HEADER COMPLEX (PROTEIN TRANSPORT/PEPTIDE) 14-JUL-98 1BK6 TITLE KARYOPHERIN ALPHA (YEAST) + SV40 T ANTIGEN NLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: KARYOPHERIN ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ARMADILLO DOMAIN; COMPND 5 SYNONYM: IMPORTIN ALPHA, SRP1P; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LARGE T ANTIGEN; COMPND 9 CHAIN: C, E; COMPND 10 FRAGMENT: NLS (NUCLEAR LOCALIZATION SIGNAL); COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: NLS PEPTIDE AT THE LARGER (FUNCTIONAL) BINDING SITE; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: LARGE T ANTIGEN; COMPND 15 CHAIN: D, F; COMPND 16 FRAGMENT: NLS (NUCLEAR LOCALIZATION SIGNAL); COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: NLS PEPTIDE AT THE SMALLER BINDING SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: W303; SOURCE 6 CELL_LINE: BL21; SOURCE 7 CELLULAR_LOCATION: CYTOPLASMIC/NUCLEAR; SOURCE 8 GENE: SRP1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTB; SOURCE 13 MOL_ID: 2; SOURCE 14 MOL_ID: 3 KEYWDS PROTEIN TRANSPORT, NLS NUCLEAR IMPORT, ARMADILLO REPEAT CONTAINING KEYWDS 2 PROTEIN, COMPLEX (PROTEIN TRANSPORT-PEPTIDE), COMPLEX (PROTEIN KEYWDS 3 TRANSPORT-PEPTIDE) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.CONTI,M.UY,L.LEIGHTON,G.BLOBEL,J.KURIYAN REVDAT 4 03-APR-24 1BK6 1 REMARK REVDAT 3 07-FEB-24 1BK6 1 SEQADV REVDAT 2 24-FEB-09 1BK6 1 VERSN REVDAT 1 13-JAN-99 1BK6 0 JRNL AUTH E.CONTI,M.UY,L.LEIGHTON,G.BLOBEL,J.KURIYAN JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE RECOGNITION OF A NUCLEAR JRNL TITL 2 LOCALIZATION SIGNAL BY THE NUCLEAR IMPORT FACTOR KARYOPHERIN JRNL TITL 3 ALPHA. JRNL REF CELL(CAMBRIDGE,MASS.) V. 94 193 1998 JRNL REFN ISSN 0092-8674 JRNL PMID 9695948 JRNL DOI 10.1016/S0092-8674(00)81419-1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 22717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1072 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.04300 REMARK 3 B22 (A**2) : -19.14700 REMARK 3 B33 (A**2) : 4.10500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.450 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 16.87 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.737 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : DEC-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22717 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.18800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: CNS 0.2 REMARK 200 STARTING MODEL: UNLIGANDED KARYOPHERIN ALPHA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 80.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 89 CG CD1 CD2 REMARK 470 GLN A 91 CG CD OE1 NE2 REMARK 470 GLU A 103 CD OE1 OE2 REMARK 470 LYS A 110 CD CE NZ REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 HIS A 119 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 141 CD OE1 OE2 REMARK 470 ASN A 215 OD1 ND2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 ASN A 225 CG OD1 ND2 REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 264 CD CE NZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LEU A 348 CD1 CD2 REMARK 470 LYS A 354 CD CE NZ REMARK 470 GLU A 374 CG CD OE1 OE2 REMARK 470 LEU A 415 CG CD1 CD2 REMARK 470 GLN A 416 CG CD OE1 NE2 REMARK 470 MET A 458 CG SD CE REMARK 470 LYS A 463 CD CE NZ REMARK 470 GLU A 464 CG CD OE1 OE2 REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 468 CG CD1 CD2 REMARK 470 ASN A 469 CG OD1 ND2 REMARK 470 GLU A 472 CG CD OE1 OE2 REMARK 470 ASP A 475 CG OD1 OD2 REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 470 GLU A 484 CD OE1 OE2 REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 GLU A 499 CD OE1 OE2 REMARK 470 LYS A 500 NZ REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 LEU B 89 CG CD1 CD2 REMARK 470 GLN B 91 CG CD OE1 NE2 REMARK 470 GLU B 103 CD OE1 OE2 REMARK 470 LYS B 110 CD CE NZ REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 HIS B 119 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 120 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 141 CD OE1 OE2 REMARK 470 ASN B 215 OD1 ND2 REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 ASN B 225 CG OD1 ND2 REMARK 470 ASN B 227 CG OD1 ND2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LYS B 264 CD CE NZ REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 LEU B 348 CD1 CD2 REMARK 470 LYS B 354 CD CE NZ REMARK 470 GLU B 374 CG CD OE1 OE2 REMARK 470 LEU B 415 CG CD1 CD2 REMARK 470 GLN B 416 CG CD OE1 NE2 REMARK 470 MET B 458 CG SD CE REMARK 470 LYS B 463 CD CE NZ REMARK 470 GLU B 464 CG CD OE1 OE2 REMARK 470 ARG B 466 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 468 CG CD1 CD2 REMARK 470 ASN B 469 CG OD1 ND2 REMARK 470 GLU B 472 CG CD OE1 OE2 REMARK 470 ASP B 475 CG OD1 OD2 REMARK 470 GLU B 478 CG CD OE1 OE2 REMARK 470 GLU B 484 CD OE1 OE2 REMARK 470 LYS B 496 CG CD CE NZ REMARK 470 GLU B 499 CD OE1 OE2 REMARK 470 LYS B 500 NZ REMARK 470 LYS B 503 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 443 CD NE CZ NH1 NH2 REMARK 480 ARG B 443 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 249 O HOH B 1 2.12 REMARK 500 OE1 GLU B 191 O HOH B 4 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 247 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO A 248 C - N - CA ANGL. DEV. = -11.1 DEGREES REMARK 500 PRO A 248 C - N - CD ANGL. DEV. = 13.0 DEGREES REMARK 500 LYS B 247 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO B 248 C - N - CA ANGL. DEV. = -11.9 DEGREES REMARK 500 PRO B 248 C - N - CD ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 117 -179.49 -56.25 REMARK 500 HIS A 119 -148.43 -88.76 REMARK 500 PRO A 122 68.12 -69.24 REMARK 500 SER A 186 -171.09 -68.83 REMARK 500 LYS A 247 -125.07 -71.79 REMARK 500 ASP A 251 106.82 -51.15 REMARK 500 VAL A 254 -63.25 -92.27 REMARK 500 ASP A 286 25.51 -73.95 REMARK 500 VAL A 327 5.56 -62.56 REMARK 500 ASN A 383 43.83 74.93 REMARK 500 GLU A 464 -81.41 -67.14 REMARK 500 ALA A 465 -76.37 -36.11 REMARK 500 ARG A 466 -1.66 -59.69 REMARK 500 CYS A 489 0.91 -66.97 REMARK 500 ARG B 117 179.16 -59.75 REMARK 500 HIS B 119 -148.88 -87.86 REMARK 500 PRO B 122 68.51 -67.76 REMARK 500 SER B 186 -170.06 -65.65 REMARK 500 LYS B 247 -123.59 -71.98 REMARK 500 ASP B 251 106.43 -54.74 REMARK 500 VAL B 254 -62.74 -93.05 REMARK 500 ASP B 286 26.67 -73.59 REMARK 500 VAL B 327 2.64 -65.71 REMARK 500 ASN B 383 46.51 75.84 REMARK 500 GLU B 464 -80.46 -67.44 REMARK 500 ALA B 465 -75.33 -38.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 1BK6 A 89 510 UNP Q02821 IMA1_YEAST 89 510 DBREF 1BK6 B 89 510 UNP Q02821 IMA1_YEAST 89 510 DBREF 1BK6 C 127 132 PDB 1BK6 1BK6 127 132 DBREF 1BK6 D 127 131 PDB 1BK6 1BK6 127 131 DBREF 1BK6 E 127 132 PDB 1BK6 1BK6 127 132 DBREF 1BK6 F 127 131 PDB 1BK6 1BK6 127 131 SEQADV 1BK6 ILE A 456 UNP Q02821 LEU 456 CONFLICT SEQADV 1BK6 ILE B 456 UNP Q02821 LEU 456 CONFLICT SEQRES 1 A 422 LEU PRO GLN MET THR GLN GLN LEU ASN SER ASP ASP MET SEQRES 2 A 422 GLN GLU GLN LEU SER ALA THR VAL LYS PHE ARG GLN ILE SEQRES 3 A 422 LEU SER ARG GLU HIS ARG PRO PRO ILE ASP VAL VAL ILE SEQRES 4 A 422 GLN ALA GLY VAL VAL PRO ARG LEU VAL GLU PHE MET ARG SEQRES 5 A 422 GLU ASN GLN PRO GLU MET LEU GLN LEU GLU ALA ALA TRP SEQRES 6 A 422 ALA LEU THR ASN ILE ALA SER GLY THR SER ALA GLN THR SEQRES 7 A 422 LYS VAL VAL VAL ASP ALA ASP ALA VAL PRO LEU PHE ILE SEQRES 8 A 422 GLN LEU LEU TYR THR GLY SER VAL GLU VAL LYS GLU GLN SEQRES 9 A 422 ALA ILE TRP ALA LEU GLY ASN VAL ALA GLY ASP SER THR SEQRES 10 A 422 ASP TYR ARG ASP TYR VAL LEU GLN CYS ASN ALA MET GLU SEQRES 11 A 422 PRO ILE LEU GLY LEU PHE ASN SER ASN LYS PRO SER LEU SEQRES 12 A 422 ILE ARG THR ALA THR TRP THR LEU SER ASN LEU CYS ARG SEQRES 13 A 422 GLY LYS LYS PRO GLN PRO ASP TRP SER VAL VAL SER GLN SEQRES 14 A 422 ALA LEU PRO THR LEU ALA LYS LEU ILE TYR SER MET ASP SEQRES 15 A 422 THR GLU THR LEU VAL ASP ALA CYS TRP ALA ILE SER TYR SEQRES 16 A 422 LEU SER ASP GLY PRO GLN GLU ALA ILE GLN ALA VAL ILE SEQRES 17 A 422 ASP VAL ARG ILE PRO LYS ARG LEU VAL GLU LEU LEU SER SEQRES 18 A 422 HIS GLU SER THR LEU VAL GLN THR PRO ALA LEU ARG ALA SEQRES 19 A 422 VAL GLY ASN ILE VAL THR GLY ASN ASP LEU GLN THR GLN SEQRES 20 A 422 VAL VAL ILE ASN ALA GLY VAL LEU PRO ALA LEU ARG LEU SEQRES 21 A 422 LEU LEU SER SER PRO LYS GLU ASN ILE LYS LYS GLU ALA SEQRES 22 A 422 CYS TRP THR ILE SER ASN ILE THR ALA GLY ASN THR GLU SEQRES 23 A 422 GLN ILE GLN ALA VAL ILE ASP ALA ASN LEU ILE PRO PRO SEQRES 24 A 422 LEU VAL LYS LEU LEU GLU VAL ALA GLU TYR LYS THR LYS SEQRES 25 A 422 LYS GLU ALA CYS TRP ALA ILE SER ASN ALA SER SER GLY SEQRES 26 A 422 GLY LEU GLN ARG PRO ASP ILE ILE ARG TYR LEU VAL SER SEQRES 27 A 422 GLN GLY CYS ILE LYS PRO LEU CYS ASP LEU LEU GLU ILE SEQRES 28 A 422 ALA ASP ASN ARG ILE ILE GLU VAL THR LEU ASP ALA LEU SEQRES 29 A 422 GLU ASN ILE ILE LYS MET GLY GLU ALA ASP LYS GLU ALA SEQRES 30 A 422 ARG GLY LEU ASN ILE ASN GLU ASN ALA ASP PHE ILE GLU SEQRES 31 A 422 LYS ALA GLY GLY MET GLU LYS ILE PHE ASN CYS GLN GLN SEQRES 32 A 422 ASN GLU ASN ASP LYS ILE TYR GLU LYS ALA TYR LYS ILE SEQRES 33 A 422 ILE GLU THR TYR PHE GLY SEQRES 1 C 6 LYS LYS LYS ARG LYS VAL SEQRES 1 D 5 ALA LYS LYS ALA ALA SEQRES 1 B 422 LEU PRO GLN MET THR GLN GLN LEU ASN SER ASP ASP MET SEQRES 2 B 422 GLN GLU GLN LEU SER ALA THR VAL LYS PHE ARG GLN ILE SEQRES 3 B 422 LEU SER ARG GLU HIS ARG PRO PRO ILE ASP VAL VAL ILE SEQRES 4 B 422 GLN ALA GLY VAL VAL PRO ARG LEU VAL GLU PHE MET ARG SEQRES 5 B 422 GLU ASN GLN PRO GLU MET LEU GLN LEU GLU ALA ALA TRP SEQRES 6 B 422 ALA LEU THR ASN ILE ALA SER GLY THR SER ALA GLN THR SEQRES 7 B 422 LYS VAL VAL VAL ASP ALA ASP ALA VAL PRO LEU PHE ILE SEQRES 8 B 422 GLN LEU LEU TYR THR GLY SER VAL GLU VAL LYS GLU GLN SEQRES 9 B 422 ALA ILE TRP ALA LEU GLY ASN VAL ALA GLY ASP SER THR SEQRES 10 B 422 ASP TYR ARG ASP TYR VAL LEU GLN CYS ASN ALA MET GLU SEQRES 11 B 422 PRO ILE LEU GLY LEU PHE ASN SER ASN LYS PRO SER LEU SEQRES 12 B 422 ILE ARG THR ALA THR TRP THR LEU SER ASN LEU CYS ARG SEQRES 13 B 422 GLY LYS LYS PRO GLN PRO ASP TRP SER VAL VAL SER GLN SEQRES 14 B 422 ALA LEU PRO THR LEU ALA LYS LEU ILE TYR SER MET ASP SEQRES 15 B 422 THR GLU THR LEU VAL ASP ALA CYS TRP ALA ILE SER TYR SEQRES 16 B 422 LEU SER ASP GLY PRO GLN GLU ALA ILE GLN ALA VAL ILE SEQRES 17 B 422 ASP VAL ARG ILE PRO LYS ARG LEU VAL GLU LEU LEU SER SEQRES 18 B 422 HIS GLU SER THR LEU VAL GLN THR PRO ALA LEU ARG ALA SEQRES 19 B 422 VAL GLY ASN ILE VAL THR GLY ASN ASP LEU GLN THR GLN SEQRES 20 B 422 VAL VAL ILE ASN ALA GLY VAL LEU PRO ALA LEU ARG LEU SEQRES 21 B 422 LEU LEU SER SER PRO LYS GLU ASN ILE LYS LYS GLU ALA SEQRES 22 B 422 CYS TRP THR ILE SER ASN ILE THR ALA GLY ASN THR GLU SEQRES 23 B 422 GLN ILE GLN ALA VAL ILE ASP ALA ASN LEU ILE PRO PRO SEQRES 24 B 422 LEU VAL LYS LEU LEU GLU VAL ALA GLU TYR LYS THR LYS SEQRES 25 B 422 LYS GLU ALA CYS TRP ALA ILE SER ASN ALA SER SER GLY SEQRES 26 B 422 GLY LEU GLN ARG PRO ASP ILE ILE ARG TYR LEU VAL SER SEQRES 27 B 422 GLN GLY CYS ILE LYS PRO LEU CYS ASP LEU LEU GLU ILE SEQRES 28 B 422 ALA ASP ASN ARG ILE ILE GLU VAL THR LEU ASP ALA LEU SEQRES 29 B 422 GLU ASN ILE ILE LYS MET GLY GLU ALA ASP LYS GLU ALA SEQRES 30 B 422 ARG GLY LEU ASN ILE ASN GLU ASN ALA ASP PHE ILE GLU SEQRES 31 B 422 LYS ALA GLY GLY MET GLU LYS ILE PHE ASN CYS GLN GLN SEQRES 32 B 422 ASN GLU ASN ASP LYS ILE TYR GLU LYS ALA TYR LYS ILE SEQRES 33 B 422 ILE GLU THR TYR PHE GLY SEQRES 1 E 6 LYS LYS LYS ARG LYS VAL SEQRES 1 F 5 ALA LYS LYS ALA ALA FORMUL 7 HOH *12(H2 O) HELIX 1 1 PRO A 90 ASN A 97 1 8 HELIX 2 2 MET A 101 LEU A 115 1 15 HELIX 3 3 ILE A 123 GLN A 128 1 6 HELIX 4 4 VAL A 132 MET A 139 1 8 HELIX 5 5 GLU A 145 SER A 160 1 16 HELIX 6 6 SER A 163 VAL A 170 1 8 HELIX 7 7 ALA A 174 THR A 184 1 11 HELIX 8 8 VAL A 187 ASP A 203 1 17 HELIX 9 9 THR A 205 CYS A 214 1 10 HELIX 10 10 ALA A 216 ASN A 225 1 10 HELIX 11 11 PRO A 229 CYS A 243 1 15 HELIX 12 12 TRP A 252 TYR A 267 1 16 HELIX 13 13 THR A 271 SER A 285 1 15 HELIX 14 14 GLN A 289 ASP A 297 1 9 HELIX 15 15 PRO A 301 SER A 309 1 9 HELIX 16 16 THR A 313 THR A 328 1 16 HELIX 17 17 ASP A 331 ASN A 339 1 9 HELIX 18 18 VAL A 342 SER A 351 1 10 HELIX 19 19 GLU A 355 ILE A 368 1 14 HELIX 20 20 THR A 373 ALA A 382 1 10 HELIX 21 21 ILE A 385 VAL A 394 1 10 HELIX 22 22 TYR A 397 GLY A 414 1 18 HELIX 23 23 PRO A 418 SER A 426 1 9 HELIX 24 24 CYS A 429 GLU A 438 1 10 HELIX 25 25 ASN A 442 ALA A 465 1 24 HELIX 26 26 GLU A 472 LYS A 479 1 8 HELIX 27 27 GLY A 482 GLN A 491 1 10 HELIX 28 28 ASP A 495 TYR A 508 1 14 HELIX 29 29 PRO B 90 ASN B 97 1 8 HELIX 30 30 MET B 101 LEU B 115 1 15 HELIX 31 31 ILE B 123 GLN B 128 1 6 HELIX 32 32 VAL B 132 MET B 139 1 8 HELIX 33 33 GLU B 145 SER B 160 1 16 HELIX 34 34 SER B 163 ASP B 171 1 9 HELIX 35 35 ALA B 174 THR B 184 1 11 HELIX 36 36 VAL B 187 ASP B 203 1 17 HELIX 37 37 THR B 205 CYS B 214 1 10 HELIX 38 38 ALA B 216 ASN B 225 1 10 HELIX 39 39 PRO B 229 CYS B 243 1 15 HELIX 40 40 TRP B 252 TYR B 267 1 16 HELIX 41 41 THR B 271 SER B 285 1 15 HELIX 42 42 GLN B 289 ASP B 297 1 9 HELIX 43 43 PRO B 301 SER B 309 1 9 HELIX 44 44 THR B 313 THR B 328 1 16 HELIX 45 45 ASP B 331 ASN B 339 1 9 HELIX 46 46 VAL B 342 SER B 351 1 10 HELIX 47 47 GLU B 355 ILE B 368 1 14 HELIX 48 48 THR B 373 ASP B 381 1 9 HELIX 49 49 ILE B 385 VAL B 394 1 10 HELIX 50 50 TYR B 397 GLY B 414 1 18 HELIX 51 51 PRO B 418 SER B 426 1 9 HELIX 52 52 CYS B 429 GLU B 438 1 10 HELIX 53 53 ASN B 442 ALA B 465 1 24 HELIX 54 54 GLU B 472 LYS B 479 1 8 HELIX 55 55 GLY B 482 GLN B 491 1 10 HELIX 56 56 ASP B 495 TYR B 508 1 14 CRYST1 161.120 75.750 84.460 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006207 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011840 0.00000