data_1BJ6 # _entry.id 1BJ6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BJ6 pdb_00001bj6 10.2210/pdb1bj6/pdb WWPDB D_1000171818 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BJ6 _pdbx_database_status.recvd_initial_deposition_date 1998-07-03 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Demene, H.' 1 'Morellet, N.' 2 'Teilleux, V.' 3 'Huynh-Dinh, T.' 4 'De Rocquigny, H.' 5 'Fournie-Zaluski, M.C.' 6 'Roques, B.P.' 7 # _citation.id primary _citation.title 'Structure of the complex between the HIV-1 nucleocapsid protein NCp7 and the single-stranded pentanucleotide d(ACGCC).' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 283 _citation.page_first 419 _citation.page_last 434 _citation.year 1998 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9769215 _citation.pdbx_database_id_DOI 10.1006/jmbi.1998.2098 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morellet, N.' 1 ? primary 'Demene, H.' 2 ? primary 'Teilleux, V.' 3 ? primary 'Huynh-Dinh, T.' 4 ? primary 'de Rocquigny, H.' 5 ? primary 'Fournie-Zaluski, M.C.' 6 ? primary 'Roques, B.P.' 7 ? # _cell.entry_id 1BJ6 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BJ6 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*CP*GP*CP*C)-3') ; 1465.001 1 ? ? ? ? 2 polymer man 'NUCLEOCAPSID PROTEIN 7' 4837.642 1 ? ? 'RESIDUES 12-53' ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name '(12-53)NCP7' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DC)(DC)' ACGCC D ? 2 'polypeptide(L)' no no NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DC n 1 5 DC n 2 1 ASN n 2 2 VAL n 2 3 LYS n 2 4 CYS n 2 5 PHE n 2 6 ASN n 2 7 CYS n 2 8 GLY n 2 9 LYS n 2 10 GLU n 2 11 GLY n 2 12 HIS n 2 13 THR n 2 14 ALA n 2 15 ARG n 2 16 ASN n 2 17 CYS n 2 18 ARG n 2 19 ALA n 2 20 PRO n 2 21 ARG n 2 22 LYS n 2 23 LYS n 2 24 GLY n 2 25 CYS n 2 26 TRP n 2 27 LYS n 2 28 CYS n 2 29 GLY n 2 30 LYS n 2 31 GLU n 2 32 GLY n 2 33 HIS n 2 34 GLN n 2 35 MET n 2 36 LYS n 2 37 ASP n 2 38 CYS n 2 39 THR n 2 40 GLU n 2 41 ARG n 2 42 GLN n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MAL _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP Q74084_9HIV1 Q74084 2 390 ? ? 2 PDB 1BJ6 1BJ6 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BJ6 A 2 ? 42 ? Q74084 390 ? 430 ? 13 53 2 2 1BJ6 D 1 ? 5 ? 1BJ6 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 3 1 DQF 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 'LOW SALT CONDITIONS' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents WATER # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AMX600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1BJ6 _pdbx_nmr_refine.method 'DYNAMICAL SIMULATED ANNEALING' _pdbx_nmr_refine.details ;THE PROTEIN PART OF THE STRUCTURE WAS FIRST GENERATED USING A RESTRAINTED DYNAMICAL ANNEALING CALCULATION. THE D(ACGCC) NUCLEIC ACID UNDER A DNA CONFORMATION WAS DOCKED APPROXIMATIVELY TO THE PROTEIN BASED ON THE 28 INTERMOLECULAR NOES. THE DOCKED STRUCTURE WAS ENERGY-MINIMIZED UNDER NOES RESTRAINTS. THIS INITIAL COMPLEXED STRUCTURE WAS THEN USED FOR A SECOND SET OF SIMULATED ANNEALING CALCULATION. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1BJ6 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION AND LOWEST TOTAL ENERGY' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement Discover ? BIOSYM 1 'structure solution' 'BRUKER DISNMR' DISNMR ? 2 'structure solution' BIOSYM/MSI ? ? 3 # _exptl.entry_id 1BJ6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1BJ6 _struct.title '1H NMR OF (12-53) NCP7/D(ACGCC) COMPLEX, 10 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BJ6 _struct_keywords.pdbx_keywords 'Viral protein/DNA' _struct_keywords.text 'COMPLEX (NUCLEOCAPSID PROTEIN-DNA), NUCLEIC ACID, RETROVIRUS, VIRUS MORPHOGENESIS, ZINC FINGER, Viral protein-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B CYS 4 SG ? ? ? 1_555 C ZN . ZN ? H A CYS 15 A ZN 54 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc2 metalc ? ? B CYS 7 SG ? ? ? 1_555 C ZN . ZN ? H A CYS 18 A ZN 54 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc3 metalc ? ? B HIS 12 NE2 ? ? ? 1_555 C ZN . ZN ? H A HIS 23 A ZN 54 1_555 ? ? ? ? ? ? ? 2.037 ? ? metalc4 metalc ? ? B CYS 17 SG ? ? ? 1_555 C ZN . ZN ? H A CYS 28 A ZN 54 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc5 metalc ? ? B CYS 25 SG ? ? ? 1_555 D ZN . ZN ? H A CYS 36 A ZN 55 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc6 metalc ? ? B CYS 28 SG ? ? ? 1_555 D ZN . ZN ? H A CYS 39 A ZN 55 1_555 ? ? ? ? ? ? ? 2.266 ? ? metalc7 metalc ? ? B HIS 33 NE2 ? ? ? 1_555 D ZN . ZN ? H A HIS 44 A ZN 55 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc8 metalc ? ? B CYS 38 SG ? ? ? 1_555 D ZN . ZN ? H A CYS 49 A ZN 55 1_555 ? ? ? ? ? ? ? 2.267 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details ZNB Unknown ? ? ? ? 7 'ZINC-BINDING SITES.' AC1 Software A ZN 54 H 4 'BINDING SITE FOR RESIDUE ZN A 54H' AC2 Software A ZN 55 H 4 'BINDING SITE FOR RESIDUE ZN A 55H' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 ZNB 7 CYS B 4 ? CYS A 15 . ? 1_555 ? 2 ZNB 7 CYS B 7 ? CYS A 18 . ? 1_555 ? 3 ZNB 7 HIS B 12 ? HIS A 23 . ? 1_555 ? 4 ZNB 7 CYS B 17 ? CYS A 28 . ? 1_555 ? 5 ZNB 7 CYS B 25 ? CYS A 36 . ? 1_555 ? 6 ZNB 7 CYS B 28 ? CYS A 39 . ? 1_555 ? 7 ZNB 7 HIS B 33 ? HIS A 44 . ? 1_555 ? 8 AC1 4 CYS B 4 ? CYS A 15 . ? 1_555 ? 9 AC1 4 CYS B 7 ? CYS A 18 . ? 1_555 ? 10 AC1 4 HIS B 12 ? HIS A 23 . ? 1_555 ? 11 AC1 4 CYS B 17 ? CYS A 28 . ? 1_555 ? 12 AC2 4 CYS B 25 ? CYS A 36 . ? 1_555 ? 13 AC2 4 CYS B 28 ? CYS A 39 . ? 1_555 ? 14 AC2 4 HIS B 33 ? HIS A 44 . ? 1_555 ? 15 AC2 4 CYS B 38 ? CYS A 49 . ? 1_555 ? # _database_PDB_matrix.entry_id 1BJ6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BJ6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A D . n A 1 2 DC 2 2 2 DC C D . n A 1 3 DG 3 3 3 DG G D . n A 1 4 DC 4 4 4 DC C D . n A 1 5 DC 5 5 5 DC C D . n B 2 1 ASN 1 12 12 ASN ASN A . n B 2 2 VAL 2 13 13 VAL VAL A . n B 2 3 LYS 3 14 14 LYS LYS A . n B 2 4 CYS 4 15 15 CYS CYS A . n B 2 5 PHE 5 16 16 PHE PHE A . n B 2 6 ASN 6 17 17 ASN ASN A . n B 2 7 CYS 7 18 18 CYS CYS A . n B 2 8 GLY 8 19 19 GLY GLY A . n B 2 9 LYS 9 20 20 LYS LYS A . n B 2 10 GLU 10 21 21 GLU GLU A . n B 2 11 GLY 11 22 22 GLY GLY A . n B 2 12 HIS 12 23 23 HIS HIS A . n B 2 13 THR 13 24 24 THR THR A . n B 2 14 ALA 14 25 25 ALA ALA A . n B 2 15 ARG 15 26 26 ARG ARG A . n B 2 16 ASN 16 27 27 ASN ASN A . n B 2 17 CYS 17 28 28 CYS CYS A . n B 2 18 ARG 18 29 29 ARG ARG A . n B 2 19 ALA 19 30 30 ALA ALA A . n B 2 20 PRO 20 31 31 PRO PRO A . n B 2 21 ARG 21 32 32 ARG ARG A . n B 2 22 LYS 22 33 33 LYS LYS A . n B 2 23 LYS 23 34 34 LYS LYS A . n B 2 24 GLY 24 35 35 GLY GLY A . n B 2 25 CYS 25 36 36 CYS CYS A . n B 2 26 TRP 26 37 37 TRP TRP A . n B 2 27 LYS 27 38 38 LYS LYS A . n B 2 28 CYS 28 39 39 CYS CYS A . n B 2 29 GLY 29 40 40 GLY GLY A . n B 2 30 LYS 30 41 41 LYS LYS A . n B 2 31 GLU 31 42 42 GLU GLU A . n B 2 32 GLY 32 43 43 GLY GLY A . n B 2 33 HIS 33 44 44 HIS HIS A . n B 2 34 GLN 34 45 45 GLN GLN A . n B 2 35 MET 35 46 46 MET MET A . n B 2 36 LYS 36 47 47 LYS LYS A . n B 2 37 ASP 37 48 48 ASP ASP A . n B 2 38 CYS 38 49 49 CYS CYS A . n B 2 39 THR 39 50 50 THR THR A . n B 2 40 GLU 40 51 51 GLU GLU A . n B 2 41 ARG 41 52 52 ARG ARG A . n B 2 42 GLN 42 53 53 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 54 54 ZN ZN A H D 3 ZN 1 55 55 ZN ZN A H # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? B CYS 4 ? A CYS 15 ? 1_555 ZN ? C ZN . ? A ZN 54 H 1_555 SG ? B CYS 7 ? A CYS 18 ? 1_555 114.9 ? 2 SG ? B CYS 4 ? A CYS 15 ? 1_555 ZN ? C ZN . ? A ZN 54 H 1_555 NE2 ? B HIS 12 ? A HIS 23 ? 1_555 105.4 ? 3 SG ? B CYS 7 ? A CYS 18 ? 1_555 ZN ? C ZN . ? A ZN 54 H 1_555 NE2 ? B HIS 12 ? A HIS 23 ? 1_555 109.4 ? 4 SG ? B CYS 4 ? A CYS 15 ? 1_555 ZN ? C ZN . ? A ZN 54 H 1_555 SG ? B CYS 17 ? A CYS 28 ? 1_555 109.9 ? 5 SG ? B CYS 7 ? A CYS 18 ? 1_555 ZN ? C ZN . ? A ZN 54 H 1_555 SG ? B CYS 17 ? A CYS 28 ? 1_555 107.9 ? 6 NE2 ? B HIS 12 ? A HIS 23 ? 1_555 ZN ? C ZN . ? A ZN 54 H 1_555 SG ? B CYS 17 ? A CYS 28 ? 1_555 109.2 ? 7 SG ? B CYS 25 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 55 H 1_555 SG ? B CYS 28 ? A CYS 39 ? 1_555 113.9 ? 8 SG ? B CYS 25 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 55 H 1_555 NE2 ? B HIS 33 ? A HIS 44 ? 1_555 106.0 ? 9 SG ? B CYS 28 ? A CYS 39 ? 1_555 ZN ? D ZN . ? A ZN 55 H 1_555 NE2 ? B HIS 33 ? A HIS 44 ? 1_555 108.0 ? 10 SG ? B CYS 25 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 55 H 1_555 SG ? B CYS 38 ? A CYS 49 ? 1_555 106.8 ? 11 SG ? B CYS 28 ? A CYS 39 ? 1_555 ZN ? D ZN . ? A ZN 55 H 1_555 SG ? B CYS 38 ? A CYS 49 ? 1_555 112.4 ? 12 NE2 ? B HIS 33 ? A HIS 44 ? 1_555 ZN ? D ZN . ? A ZN 55 H 1_555 SG ? B CYS 38 ? A CYS 49 ? 1_555 109.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-02-02 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 6 4 'Structure model' '_struct_conn.pdbx_ptnr2_PDB_ins_code' 7 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_ins_code' 22 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 D DC 2 ? ? C2 D DC 2 ? ? O2 D DC 2 ? ? 122.76 118.90 3.86 0.60 N 2 1 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 111.08 108.30 2.78 0.30 N 3 2 "C4'" D DA 1 ? ? "C3'" D DA 1 ? ? "C2'" D DA 1 ? ? 97.12 102.20 -5.08 0.70 N 4 2 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 111.39 108.30 3.09 0.30 N 5 2 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 111.38 108.30 3.08 0.30 N 6 3 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.95 108.30 2.65 0.30 N 7 3 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 111.67 108.30 3.37 0.30 N 8 3 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 110.93 108.30 2.63 0.30 N 9 4 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 112.00 108.30 3.70 0.30 N 10 4 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 111.96 108.30 3.66 0.30 N 11 4 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 112.67 108.30 4.37 0.30 N 12 4 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 111.37 108.30 3.07 0.30 N 13 5 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 112.07 108.30 3.77 0.30 N 14 6 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.60 108.30 2.30 0.30 N 15 6 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 112.84 108.30 4.54 0.30 N 16 6 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 112.18 108.30 3.88 0.30 N 17 7 "C4'" D DA 1 ? ? "C3'" D DA 1 ? ? "C2'" D DA 1 ? ? 97.86 102.20 -4.34 0.70 N 18 7 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 112.59 108.30 4.29 0.30 N 19 7 N1 D DC 2 ? ? C2 D DC 2 ? ? O2 D DC 2 ? ? 122.91 118.90 4.01 0.60 N 20 7 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 110.77 108.30 2.47 0.30 N 21 7 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 110.60 108.30 2.30 0.30 N 22 8 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 114.25 108.30 5.95 0.30 N 23 8 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 112.83 108.30 4.53 0.30 N 24 8 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 112.10 108.30 3.80 0.30 N 25 8 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 110.71 108.30 2.41 0.30 N 26 9 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 112.26 108.30 3.96 0.30 N 27 9 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 112.72 108.30 4.42 0.30 N 28 9 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 111.75 108.30 3.45 0.30 N 29 10 "C4'" D DA 1 ? ? "C3'" D DA 1 ? ? "C2'" D DA 1 ? ? 97.58 102.20 -4.62 0.70 N 30 10 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 112.20 108.30 3.90 0.30 N 31 10 "O4'" D DC 4 ? ? "C1'" D DC 4 ? ? N1 D DC 4 ? ? 110.49 108.30 2.19 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 17 ? ? -143.86 -85.72 2 1 THR A 50 ? ? -161.23 28.65 3 2 CYS A 15 ? ? -33.96 117.55 4 2 ASN A 17 ? ? -82.29 -88.64 5 2 THR A 50 ? ? -172.92 40.68 6 2 GLU A 51 ? ? -14.51 -81.19 7 3 LYS A 14 ? ? -163.23 67.84 8 3 CYS A 15 ? ? -0.79 111.70 9 3 ASN A 17 ? ? -155.66 -64.58 10 3 HIS A 44 ? ? -160.04 -161.19 11 3 THR A 50 ? ? -179.33 37.32 12 3 GLU A 51 ? ? -17.62 -78.97 13 3 ARG A 52 ? ? 29.50 40.55 14 4 ASN A 17 ? ? -75.05 -77.67 15 4 LYS A 38 ? ? -56.19 -76.43 16 4 THR A 50 ? ? -165.18 29.80 17 4 ARG A 52 ? ? 25.12 67.85 18 5 VAL A 13 ? ? -139.07 -57.21 19 5 LYS A 14 ? ? 76.92 105.20 20 5 PHE A 16 ? ? -79.62 48.99 21 5 ASN A 17 ? ? -151.54 -74.27 22 5 LYS A 38 ? ? -56.15 -71.83 23 5 HIS A 44 ? ? -103.60 -160.84 24 5 THR A 50 ? ? -177.15 36.22 25 5 GLU A 51 ? ? -22.36 -76.29 26 5 ARG A 52 ? ? 56.40 74.27 27 6 CYS A 15 ? ? -28.88 121.74 28 6 PHE A 16 ? ? -83.92 49.25 29 6 ASN A 17 ? ? -152.33 -77.47 30 6 HIS A 44 ? ? -97.03 -148.58 31 6 THR A 50 ? ? -160.90 38.04 32 6 ARG A 52 ? ? -66.60 -152.65 33 7 PHE A 16 ? ? -91.44 39.21 34 7 ASN A 17 ? ? -148.06 -75.41 35 7 THR A 50 ? ? -152.14 25.47 36 7 GLU A 51 ? ? -91.45 -120.10 37 7 ARG A 52 ? ? 156.21 134.69 38 8 ASN A 17 ? ? -149.44 -80.14 39 8 THR A 50 ? ? -177.99 36.70 40 8 GLU A 51 ? ? -7.06 -80.12 41 9 CYS A 15 ? ? -34.95 124.00 42 9 ASN A 17 ? ? -154.88 -83.80 43 9 THR A 50 ? ? -141.97 19.07 44 9 ARG A 52 ? ? -163.77 85.87 45 10 CYS A 15 ? ? -21.44 114.95 46 10 ASN A 17 ? ? -151.95 -73.79 47 10 LYS A 38 ? ? -57.14 -74.14 48 10 HIS A 44 ? ? -116.76 -162.78 49 10 ARG A 52 ? ? -169.22 79.12 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG D 3 ? ? 0.062 'SIDE CHAIN' 2 5 DC D 2 ? ? 0.094 'SIDE CHAIN' 3 8 DC D 2 ? ? 0.091 'SIDE CHAIN' 4 9 DC D 5 ? ? 0.074 'SIDE CHAIN' 5 10 ARG A 52 ? ? 0.090 'SIDE CHAIN' # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #