAL ILE GLY VAL GLY ASP ALA PHE SEQRES 12 1 189 ARG SER GLU LYS SER ARG GLN GLU LEU ASN THR ILE ALA SEQRES 13 1 189 SER LYS PRO PRO ARG ASP HIS VAL PHE GLN VAL ASN ASN SEQRES 14 1 189 PHE GLU ALA LEU LYS THR ILE GLN ASN GLN LEU ARG GLU SEQRES 15 1 189 LYS ILE PHE ALA ILE GLU GLY SEQRES 1 2 189 SER ASP ILE ALA PHE LEU ILE ASP GLY SER GLY SER ILE SEQRES 2 2 189 ILE PRO HIS ASP PHE ARG ARG MET LYS GLU PHE VAL SER SEQRES 3 2 189 THR VAL MET GLU GLN LEU LYS LYS SER LYS THR LEU PHE SEQRES 4 2 189 SER LEU MET GLN TYR SER GLU GLU PHE ARG ILE HIS PHE SEQRES 5 2 189 THR PHE LYS GLU PHE GLN ASN ASN PRO ASN PRO ARG SER SEQRES 6 2 189 LEU VAL LYS PRO ILE THR GLN LEU LEU GLY ARG THR HIS SEQRES 7 2 189 THR ALA THR GLY ILE ARG LYS VAL VAL ARG GLU LEU PHE SEQRES 8 2 189 ASN ILE THR ASN GLY ALA ARG LYS ASN ALA PHE LYS ILE SEQRES 9 2 189 LEU VAL VAL ILE THR ASP GLY GLU LYS PHE GLY ASP PRO SEQRES 10 2 189 LEU GLY TYR GLU ASP VAL ILE PRO GLU ALA ASP ARG GLU SEQRES 11 2 189 GLY VAL ILE ARG TYR VAL ILE GLY VAL GLY ASP ALA PHE SEQRES 12 2 189 ARG SER GLU LYS SER ARG GLN GLU LEU ASN THR ILE ALA SEQRES 13 2 189 SER LYS PRO PRO ARG ASP HIS VAL PHE GLN VAL ASN ASN SEQRES 14 2 189 PHE GLU ALA LEU LYS THR ILE GLN ASN GLN LEU ARG GLU SEQRES 15 2 189 LYS ILE PHE ALA ILE GLU GLY HET CD 1 901 1 HET ACE 1 132 3 HET CD 2 702 1 HET CD 2 811 1 HET ACE 2 432 3 HETNAM CD CADMIUM ION HETNAM ACE ACETYL GROUP FORMUL 3 CD 3(CD 2+) FORMUL 4 ACE 2(C2 H4 O) FORMUL 8 HOH *137(H2 O) HELIX 1 1 PRO 1 147 GLN 1 163 1 17 HELIX 2 2 PHE 1 186 ASN 1 191 1 6 HELIX 3 3 PRO 1 195 LYS 1 200 1 6 HELIX 4 4 THR 1 211 GLU 1 221 1 11 HELIX 5 5 ILE 1 225 ASN 1 227 5 3 HELIX 6 6 ILE 1 256 ARG 1 261 1 6 HELIX 7 7 ASP 1 273 PHE 1 275 5 3 HELIX 8 8 ARG 1 281 ILE 1 287 1 7 HELIX 9 9 PRO 1 292 HIS 1 295 1 4 HELIX 10 10 LEU 1 305 LYS 1 315 5 11 HELIX 11 11 ASP 2 449 LEU 2 464 1 16 HELIX 12 12 PHE 2 486 ASN 2 491 1 6 HELIX 13 13 PRO 2 495 LYS 2 500 1 6 HELIX 14 14 THR 2 511 GLU 2 521 1 11 HELIX 15 15 ILE 2 525 ASN 2 527 5 3 HELIX 16 16 TYR 2 552 GLU 2 562 1 11 HELIX 17 17 ASP 2 573 ARG 2 576 5 4 HELIX 18 18 SER 2 580 ILE 2 587 1 8 HELIX 19 19 PRO 2 592 ASP 2 594 5 3 HELIX 20 20 GLU 2 603 ALA 2 618 5 16 SHEET 1 A 6 VAL 1 296 VAL 1 299 0 SHEET 2 A 6 VAL 1 264 VAL 1 271 1 N VAL 1 268 O PHE 1 297 SHEET 3 A 6 LYS 1 235 THR 1 241 1 N LYS 1 235 O ILE 1 265 SHEET 4 A 6 ASP 1 134 ASP 1 140 1 N ASP 1 134 O ILE 1 236 SHEET 5 A 6 LEU 1 170 TYR 1 176 1 N LEU 1 170 O ILE 1 135 SHEET 6 A 6 PHE 1 180 PHE 1 184 -1 N PHE 1 184 O LEU 1 173 SHEET 1 B 5 LEU 2 470 TYR 2 476 0 SHEET 2 B 5 ASP 2 434 ASP 2 440 1 N ILE 2 435 O LEU 2 470 SHEET 3 B 5 LYS 2 535 THR 2 541 1 N ILE 2 536 O ASP 2 434 SHEET 4 B 5 VAL 2 564 VAL 2 571 1 N ILE 2 565 O LYS 2 535 SHEET 5 B 5 VAL 2 596 VAL 2 599 1 N PHE 2 597 O VAL 2 568 LINK C ACE 1 132 N SER 1 133 1555 1555 1.35 LINK C ACE 2 432 N SER 2 433 1555 1555 1.35 LINK O HOH 1 24 CD CD 1 901 1555 1555 2.81 LINK O HOH 1 53 CD CD 2 811 1555 1555 2.56 LINK O HOH 1 54 CD CD 2 811 1555 1555 2.08 LINK OG SER 1 142 CD CD 1 901 1555 1555 2.33 LINK OG SER 1 144 CD CD 1 901 1555 1555 2.63 LINK OD2 ASP 1 149 CD CD 2 811 1555 1555 2.37 LINK OD1 ASP 1 149 CD CD 2 811 1555 1555 2.22 LINK OD2 ASP 1 242 CD CD 1 901 1555 1555 3.05 LINK OD1 ASP 1 242 CD CD 1 901 1555 1555 2.55 LINK CD CD 1 901 O HOH 1 907 1555 1555 2.52 LINK O HOH 2 18 CD CD 2 702 1555 1555 2.94 LINK OG SER 2 442 CD CD 2 702 1555 1555 2.24 LINK OG SER 2 444 CD CD 2 702 1555 1555 1.99 LINK OD2 ASP 2 542 CD CD 2 702 1555 1555 1.86 CISPEP 1 LYS 1 290 PRO 1 291 0 0.82 CISPEP 2 LYS 2 590 PRO 2 591 0 -1.21 SITE 1 AC1 5 HOH 1 24 SER 1 142 SER 1 144 ASP 1 242 SITE 2 AC1 5 HOH 1 907 SITE 1 AC2 4 HOH 2 18 SER 2 442 SER 2 444 ASP 2 542 SITE 1 AC3 3 HOH 1 53 HOH 1 54 ASP 1 149 SITE 1 AC4 4 SER 1 133 LYS 1 168 ARG 1 230 GLU 1 320 SITE 1 AC5 4 SER 2 433 ALA 2 533 PHE 2 534 GLU 2 620 CRYST1 48.420 122.390 75.360 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013270 0.00000 MTRIX1 1 -0.962100 0.272100 0.006800 -0.03410 1 MTRIX2 1 0.272700 0.962100 0.001600 -0.06140 1 MTRIX3 1 -0.006500 0.002100 -0.999900 43.64800 1