data_1BK9 # _entry.id 1BK9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BK9 pdb_00001bk9 10.2210/pdb1bk9/pdb WWPDB D_1000171853 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-03-02 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2019-11-27 5 'Structure model' 2 1 2023-08-02 6 'Structure model' 2 2 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' Other 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' 'Refinement description' 12 6 'Structure model' 'Data collection' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' exptl_crystal 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_distant_solvent_atoms 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' struct_conn 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_initial_refinement_model 10 5 'Structure model' struct_conn 11 5 'Structure model' struct_site 12 6 'Structure model' chem_comp_atom 13 6 'Structure model' chem_comp_bond 14 6 'Structure model' pdbx_entry_details 15 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.formula' 2 4 'Structure model' '_chem_comp.formula_weight' 3 4 'Structure model' '_chem_comp.name' 4 4 'Structure model' '_entity.formula_weight' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_exptl_crystal.density_percent_sol' 7 4 'Structure model' '_pdbx_database_status.process_site' 8 4 'Structure model' '_pdbx_entity_nonpoly.name' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BK9 _pdbx_database_status.recvd_initial_deposition_date 1998-07-16 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, H.' 1 'Tang, L.' 2 'Wang, X.' 3 'Lin, Z.' 4 'Zhou, Y.' 5 # _citation.id primary _citation.title 'Structure of a snake venom phospholipase A2 modified by p-bromo-phenacyl-bromide.' _citation.journal_abbrev Toxicon _citation.journal_volume 36 _citation.page_first 875 _citation.page_last 886 _citation.year 1998 _citation.journal_id_ASTM TOXIA6 _citation.country UK _citation.journal_id_ISSN 0041-0101 _citation.journal_id_CSD 2043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9663694 _citation.pdbx_database_id_DOI '10.1016/S0041-0101(97)00169-4' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, H.' 1 ? primary 'Tang, L.' 2 ? primary 'Wang, X.' 3 ? primary 'Zhou, Y.' 4 ? primary 'Lin, Z.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PHOSPHOLIPASE A2' 13988.814 1 3.1.1.4 ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'p-Bromophenacyl bromide' 277.941 1 ? ? ? ? 4 non-polymer syn 1,4-BUTANEDIOL 90.121 1 ? ? ? ? 5 water nat water 18.015 86 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLIQFETLIMKVAKKSGMFWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTGCDPKMDVYSFSEENGDIVCGGDDP CKKEICECDRAAAICFRDNLTLYNDKKYWAFGAKNCPQEESEPC ; _entity_poly.pdbx_seq_one_letter_code_can ;SLIQFETLIMKVAKKSGMFWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTGCDPKMDVYSFSEENGDIVCGGDDP CKKEICECDRAAAICFRDNLTLYNDKKYWAFGAKNCPQEESEPC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'p-Bromophenacyl bromide' PBP 4 1,4-BUTANEDIOL BU1 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 ILE n 1 4 GLN n 1 5 PHE n 1 6 GLU n 1 7 THR n 1 8 LEU n 1 9 ILE n 1 10 MET n 1 11 LYS n 1 12 VAL n 1 13 ALA n 1 14 LYS n 1 15 LYS n 1 16 SER n 1 17 GLY n 1 18 MET n 1 19 PHE n 1 20 TRP n 1 21 TYR n 1 22 SER n 1 23 ASN n 1 24 TYR n 1 25 GLY n 1 26 CYS n 1 27 TYR n 1 28 CYS n 1 29 GLY n 1 30 TRP n 1 31 GLY n 1 32 GLY n 1 33 GLN n 1 34 GLY n 1 35 ARG n 1 36 PRO n 1 37 GLN n 1 38 ASP n 1 39 ALA n 1 40 THR n 1 41 ASP n 1 42 ARG n 1 43 CYS n 1 44 CYS n 1 45 PHE n 1 46 VAL n 1 47 HIS n 1 48 ASP n 1 49 CYS n 1 50 CYS n 1 51 TYR n 1 52 GLY n 1 53 LYS n 1 54 VAL n 1 55 THR n 1 56 GLY n 1 57 CYS n 1 58 ASP n 1 59 PRO n 1 60 LYS n 1 61 MET n 1 62 ASP n 1 63 VAL n 1 64 TYR n 1 65 SER n 1 66 PHE n 1 67 SER n 1 68 GLU n 1 69 GLU n 1 70 ASN n 1 71 GLY n 1 72 ASP n 1 73 ILE n 1 74 VAL n 1 75 CYS n 1 76 GLY n 1 77 GLY n 1 78 ASP n 1 79 ASP n 1 80 PRO n 1 81 CYS n 1 82 LYS n 1 83 LYS n 1 84 GLU n 1 85 ILE n 1 86 CYS n 1 87 GLU n 1 88 CYS n 1 89 ASP n 1 90 ARG n 1 91 ALA n 1 92 ALA n 1 93 ALA n 1 94 ILE n 1 95 CYS n 1 96 PHE n 1 97 ARG n 1 98 ASP n 1 99 ASN n 1 100 LEU n 1 101 THR n 1 102 LEU n 1 103 TYR n 1 104 ASN n 1 105 ASP n 1 106 LYS n 1 107 LYS n 1 108 TYR n 1 109 TRP n 1 110 ALA n 1 111 PHE n 1 112 GLY n 1 113 ALA n 1 114 LYS n 1 115 ASN n 1 116 CYS n 1 117 PRO n 1 118 GLN n 1 119 GLU n 1 120 GLU n 1 121 SER n 1 122 GLU n 1 123 PRO n 1 124 CYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'halys viper' _entity_src_nat.pdbx_organism_scientific 'Gloydius halys' _entity_src_nat.pdbx_ncbi_taxonomy_id 8714 _entity_src_nat.genus Gloydius _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BU1 non-polymer . 1,4-BUTANEDIOL ? 'C4 H10 O2' 90.121 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PBP non-polymer . 'p-Bromophenacyl bromide' ? 'C8 H6 Br2 O' 277.941 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 MET 10 10 10 MET MET A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LYS 15 16 16 LYS LYS A . n A 1 16 SER 16 17 17 SER SER A . n A 1 17 GLY 17 18 18 GLY GLY A . n A 1 18 MET 18 19 19 MET MET A . n A 1 19 PHE 19 20 20 PHE PHE A . n A 1 20 TRP 20 21 21 TRP TRP A . n A 1 21 TYR 21 22 22 TYR TYR A . n A 1 22 SER 22 23 23 SER SER A . n A 1 23 ASN 23 24 24 ASN ASN A . n A 1 24 TYR 24 25 25 TYR TYR A . n A 1 25 GLY 25 26 26 GLY GLY A . n A 1 26 CYS 26 27 27 CYS CYS A . n A 1 27 TYR 27 28 28 TYR TYR A . n A 1 28 CYS 28 29 29 CYS CYS A . n A 1 29 GLY 29 30 30 GLY GLY A . n A 1 30 TRP 30 31 31 TRP TRP A . n A 1 31 GLY 31 32 32 GLY GLY A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 GLN 33 34 34 GLN GLN A . n A 1 34 GLY 34 35 35 GLY GLY A . n A 1 35 ARG 35 36 36 ARG ARG A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 GLN 37 38 38 GLN GLN A . n A 1 38 ASP 38 39 39 ASP ASP A . n A 1 39 ALA 39 40 40 ALA ALA A . n A 1 40 THR 40 41 41 THR THR A . n A 1 41 ASP 41 42 42 ASP ASP A . n A 1 42 ARG 42 43 43 ARG ARG A . n A 1 43 CYS 43 44 44 CYS CYS A . n A 1 44 CYS 44 45 45 CYS CYS A . n A 1 45 PHE 45 46 46 PHE PHE A . n A 1 46 VAL 46 47 47 VAL VAL A . n A 1 47 HIS 47 48 48 HIS HIS A . n A 1 48 ASP 48 49 49 ASP ASP A . n A 1 49 CYS 49 50 50 CYS CYS A . n A 1 50 CYS 50 51 51 CYS CYS A . n A 1 51 TYR 51 52 52 TYR TYR A . n A 1 52 GLY 52 53 53 GLY GLY A . n A 1 53 LYS 53 54 54 LYS LYS A . n A 1 54 VAL 54 55 55 VAL VAL A . n A 1 55 THR 55 56 56 THR THR A . n A 1 56 GLY 56 59 59 GLY GLY A . n A 1 57 CYS 57 61 61 CYS CYS A . n A 1 58 ASP 58 67 67 ASP ASP A . n A 1 59 PRO 59 68 68 PRO PRO A . n A 1 60 LYS 60 69 69 LYS LYS A . n A 1 61 MET 61 70 70 MET MET A . n A 1 62 ASP 62 71 71 ASP ASP A . n A 1 63 VAL 63 72 72 VAL VAL A . n A 1 64 TYR 64 73 73 TYR TYR A . n A 1 65 SER 65 74 74 SER SER A . n A 1 66 PHE 66 75 75 PHE PHE A . n A 1 67 SER 67 76 76 SER SER A . n A 1 68 GLU 68 77 77 GLU GLU A . n A 1 69 GLU 69 78 78 GLU GLU A . n A 1 70 ASN 70 79 79 ASN ASN A . n A 1 71 GLY 71 80 80 GLY GLY A . n A 1 72 ASP 72 81 81 ASP ASP A . n A 1 73 ILE 73 82 82 ILE ILE A . n A 1 74 VAL 74 83 83 VAL VAL A . n A 1 75 CYS 75 84 84 CYS CYS A . n A 1 76 GLY 76 85 85 GLY GLY A . n A 1 77 GLY 77 86 86 GLY GLY A . n A 1 78 ASP 78 88 88 ASP ASP A . n A 1 79 ASP 79 89 89 ASP ASP A . n A 1 80 PRO 80 90 90 PRO PRO A . n A 1 81 CYS 81 91 91 CYS CYS A . n A 1 82 LYS 82 92 92 LYS LYS A . n A 1 83 LYS 83 93 93 LYS LYS A . n A 1 84 GLU 84 94 94 GLU GLU A . n A 1 85 ILE 85 95 95 ILE ILE A . n A 1 86 CYS 86 96 96 CYS CYS A . n A 1 87 GLU 87 97 97 GLU GLU A . n A 1 88 CYS 88 98 98 CYS CYS A . n A 1 89 ASP 89 99 99 ASP ASP A . n A 1 90 ARG 90 100 100 ARG ARG A . n A 1 91 ALA 91 101 101 ALA ALA A . n A 1 92 ALA 92 102 102 ALA ALA A . n A 1 93 ALA 93 103 103 ALA ALA A . n A 1 94 ILE 94 104 104 ILE ILE A . n A 1 95 CYS 95 105 105 CYS CYS A . n A 1 96 PHE 96 106 106 PHE PHE A . n A 1 97 ARG 97 107 107 ARG ARG A . n A 1 98 ASP 98 108 108 ASP ASP A . n A 1 99 ASN 99 109 109 ASN ASN A . n A 1 100 LEU 100 110 110 LEU LEU A . n A 1 101 THR 101 111 111 THR THR A . n A 1 102 LEU 102 112 112 LEU LEU A . n A 1 103 TYR 103 113 113 TYR TYR A . n A 1 104 ASN 104 114 114 ASN ASN A . n A 1 105 ASP 105 115 115 ASP ASP A . n A 1 106 LYS 106 116 116 LYS LYS A . n A 1 107 LYS 107 117 117 LYS LYS A . n A 1 108 TYR 108 118 118 TYR TYR A . n A 1 109 TRP 109 119 119 TRP TRP A . n A 1 110 ALA 110 120 120 ALA ALA A . n A 1 111 PHE 111 121 121 PHE PHE A . n A 1 112 GLY 112 122 122 GLY GLY A . n A 1 113 ALA 113 123 123 ALA ALA A . n A 1 114 LYS 114 124 124 LYS LYS A . n A 1 115 ASN 115 125 125 ASN ASN A . n A 1 116 CYS 116 126 126 CYS CYS A . n A 1 117 PRO 117 127 127 PRO PRO A . n A 1 118 GLN 118 128 128 GLN GLN A . n A 1 119 GLU 119 129 129 GLU GLU A . n A 1 120 GLU 120 130 130 GLU GLU A . n A 1 121 SER 121 131 131 SER SER A . n A 1 122 GLU 122 132 132 GLU GLU A . n A 1 123 PRO 123 133 133 PRO PRO A . n A 1 124 CYS 124 134 134 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 200 200 CA CA A . C 3 PBP 1 400 400 PBP PBP A . D 4 BU1 1 601 601 BU1 BU1 A . E 5 HOH 1 201 201 HOH HOH A . E 5 HOH 2 202 202 HOH HOH A . E 5 HOH 3 203 203 HOH HOH A . E 5 HOH 4 204 204 HOH HOH A . E 5 HOH 5 205 205 HOH HOH A . E 5 HOH 6 206 206 HOH HOH A . E 5 HOH 7 207 207 HOH HOH A . E 5 HOH 8 208 208 HOH HOH A . E 5 HOH 9 209 209 HOH HOH A . E 5 HOH 10 210 210 HOH HOH A . E 5 HOH 11 213 213 HOH HOH A . E 5 HOH 12 219 219 HOH HOH A . E 5 HOH 13 220 220 HOH HOH A . E 5 HOH 14 221 221 HOH HOH A . E 5 HOH 15 222 222 HOH HOH A . E 5 HOH 16 223 223 HOH HOH A . E 5 HOH 17 224 224 HOH HOH A . E 5 HOH 18 225 225 HOH HOH A . E 5 HOH 19 226 226 HOH HOH A . E 5 HOH 20 227 227 HOH HOH A . E 5 HOH 21 228 228 HOH HOH A . E 5 HOH 22 230 230 HOH HOH A . E 5 HOH 23 234 234 HOH HOH A . E 5 HOH 24 236 236 HOH HOH A . E 5 HOH 25 239 239 HOH HOH A . E 5 HOH 26 242 242 HOH HOH A . E 5 HOH 27 243 243 HOH HOH A . E 5 HOH 28 245 245 HOH HOH A . E 5 HOH 29 247 247 HOH HOH A . E 5 HOH 30 248 248 HOH HOH A . E 5 HOH 31 252 252 HOH HOH A . E 5 HOH 32 253 253 HOH HOH A . E 5 HOH 33 255 255 HOH HOH A . E 5 HOH 34 258 258 HOH HOH A . E 5 HOH 35 259 259 HOH HOH A . E 5 HOH 36 262 262 HOH HOH A . E 5 HOH 37 263 263 HOH HOH A . E 5 HOH 38 264 264 HOH HOH A . E 5 HOH 39 268 268 HOH HOH A . E 5 HOH 40 269 269 HOH HOH A . E 5 HOH 41 270 270 HOH HOH A . E 5 HOH 42 274 274 HOH HOH A . E 5 HOH 43 278 278 HOH HOH A . E 5 HOH 44 280 280 HOH HOH A . E 5 HOH 45 281 281 HOH HOH A . E 5 HOH 46 282 282 HOH HOH A . E 5 HOH 47 283 283 HOH HOH A . E 5 HOH 48 284 284 HOH HOH A . E 5 HOH 49 286 286 HOH HOH A . E 5 HOH 50 292 292 HOH HOH A . E 5 HOH 51 293 293 HOH HOH A . E 5 HOH 52 294 294 HOH HOH A . E 5 HOH 53 295 295 HOH HOH A . E 5 HOH 54 298 298 HOH HOH A . E 5 HOH 55 301 301 HOH HOH A . E 5 HOH 56 305 305 HOH HOH A . E 5 HOH 57 316 316 HOH HOH A . E 5 HOH 58 318 318 HOH HOH A . E 5 HOH 59 323 323 HOH HOH A . E 5 HOH 60 332 332 HOH HOH A . E 5 HOH 61 340 340 HOH HOH A . E 5 HOH 62 341 341 HOH HOH A . E 5 HOH 63 342 342 HOH HOH A . E 5 HOH 64 344 344 HOH HOH A . E 5 HOH 65 345 345 HOH HOH A . E 5 HOH 66 346 346 HOH HOH A . E 5 HOH 67 347 347 HOH HOH A . E 5 HOH 68 348 348 HOH HOH A . E 5 HOH 69 349 349 HOH HOH A . E 5 HOH 70 350 350 HOH HOH A . E 5 HOH 71 351 351 HOH HOH A . E 5 HOH 72 353 353 HOH HOH A . E 5 HOH 73 354 354 HOH HOH A . E 5 HOH 74 355 355 HOH HOH A . E 5 HOH 75 358 358 HOH HOH A . E 5 HOH 76 359 359 HOH HOH A . E 5 HOH 77 360 360 HOH HOH A . E 5 HOH 78 361 361 HOH HOH A . E 5 HOH 79 362 362 HOH HOH A . E 5 HOH 80 363 363 HOH HOH A . E 5 HOH 81 364 364 HOH HOH A . E 5 HOH 82 366 366 HOH HOH A . E 5 HOH 83 367 367 HOH HOH A . E 5 HOH 84 368 368 HOH HOH A . E 5 HOH 85 369 369 HOH HOH A . E 5 HOH 86 370 370 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language XENGEN 'data collection' SOFTWARE ? 1 ? ? ? ? XENGEN 'data reduction' SOFTWARE ? 2 ? ? ? ? X-PLOR 'model building' 3.851 ? 3 ? ? ? ? X-PLOR refinement 3.851 ? 4 ? ? ? ? XENGEN 'data scaling' . ? 5 ? ? ? ? X-PLOR phasing 3.851 ? 6 ? ? ? ? # _cell.entry_id 1BK9 _cell.length_a 82.820 _cell.length_b 82.820 _cell.length_c 32.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BK9 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # _exptl.entry_id 1BK9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 47.01 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 6.5' # _diffrn.id 1 _diffrn.ambient_temp 290 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1996-04-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BK9 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 1.93 _reflns.number_obs 8600 _reflns.number_all ? _reflns.percent_possible_obs 81.06 _reflns.pdbx_Rmerge_I_obs 0.0619 _reflns.pdbx_Rsym_value 0.0619 _reflns.pdbx_netI_over_sigmaI 15.795 _reflns.B_iso_Wilson_estimate 12.9 _reflns.pdbx_redundancy 3.0 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.93 _reflns_shell.d_res_low 2.01 _reflns_shell.percent_possible_all 34.6 _reflns_shell.Rmerge_I_obs 0.034 _reflns_shell.pdbx_Rsym_value 0.034 _reflns_shell.meanI_over_sigI_obs 2.15 _reflns_shell.pdbx_redundancy 1.9 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BK9 _refine.ls_number_reflns_obs 7440 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 87.1 _refine.ls_R_factor_obs 0.153 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.153 _refine.ls_R_factor_R_free 0.226 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.8 _refine.ls_number_reflns_R_free 801 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 24.6 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'TOPHBR.PHI,TOPHBR.PRO, TOPHBR.WAT' _refine.pdbx_starting_model 'ACIDIC PLA2 (PDB ENTRY 1PSJ)' _refine.pdbx_method_to_determine_struct 'DIFFERENT FOURIER' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1BK9 _refine_analyze.Luzzati_coordinate_error_obs 0.17 _refine_analyze.Luzzati_sigma_a_obs 0.18 _refine_analyze.Luzzati_d_res_low_obs 6.00 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.07 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 970 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 1076 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 6.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.8 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 22.4 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.14 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.59 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.53 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 3.01 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 4.47 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.09 _refine_ls_shell.number_reflns_R_work 620 _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.percent_reflns_obs 66.0 _refine_ls_shell.R_factor_R_free 0.215 _refine_ls_shell.R_factor_R_free_error 0.024 _refine_ls_shell.percent_reflns_R_free 11.2 _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAMBR.PRO TOPHBR.BUT 'X-RAY DIFFRACTION' 2 PARAMBR.PBP TOPHBR.ICA 'X-RAY DIFFRACTION' 3 ? TOPHBR.PBP 'X-RAY DIFFRACTION' 4 ? TOPHBR.PEP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1BK9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1BK9 _struct.title 'PHOSPHOLIPASE A2 MODIFIED BY PBPB' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BK9 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, PHOSPHOLIPASE A2, PLATELET AGGREGATION INHIBITOR, PBPB' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PA21B_AGKHP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P14418 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;SLIQFETLIMKVAKKSGMFWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTGCDPKMDVYSFSEENGDIVCGGDDP CKKEICECDRAAAICFRDNLTLYNDKKYWAFGAKNCPQEESEPC ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1BK9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 124 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14418 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 134 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 2 ? ALA A 13 ? LEU A 2 ALA A 13 1 ? 12 HELX_P HELX_P2 2 GLY A 17 ? TRP A 20 ? GLY A 18 TRP A 21 1 ? 4 HELX_P HELX_P3 3 ALA A 39 ? LYS A 53 ? ALA A 40 LYS A 54 1 ? 15 HELX_P HELX_P4 4 PRO A 80 ? LEU A 102 ? PRO A 90 LEU A 112 1 ? 23 HELX_P HELX_P5 5 ASP A 105 ? TYR A 108 ? ASP A 115 TYR A 118 1 ? 4 HELX_P HELX_P6 6 ALA A 113 ? CYS A 116 ? ALA A 123 CYS A 126 5 ? 4 HELX_P HELX_P7 7 GLN A 118 ? GLU A 120 ? GLN A 128 GLU A 130 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 116 SG ? ? A CYS 27 A CYS 126 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 29 A CYS 45 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf3 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 44 A CYS 105 1_555 ? ? ? ? ? ? ? 2.010 ? ? disulf4 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 124 SG ? ? A CYS 50 A CYS 134 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf5 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 51 A CYS 98 1_555 ? ? ? ? ? ? ? 2.014 ? ? disulf6 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 61 A CYS 91 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf7 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 84 A CYS 96 1_555 ? ? ? ? ? ? ? 1.996 ? ? covale1 covale one ? A HIS 47 ND1 ? ? ? 1_555 C PBP . CH ? ? A HIS 48 A PBP 400 1_555 ? ? ? ? ? ? ? 1.463 ? ? metalc1 metalc ? ? A TYR 27 O ? ? ? 1_555 B CA . CA ? ? A TYR 28 A CA 200 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc2 metalc ? ? A GLY 29 O ? ? ? 1_555 B CA . CA ? ? A GLY 30 A CA 200 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc3 metalc ? ? A GLY 31 O ? ? ? 1_555 B CA . CA ? ? A GLY 32 A CA 200 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc4 metalc ? ? A ASP 48 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 49 A CA 200 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc5 metalc ? ? A ASP 48 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 49 A CA 200 1_555 ? ? ? ? ? ? ? 3.053 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A TYR 27 ? A TYR 28 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 O ? A GLY 29 ? A GLY 30 ? 1_555 87.5 ? 2 O ? A TYR 27 ? A TYR 28 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 O ? A GLY 31 ? A GLY 32 ? 1_555 109.2 ? 3 O ? A GLY 29 ? A GLY 30 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 O ? A GLY 31 ? A GLY 32 ? 1_555 98.8 ? 4 O ? A TYR 27 ? A TYR 28 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 107.1 ? 5 O ? A GLY 29 ? A GLY 30 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 160.0 ? 6 O ? A GLY 31 ? A GLY 32 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 89.3 ? 7 O ? A TYR 27 ? A TYR 28 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 122.4 ? 8 O ? A GLY 29 ? A GLY 30 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 115.3 ? 9 O ? A GLY 31 ? A GLY 32 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 117.3 ? 10 OD2 ? A ASP 48 ? A ASP 49 ? 1_555 CA ? B CA . ? A CA 200 ? 1_555 OD1 ? A ASP 48 ? A ASP 49 ? 1_555 45.4 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 PBP C . ? HIS A 47 ? PBP A 400 ? 1_555 HIS A 48 ? 1_555 CH ND1 HIS 2 PBP None 'Covalent chemical modification' 2 CYS A 26 ? CYS A 116 ? CYS A 27 ? 1_555 CYS A 126 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 28 ? CYS A 44 ? CYS A 29 ? 1_555 CYS A 45 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 43 ? CYS A 95 ? CYS A 44 ? 1_555 CYS A 105 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 49 ? CYS A 124 ? CYS A 50 ? 1_555 CYS A 134 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 50 ? CYS A 88 ? CYS A 51 ? 1_555 CYS A 98 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 57 ? CYS A 81 ? CYS A 61 ? 1_555 CYS A 91 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS A 75 ? CYS A 86 ? CYS A 84 ? 1_555 CYS A 96 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 65 ? GLU A 69 ? SER A 74 GLU A 78 A 2 ASP A 72 ? GLY A 76 ? ASP A 81 GLY A 85 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 65 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 74 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id GLY _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 76 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 85 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details PBP Unknown ? ? ? ? 1 'P-BROMO-PHENACYL-BROMIDE COVALENTLY BINDING WITH ND1 OF HIS 48.' AC1 Software A CA 200 ? 4 'BINDING SITE FOR RESIDUE CA A 200' AC2 Software A PBP 400 ? 4 'BINDING SITE FOR RESIDUE PBP A 400' AC3 Software A BU1 601 ? 7 'BINDING SITE FOR RESIDUE BU1 A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 PBP 1 HIS A 47 ? HIS A 48 . ? 1_555 ? 2 AC1 4 TYR A 27 ? TYR A 28 . ? 1_555 ? 3 AC1 4 GLY A 29 ? GLY A 30 . ? 1_555 ? 4 AC1 4 GLY A 31 ? GLY A 32 . ? 1_555 ? 5 AC1 4 ASP A 48 ? ASP A 49 . ? 1_555 ? 6 AC2 4 TYR A 21 ? TYR A 22 . ? 1_555 ? 7 AC2 4 GLY A 29 ? GLY A 30 . ? 1_555 ? 8 AC2 4 HIS A 47 ? HIS A 48 . ? 1_555 ? 9 AC2 4 ASP A 48 ? ASP A 49 . ? 1_555 ? 10 AC3 7 MET A 18 ? MET A 19 . ? 6_655 ? 11 AC3 7 PHE A 19 ? PHE A 20 . ? 6_655 ? 12 AC3 7 SER A 22 ? SER A 23 . ? 6_655 ? 13 AC3 7 PRO A 36 ? PRO A 37 . ? 1_555 ? 14 AC3 7 ASP A 38 ? ASP A 39 . ? 1_555 ? 15 AC3 7 ARG A 42 ? ARG A 43 . ? 1_555 ? 16 AC3 7 HOH E . ? HOH A 316 . ? 1_555 ? # _pdbx_entry_details.entry_id 1BK9 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD1 A TRP 21 ? ? CG A TRP 21 ? ? CD2 A TRP 21 ? ? 112.62 106.30 6.32 0.80 N 2 1 CE2 A TRP 21 ? ? CD2 A TRP 21 ? ? CG A TRP 21 ? ? 101.40 107.30 -5.90 0.80 N 3 1 CD1 A TRP 31 ? ? CG A TRP 31 ? ? CD2 A TRP 31 ? ? 113.02 106.30 6.72 0.80 N 4 1 CE2 A TRP 31 ? ? CD2 A TRP 31 ? ? CG A TRP 31 ? ? 101.75 107.30 -5.55 0.80 N 5 1 CA A GLN 34 ? ? CB A GLN 34 ? ? CG A GLN 34 ? ? 127.41 113.40 14.01 2.20 N 6 1 NE A ARG 43 ? ? CZ A ARG 43 ? ? NH2 A ARG 43 ? ? 117.24 120.30 -3.06 0.50 N 7 1 CB A TYR 52 ? ? CG A TYR 52 ? ? CD2 A TYR 52 ? ? 116.48 121.00 -4.52 0.60 N 8 1 CB A TYR 73 ? ? CG A TYR 73 ? ? CD2 A TYR 73 ? ? 116.53 121.00 -4.47 0.60 N 9 1 NE A ARG 100 ? ? CZ A ARG 100 ? ? NH1 A ARG 100 ? ? 123.51 120.30 3.21 0.50 N 10 1 CB A TYR 113 ? ? CG A TYR 113 ? ? CD1 A TYR 113 ? ? 116.97 121.00 -4.03 0.60 N 11 1 CD1 A TRP 119 ? ? CG A TRP 119 ? ? CD2 A TRP 119 ? ? 112.41 106.30 6.11 0.80 N 12 1 CE2 A TRP 119 ? ? CD2 A TRP 119 ? ? CG A TRP 119 ? ? 101.57 107.30 -5.73 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 24 ? ? -155.71 54.07 2 1 ASN A 79 ? ? 47.23 29.70 3 1 ASN A 114 ? ? -154.03 82.29 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 224 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.97 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BU1 C1 C N N 74 BU1 C2 C N N 75 BU1 C3 C N N 76 BU1 C4 C N N 77 BU1 O5 O N N 78 BU1 O6 O N N 79 BU1 H11 H N N 80 BU1 H12 H N N 81 BU1 H21 H N N 82 BU1 H22 H N N 83 BU1 H31 H N N 84 BU1 H32 H N N 85 BU1 H41 H N N 86 BU1 H42 H N N 87 BU1 HO5 H N N 88 BU1 HO6 H N N 89 CA CA CA N N 90 CYS N N N N 91 CYS CA C N R 92 CYS C C N N 93 CYS O O N N 94 CYS CB C N N 95 CYS SG S N N 96 CYS OXT O N N 97 CYS H H N N 98 CYS H2 H N N 99 CYS HA H N N 100 CYS HB2 H N N 101 CYS HB3 H N N 102 CYS HG H N N 103 CYS HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 PBP CH C N N 267 PBP CG C Y N 268 PBP CD1 C Y N 269 PBP CE1 C Y N 270 PBP CD2 C Y N 271 PBP CE2 C Y N 272 PBP CZ C Y N 273 PBP BR BR N N 274 PBP CR C N N 275 PBP O O N N 276 PBP HH1 H N N 277 PBP HH2 H N N 278 PBP HD1 H N N 279 PBP HE1 H N N 280 PBP HD2 H N N 281 PBP HE2 H N N 282 PBP BR2 BR N N 283 PHE N N N N 284 PHE CA C N S 285 PHE C C N N 286 PHE O O N N 287 PHE CB C N N 288 PHE CG C Y N 289 PHE CD1 C Y N 290 PHE CD2 C Y N 291 PHE CE1 C Y N 292 PHE CE2 C Y N 293 PHE CZ C Y N 294 PHE OXT O N N 295 PHE H H N N 296 PHE H2 H N N 297 PHE HA H N N 298 PHE HB2 H N N 299 PHE HB3 H N N 300 PHE HD1 H N N 301 PHE HD2 H N N 302 PHE HE1 H N N 303 PHE HE2 H N N 304 PHE HZ H N N 305 PHE HXT H N N 306 PRO N N N N 307 PRO CA C N S 308 PRO C C N N 309 PRO O O N N 310 PRO CB C N N 311 PRO CG C N N 312 PRO CD C N N 313 PRO OXT O N N 314 PRO H H N N 315 PRO HA H N N 316 PRO HB2 H N N 317 PRO HB3 H N N 318 PRO HG2 H N N 319 PRO HG3 H N N 320 PRO HD2 H N N 321 PRO HD3 H N N 322 PRO HXT H N N 323 SER N N N N 324 SER CA C N S 325 SER C C N N 326 SER O O N N 327 SER CB C N N 328 SER OG O N N 329 SER OXT O N N 330 SER H H N N 331 SER H2 H N N 332 SER HA H N N 333 SER HB2 H N N 334 SER HB3 H N N 335 SER HG H N N 336 SER HXT H N N 337 THR N N N N 338 THR CA C N S 339 THR C C N N 340 THR O O N N 341 THR CB C N R 342 THR OG1 O N N 343 THR CG2 C N N 344 THR OXT O N N 345 THR H H N N 346 THR H2 H N N 347 THR HA H N N 348 THR HB H N N 349 THR HG1 H N N 350 THR HG21 H N N 351 THR HG22 H N N 352 THR HG23 H N N 353 THR HXT H N N 354 TRP N N N N 355 TRP CA C N S 356 TRP C C N N 357 TRP O O N N 358 TRP CB C N N 359 TRP CG C Y N 360 TRP CD1 C Y N 361 TRP CD2 C Y N 362 TRP NE1 N Y N 363 TRP CE2 C Y N 364 TRP CE3 C Y N 365 TRP CZ2 C Y N 366 TRP CZ3 C Y N 367 TRP CH2 C Y N 368 TRP OXT O N N 369 TRP H H N N 370 TRP H2 H N N 371 TRP HA H N N 372 TRP HB2 H N N 373 TRP HB3 H N N 374 TRP HD1 H N N 375 TRP HE1 H N N 376 TRP HE3 H N N 377 TRP HZ2 H N N 378 TRP HZ3 H N N 379 TRP HH2 H N N 380 TRP HXT H N N 381 TYR N N N N 382 TYR CA C N S 383 TYR C C N N 384 TYR O O N N 385 TYR CB C N N 386 TYR CG C Y N 387 TYR CD1 C Y N 388 TYR CD2 C Y N 389 TYR CE1 C Y N 390 TYR CE2 C Y N 391 TYR CZ C Y N 392 TYR OH O N N 393 TYR OXT O N N 394 TYR H H N N 395 TYR H2 H N N 396 TYR HA H N N 397 TYR HB2 H N N 398 TYR HB3 H N N 399 TYR HD1 H N N 400 TYR HD2 H N N 401 TYR HE1 H N N 402 TYR HE2 H N N 403 TYR HH H N N 404 TYR HXT H N N 405 VAL N N N N 406 VAL CA C N S 407 VAL C C N N 408 VAL O O N N 409 VAL CB C N N 410 VAL CG1 C N N 411 VAL CG2 C N N 412 VAL OXT O N N 413 VAL H H N N 414 VAL H2 H N N 415 VAL HA H N N 416 VAL HB H N N 417 VAL HG11 H N N 418 VAL HG12 H N N 419 VAL HG13 H N N 420 VAL HG21 H N N 421 VAL HG22 H N N 422 VAL HG23 H N N 423 VAL HXT H N N 424 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BU1 C1 C2 sing N N 70 BU1 C1 O5 sing N N 71 BU1 C1 H11 sing N N 72 BU1 C1 H12 sing N N 73 BU1 C2 C3 sing N N 74 BU1 C2 H21 sing N N 75 BU1 C2 H22 sing N N 76 BU1 C3 C4 sing N N 77 BU1 C3 H31 sing N N 78 BU1 C3 H32 sing N N 79 BU1 C4 O6 sing N N 80 BU1 C4 H41 sing N N 81 BU1 C4 H42 sing N N 82 BU1 O5 HO5 sing N N 83 BU1 O6 HO6 sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 GLN N CA sing N N 98 GLN N H sing N N 99 GLN N H2 sing N N 100 GLN CA C sing N N 101 GLN CA CB sing N N 102 GLN CA HA sing N N 103 GLN C O doub N N 104 GLN C OXT sing N N 105 GLN CB CG sing N N 106 GLN CB HB2 sing N N 107 GLN CB HB3 sing N N 108 GLN CG CD sing N N 109 GLN CG HG2 sing N N 110 GLN CG HG3 sing N N 111 GLN CD OE1 doub N N 112 GLN CD NE2 sing N N 113 GLN NE2 HE21 sing N N 114 GLN NE2 HE22 sing N N 115 GLN OXT HXT sing N N 116 GLU N CA sing N N 117 GLU N H sing N N 118 GLU N H2 sing N N 119 GLU CA C sing N N 120 GLU CA CB sing N N 121 GLU CA HA sing N N 122 GLU C O doub N N 123 GLU C OXT sing N N 124 GLU CB CG sing N N 125 GLU CB HB2 sing N N 126 GLU CB HB3 sing N N 127 GLU CG CD sing N N 128 GLU CG HG2 sing N N 129 GLU CG HG3 sing N N 130 GLU CD OE1 doub N N 131 GLU CD OE2 sing N N 132 GLU OE2 HE2 sing N N 133 GLU OXT HXT sing N N 134 GLY N CA sing N N 135 GLY N H sing N N 136 GLY N H2 sing N N 137 GLY CA C sing N N 138 GLY CA HA2 sing N N 139 GLY CA HA3 sing N N 140 GLY C O doub N N 141 GLY C OXT sing N N 142 GLY OXT HXT sing N N 143 HIS N CA sing N N 144 HIS N H sing N N 145 HIS N H2 sing N N 146 HIS CA C sing N N 147 HIS CA CB sing N N 148 HIS CA HA sing N N 149 HIS C O doub N N 150 HIS C OXT sing N N 151 HIS CB CG sing N N 152 HIS CB HB2 sing N N 153 HIS CB HB3 sing N N 154 HIS CG ND1 sing Y N 155 HIS CG CD2 doub Y N 156 HIS ND1 CE1 doub Y N 157 HIS ND1 HD1 sing N N 158 HIS CD2 NE2 sing Y N 159 HIS CD2 HD2 sing N N 160 HIS CE1 NE2 sing Y N 161 HIS CE1 HE1 sing N N 162 HIS NE2 HE2 sing N N 163 HIS OXT HXT sing N N 164 HOH O H1 sing N N 165 HOH O H2 sing N N 166 ILE N CA sing N N 167 ILE N H sing N N 168 ILE N H2 sing N N 169 ILE CA C sing N N 170 ILE CA CB sing N N 171 ILE CA HA sing N N 172 ILE C O doub N N 173 ILE C OXT sing N N 174 ILE CB CG1 sing N N 175 ILE CB CG2 sing N N 176 ILE CB HB sing N N 177 ILE CG1 CD1 sing N N 178 ILE CG1 HG12 sing N N 179 ILE CG1 HG13 sing N N 180 ILE CG2 HG21 sing N N 181 ILE CG2 HG22 sing N N 182 ILE CG2 HG23 sing N N 183 ILE CD1 HD11 sing N N 184 ILE CD1 HD12 sing N N 185 ILE CD1 HD13 sing N N 186 ILE OXT HXT sing N N 187 LEU N CA sing N N 188 LEU N H sing N N 189 LEU N H2 sing N N 190 LEU CA C sing N N 191 LEU CA CB sing N N 192 LEU CA HA sing N N 193 LEU C O doub N N 194 LEU C OXT sing N N 195 LEU CB CG sing N N 196 LEU CB HB2 sing N N 197 LEU CB HB3 sing N N 198 LEU CG CD1 sing N N 199 LEU CG CD2 sing N N 200 LEU CG HG sing N N 201 LEU CD1 HD11 sing N N 202 LEU CD1 HD12 sing N N 203 LEU CD1 HD13 sing N N 204 LEU CD2 HD21 sing N N 205 LEU CD2 HD22 sing N N 206 LEU CD2 HD23 sing N N 207 LEU OXT HXT sing N N 208 LYS N CA sing N N 209 LYS N H sing N N 210 LYS N H2 sing N N 211 LYS CA C sing N N 212 LYS CA CB sing N N 213 LYS CA HA sing N N 214 LYS C O doub N N 215 LYS C OXT sing N N 216 LYS CB CG sing N N 217 LYS CB HB2 sing N N 218 LYS CB HB3 sing N N 219 LYS CG CD sing N N 220 LYS CG HG2 sing N N 221 LYS CG HG3 sing N N 222 LYS CD CE sing N N 223 LYS CD HD2 sing N N 224 LYS CD HD3 sing N N 225 LYS CE NZ sing N N 226 LYS CE HE2 sing N N 227 LYS CE HE3 sing N N 228 LYS NZ HZ1 sing N N 229 LYS NZ HZ2 sing N N 230 LYS NZ HZ3 sing N N 231 LYS OXT HXT sing N N 232 MET N CA sing N N 233 MET N H sing N N 234 MET N H2 sing N N 235 MET CA C sing N N 236 MET CA CB sing N N 237 MET CA HA sing N N 238 MET C O doub N N 239 MET C OXT sing N N 240 MET CB CG sing N N 241 MET CB HB2 sing N N 242 MET CB HB3 sing N N 243 MET CG SD sing N N 244 MET CG HG2 sing N N 245 MET CG HG3 sing N N 246 MET SD CE sing N N 247 MET CE HE1 sing N N 248 MET CE HE2 sing N N 249 MET CE HE3 sing N N 250 MET OXT HXT sing N N 251 PBP CH CR sing N N 252 PBP CH HH1 sing N N 253 PBP CH HH2 sing N N 254 PBP CG CD1 doub Y N 255 PBP CG CD2 sing Y N 256 PBP CG CR sing N N 257 PBP CD1 CE1 sing Y N 258 PBP CD1 HD1 sing N N 259 PBP CE1 CZ doub Y N 260 PBP CE1 HE1 sing N N 261 PBP CD2 CE2 doub Y N 262 PBP CD2 HD2 sing N N 263 PBP CE2 CZ sing Y N 264 PBP CE2 HE2 sing N N 265 PBP CZ BR sing N N 266 PBP CR O doub N N 267 PBP CH BR2 sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PRO N CA sing N N 292 PRO N CD sing N N 293 PRO N H sing N N 294 PRO CA C sing N N 295 PRO CA CB sing N N 296 PRO CA HA sing N N 297 PRO C O doub N N 298 PRO C OXT sing N N 299 PRO CB CG sing N N 300 PRO CB HB2 sing N N 301 PRO CB HB3 sing N N 302 PRO CG CD sing N N 303 PRO CG HG2 sing N N 304 PRO CG HG3 sing N N 305 PRO CD HD2 sing N N 306 PRO CD HD3 sing N N 307 PRO OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PSJ _pdbx_initial_refinement_model.details 'ACIDIC PLA2 (PDB ENTRY 1PSJ)' # _atom_sites.entry_id 1BK9 _atom_sites.fract_transf_matrix[1][1] 0.012074 _atom_sites.fract_transf_matrix[1][2] 0.006971 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013942 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030488 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CA H N O S # loop_