data_1BKV # _entry.id 1BKV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BKV pdb_00001bkv 10.2210/pdb1bkv/pdb WWPDB D_1000171873 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-02-16 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BKV _pdbx_database_status.recvd_initial_deposition_date 1998-07-13 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kramer, R.Z.' 1 'Bella, J.' 2 'Mayville, P.' 3 'Brodsky, B.' 4 'Berman, H.M.' 5 # _citation.id primary _citation.title 'Sequence dependent conformational variations of collagen triple-helical structure.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 6 _citation.page_first 454 _citation.page_last 457 _citation.year 1999 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10331873 _citation.pdbx_database_id_DOI 10.1038/8259 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kramer, R.Z.' 1 ? primary 'Bella, J.' 2 ? primary 'Mayville, P.' 3 ? primary 'Brodsky, B.' 4 ? primary 'Berman, H.M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man T3-785 2686.908 3 ? ? ? 'SYNTHETIC PEPTIDE CONTAINS REGION FROM HUMAN TYPE III COLLAGEN' 2 non-polymer syn 'ACETIC ACID' 60.052 5 ? ? ? ? 3 water nat water 18.015 111 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'P(HYP)GP(HYP)GP(HYP)GITGARGLAGP(HYP)GP(HYP)GP(HYP)GP(HYP)G' _entity_poly.pdbx_seq_one_letter_code_can PPGPPGPPGITGARGLAGPPGPPGPPGPPG _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETIC ACID' ACY 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 HYP n 1 3 GLY n 1 4 PRO n 1 5 HYP n 1 6 GLY n 1 7 PRO n 1 8 HYP n 1 9 GLY n 1 10 ILE n 1 11 THR n 1 12 GLY n 1 13 ALA n 1 14 ARG n 1 15 GLY n 1 16 LEU n 1 17 ALA n 1 18 GLY n 1 19 PRO n 1 20 HYP n 1 21 GLY n 1 22 PRO n 1 23 HYP n 1 24 GLY n 1 25 PRO n 1 26 HYP n 1 27 GLY n 1 28 PRO n 1 29 HYP n 1 30 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'MODEL PEPTIDE CONTAINING BIOLOGICAL SEQUENCE WAS CHEMICALLY SYNTHESIZED' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 ? ? ? A . n A 1 2 HYP 2 2 2 HYP HYP A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 HYP 5 5 5 HYP HYP A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 HYP 8 8 8 HYP HYP A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 HYP 20 20 20 HYP HYP A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 HYP 23 23 23 HYP HYP A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 HYP 26 26 26 HYP HYP A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 HYP 29 29 29 HYP HYP A . n A 1 30 GLY 30 30 30 GLY GLY A . n B 1 1 PRO 1 31 31 PRO PRO B . n B 1 2 HYP 2 32 32 HYP HYP B . n B 1 3 GLY 3 33 33 GLY GLY B . n B 1 4 PRO 4 34 34 PRO PRO B . n B 1 5 HYP 5 35 35 HYP HYP B . n B 1 6 GLY 6 36 36 GLY GLY B . n B 1 7 PRO 7 37 37 PRO PRO B . n B 1 8 HYP 8 38 38 HYP HYP B . n B 1 9 GLY 9 39 39 GLY GLY B . n B 1 10 ILE 10 40 40 ILE ILE B . n B 1 11 THR 11 41 41 THR THR B . n B 1 12 GLY 12 42 42 GLY GLY B . n B 1 13 ALA 13 43 43 ALA ALA B . n B 1 14 ARG 14 44 44 ARG ARG B . n B 1 15 GLY 15 45 45 GLY GLY B . n B 1 16 LEU 16 46 46 LEU LEU B . n B 1 17 ALA 17 47 47 ALA ALA B . n B 1 18 GLY 18 48 48 GLY GLY B . n B 1 19 PRO 19 49 49 PRO PRO B . n B 1 20 HYP 20 50 50 HYP HYP B . n B 1 21 GLY 21 51 51 GLY GLY B . n B 1 22 PRO 22 52 52 PRO PRO B . n B 1 23 HYP 23 53 53 HYP HYP B . n B 1 24 GLY 24 54 54 GLY GLY B . n B 1 25 PRO 25 55 55 PRO PRO B . n B 1 26 HYP 26 56 56 HYP HYP B . n B 1 27 GLY 27 57 57 GLY GLY B . n B 1 28 PRO 28 58 58 PRO PRO B . n B 1 29 HYP 29 59 59 HYP HYP B . n B 1 30 GLY 30 60 60 GLY GLY B . n C 1 1 PRO 1 61 61 PRO PRO C . n C 1 2 HYP 2 62 62 HYP HYP C . n C 1 3 GLY 3 63 63 GLY GLY C . n C 1 4 PRO 4 64 64 PRO PRO C . n C 1 5 HYP 5 65 65 HYP HYP C . n C 1 6 GLY 6 66 66 GLY GLY C . n C 1 7 PRO 7 67 67 PRO PRO C . n C 1 8 HYP 8 68 68 HYP HYP C . n C 1 9 GLY 9 69 69 GLY GLY C . n C 1 10 ILE 10 70 70 ILE ILE C . n C 1 11 THR 11 71 71 THR THR C . n C 1 12 GLY 12 72 72 GLY GLY C . n C 1 13 ALA 13 73 73 ALA ALA C . n C 1 14 ARG 14 74 74 ARG ARG C . n C 1 15 GLY 15 75 75 GLY GLY C . n C 1 16 LEU 16 76 76 LEU LEU C . n C 1 17 ALA 17 77 77 ALA ALA C . n C 1 18 GLY 18 78 78 GLY GLY C . n C 1 19 PRO 19 79 79 PRO PRO C . n C 1 20 HYP 20 80 80 HYP HYP C . n C 1 21 GLY 21 81 81 GLY GLY C . n C 1 22 PRO 22 82 82 PRO PRO C . n C 1 23 HYP 23 83 83 HYP HYP C . n C 1 24 GLY 24 84 84 GLY GLY C . n C 1 25 PRO 25 85 85 PRO PRO C . n C 1 26 HYP 26 86 86 HYP HYP C . n C 1 27 GLY 27 87 87 GLY GLY C . n C 1 28 PRO 28 88 88 PRO PRO C . n C 1 29 HYP 29 89 89 HYP HYP C . n C 1 30 GLY 30 90 90 GLY GLY C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ACY 1 401 401 ACY ACY B . E 2 ACY 1 403 403 ACY ACY B . F 2 ACY 1 404 404 ACY ACY B . G 2 ACY 1 405 405 ACY ACY B . H 2 ACY 1 402 402 ACY ACY C . I 3 HOH 1 113 113 HOH HOH A . I 3 HOH 2 114 114 HOH HOH A . I 3 HOH 3 123 123 HOH HOH A . I 3 HOH 4 126 126 HOH HOH A . I 3 HOH 5 129 129 HOH HOH A . I 3 HOH 6 134 134 HOH HOH A . I 3 HOH 7 136 136 HOH HOH A . I 3 HOH 8 140 140 HOH HOH A . I 3 HOH 9 142 142 HOH HOH A . I 3 HOH 10 143 143 HOH HOH A . I 3 HOH 11 144 144 HOH HOH A . I 3 HOH 12 147 147 HOH HOH A . I 3 HOH 13 150 150 HOH HOH A . I 3 HOH 14 157 157 HOH HOH A . I 3 HOH 15 160 160 HOH HOH A . I 3 HOH 16 162 162 HOH HOH A . I 3 HOH 17 163 163 HOH HOH A . I 3 HOH 18 164 164 HOH HOH A . I 3 HOH 19 168 168 HOH HOH A . I 3 HOH 20 171 171 HOH HOH A . I 3 HOH 21 175 175 HOH HOH A . I 3 HOH 22 177 177 HOH HOH A . I 3 HOH 23 179 179 HOH HOH A . I 3 HOH 24 182 182 HOH HOH A . I 3 HOH 25 185 185 HOH HOH A . I 3 HOH 26 186 186 HOH HOH A . I 3 HOH 27 189 189 HOH HOH A . I 3 HOH 28 191 191 HOH HOH A . I 3 HOH 29 196 196 HOH HOH A . I 3 HOH 30 206 206 HOH HOH A . I 3 HOH 31 211 211 HOH HOH A . J 3 HOH 1 101 101 HOH HOH B . J 3 HOH 2 104 104 HOH HOH B . J 3 HOH 3 105 105 HOH HOH B . J 3 HOH 4 106 106 HOH HOH B . J 3 HOH 5 108 108 HOH HOH B . J 3 HOH 6 111 111 HOH HOH B . J 3 HOH 7 112 112 HOH HOH B . J 3 HOH 8 116 116 HOH HOH B . J 3 HOH 9 118 118 HOH HOH B . J 3 HOH 10 119 119 HOH HOH B . J 3 HOH 11 122 122 HOH HOH B . J 3 HOH 12 124 124 HOH HOH B . J 3 HOH 13 125 125 HOH HOH B . J 3 HOH 14 127 127 HOH HOH B . J 3 HOH 15 130 130 HOH HOH B . J 3 HOH 16 131 131 HOH HOH B . J 3 HOH 17 135 135 HOH HOH B . J 3 HOH 18 137 137 HOH HOH B . J 3 HOH 19 138 138 HOH HOH B . J 3 HOH 20 139 139 HOH HOH B . J 3 HOH 21 146 146 HOH HOH B . J 3 HOH 22 152 152 HOH HOH B . J 3 HOH 23 155 155 HOH HOH B . J 3 HOH 24 158 158 HOH HOH B . J 3 HOH 25 159 159 HOH HOH B . J 3 HOH 26 169 169 HOH HOH B . J 3 HOH 27 170 170 HOH HOH B . J 3 HOH 28 173 173 HOH HOH B . J 3 HOH 29 181 181 HOH HOH B . J 3 HOH 30 183 183 HOH HOH B . J 3 HOH 31 187 187 HOH HOH B . J 3 HOH 32 188 188 HOH HOH B . J 3 HOH 33 190 190 HOH HOH B . J 3 HOH 34 197 197 HOH HOH B . J 3 HOH 35 198 198 HOH HOH B . J 3 HOH 36 199 199 HOH HOH B . J 3 HOH 37 200 200 HOH HOH B . J 3 HOH 38 203 203 HOH HOH B . J 3 HOH 39 204 204 HOH HOH B . J 3 HOH 40 207 207 HOH HOH B . J 3 HOH 41 209 209 HOH HOH B . K 3 HOH 1 102 102 HOH HOH C . K 3 HOH 2 103 103 HOH HOH C . K 3 HOH 3 107 107 HOH HOH C . K 3 HOH 4 109 109 HOH HOH C . K 3 HOH 5 110 110 HOH HOH C . K 3 HOH 6 115 115 HOH HOH C . K 3 HOH 7 117 117 HOH HOH C . K 3 HOH 8 120 120 HOH HOH C . K 3 HOH 9 121 121 HOH HOH C . K 3 HOH 10 128 128 HOH HOH C . K 3 HOH 11 132 132 HOH HOH C . K 3 HOH 12 133 133 HOH HOH C . K 3 HOH 13 141 141 HOH HOH C . K 3 HOH 14 145 145 HOH HOH C . K 3 HOH 15 148 148 HOH HOH C . K 3 HOH 16 149 149 HOH HOH C . K 3 HOH 17 151 151 HOH HOH C . K 3 HOH 18 153 153 HOH HOH C . K 3 HOH 19 154 154 HOH HOH C . K 3 HOH 20 156 156 HOH HOH C . K 3 HOH 21 161 161 HOH HOH C . K 3 HOH 22 165 165 HOH HOH C . K 3 HOH 23 166 166 HOH HOH C . K 3 HOH 24 167 167 HOH HOH C . K 3 HOH 25 172 172 HOH HOH C . K 3 HOH 26 174 174 HOH HOH C . K 3 HOH 27 176 176 HOH HOH C . K 3 HOH 28 178 178 HOH HOH C . K 3 HOH 29 180 180 HOH HOH C . K 3 HOH 30 184 184 HOH HOH C . K 3 HOH 31 192 192 HOH HOH C . K 3 HOH 32 193 193 HOH HOH C . K 3 HOH 33 194 194 HOH HOH C . K 3 HOH 34 195 195 HOH HOH C . K 3 HOH 35 201 201 HOH HOH C . K 3 HOH 36 202 202 HOH HOH C . K 3 HOH 37 205 205 HOH HOH C . K 3 HOH 38 208 208 HOH HOH C . K 3 HOH 39 210 210 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B ACY 401 ? O ? D ACY 1 O 2 1 N 1 B ACY 405 ? O ? G ACY 1 O # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 0.3 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing 0.3 ? 4 # _cell.entry_id 1BKV _cell.length_a 117.090 _cell.length_b 15.629 _cell.length_c 39.715 _cell.angle_alpha 90.00 _cell.angle_beta 104.46 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1BKV _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1BKV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 43.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 8.50' # _diffrn.id 1 _diffrn.ambient_temp 108.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 1996-12 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BKV _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 4853 _reflns.number_all ? _reflns.percent_possible_obs 95.9 _reflns.pdbx_Rmerge_I_obs 0.0530000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.06 _reflns_shell.percent_possible_all 93.0 _reflns_shell.Rmerge_I_obs 0.1330000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BKV _refine.ls_number_reflns_obs 4643 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 92.0 _refine.ls_R_factor_obs 0.2280000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2280000 _refine.ls_R_factor_R_free 0.2770000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.600 _refine.ls_number_reflns_R_free 486 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 36.40 _refine.aniso_B[1][1] -6.57600 _refine.aniso_B[2][2] 9.38300 _refine.aniso_B[3][3] -2.80800 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] -15.60100 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;ADDITIONAL PARAMETERS USED FOR HYDROXYPROLINE. THREE EXTREMELY STRONG REFLECTIONS (-3 1 1, 4 0 2, AND 5 1 0) WERE UNDERESTIMATED AND HENCE WERE EXCLUDED FROM REFINEMENT. ; _refine.pdbx_starting_model 'IDEALIZED 7-FOLD TRIPLE HELIX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 563 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 692 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.10 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.03 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.07 _refine_ls_shell.number_reflns_R_work 348 _refine_ls_shell.R_factor_R_work 0.2650000 _refine_ls_shell.percent_reflns_obs 90.00 _refine_ls_shell.R_factor_R_free 0.2810000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PROTEIN_REP.PARAM _pdbx_xplor_file.topol_file TOPHCSDX.PRO _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1BKV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1BKV _struct.title COLLAGEN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BKV _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'COLLAGEN, HYDROXYPROLINE, HYDROGEN BONDING, TRIPLE HELIX, TYPE III COLLAGEN, STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1BKV _struct_ref.pdbx_db_accession 1BKV _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BKV A 1 ? 30 ? 1BKV 1 ? 30 ? 1 30 2 1 1BKV B 1 ? 30 ? 1BKV 31 ? 60 ? 31 60 3 1 1BKV C 1 ? 30 ? 1BKV 61 ? 90 ? 61 90 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5250 ? 1 MORE -27 ? 1 'SSA (A^2)' 5260 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HYP 2 C ? ? ? 1_555 A GLY 3 N ? ? A HYP 2 A GLY 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A PRO 4 C ? ? ? 1_555 A HYP 5 N ? ? A PRO 4 A HYP 5 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale3 covale both ? A HYP 5 C ? ? ? 1_555 A GLY 6 N ? ? A HYP 5 A GLY 6 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A PRO 7 C ? ? ? 1_555 A HYP 8 N ? ? A PRO 7 A HYP 8 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale5 covale both ? A HYP 8 C ? ? ? 1_555 A GLY 9 N ? ? A HYP 8 A GLY 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A PRO 19 C ? ? ? 1_555 A HYP 20 N ? ? A PRO 19 A HYP 20 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale7 covale both ? A HYP 20 C ? ? ? 1_555 A GLY 21 N ? ? A HYP 20 A GLY 21 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A PRO 22 C ? ? ? 1_555 A HYP 23 N ? ? A PRO 22 A HYP 23 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale9 covale both ? A HYP 23 C ? ? ? 1_555 A GLY 24 N ? ? A HYP 23 A GLY 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale10 covale both ? A PRO 25 C ? ? ? 1_555 A HYP 26 N ? ? A PRO 25 A HYP 26 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale11 covale both ? A HYP 26 C ? ? ? 1_555 A GLY 27 N ? ? A HYP 26 A GLY 27 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? A PRO 28 C ? ? ? 1_555 A HYP 29 N ? ? A PRO 28 A HYP 29 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale13 covale both ? A HYP 29 C ? ? ? 1_555 A GLY 30 N ? ? A HYP 29 A GLY 30 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? B PRO 1 C ? ? ? 1_555 B HYP 2 N ? ? B PRO 31 B HYP 32 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale15 covale both ? B HYP 2 C ? ? ? 1_555 B GLY 3 N ? ? B HYP 32 B GLY 33 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale16 covale both ? B PRO 4 C ? ? ? 1_555 B HYP 5 N ? ? B PRO 34 B HYP 35 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale17 covale both ? B HYP 5 C ? ? ? 1_555 B GLY 6 N ? ? B HYP 35 B GLY 36 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale18 covale both ? B PRO 7 C ? ? ? 1_555 B HYP 8 N ? ? B PRO 37 B HYP 38 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale19 covale both ? B HYP 8 C ? ? ? 1_555 B GLY 9 N ? ? B HYP 38 B GLY 39 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale20 covale both ? B PRO 19 C ? ? ? 1_555 B HYP 20 N ? ? B PRO 49 B HYP 50 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale21 covale both ? B HYP 20 C ? ? ? 1_555 B GLY 21 N ? ? B HYP 50 B GLY 51 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale22 covale both ? B PRO 22 C ? ? ? 1_555 B HYP 23 N ? ? B PRO 52 B HYP 53 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale23 covale both ? B HYP 23 C ? ? ? 1_555 B GLY 24 N ? ? B HYP 53 B GLY 54 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale24 covale both ? B PRO 25 C ? ? ? 1_555 B HYP 26 N ? ? B PRO 55 B HYP 56 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale25 covale both ? B HYP 26 C ? ? ? 1_555 B GLY 27 N ? ? B HYP 56 B GLY 57 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale26 covale both ? B PRO 28 C ? ? ? 1_555 B HYP 29 N ? ? B PRO 58 B HYP 59 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale27 covale both ? B HYP 29 C ? ? ? 1_555 B GLY 30 N ? ? B HYP 59 B GLY 60 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale28 covale both ? C PRO 1 C ? ? ? 1_555 C HYP 2 N ? ? C PRO 61 C HYP 62 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale29 covale both ? C HYP 2 C ? ? ? 1_555 C GLY 3 N ? ? C HYP 62 C GLY 63 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale30 covale both ? C PRO 4 C ? ? ? 1_555 C HYP 5 N ? ? C PRO 64 C HYP 65 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale31 covale both ? C HYP 5 C ? ? ? 1_555 C GLY 6 N ? ? C HYP 65 C GLY 66 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale32 covale both ? C PRO 7 C ? ? ? 1_555 C HYP 8 N ? ? C PRO 67 C HYP 68 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale33 covale both ? C HYP 8 C ? ? ? 1_555 C GLY 9 N ? ? C HYP 68 C GLY 69 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale34 covale both ? C PRO 19 C ? ? ? 1_555 C HYP 20 N ? ? C PRO 79 C HYP 80 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale35 covale both ? C HYP 20 C ? ? ? 1_555 C GLY 21 N ? ? C HYP 80 C GLY 81 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale36 covale both ? C PRO 22 C ? ? ? 1_555 C HYP 23 N ? ? C PRO 82 C HYP 83 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale37 covale both ? C HYP 23 C ? ? ? 1_555 C GLY 24 N ? ? C HYP 83 C GLY 84 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale38 covale both ? C PRO 25 C ? ? ? 1_555 C HYP 26 N ? ? C PRO 85 C HYP 86 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale39 covale both ? C HYP 26 C ? ? ? 1_555 C GLY 27 N ? ? C HYP 86 C GLY 87 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale40 covale both ? C PRO 28 C ? ? ? 1_555 C HYP 29 N ? ? C PRO 88 C HYP 89 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale41 covale both ? C HYP 29 C ? ? ? 1_555 C GLY 30 N ? ? C HYP 89 C GLY 90 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 28 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 58 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 HYP _struct_mon_prot_cis.pdbx_label_seq_id_2 29 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 HYP _struct_mon_prot_cis.pdbx_auth_seq_id_2 59 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.04 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B ACY 401 ? 5 'BINDING SITE FOR RESIDUE ACY B 401' AC2 Software C ACY 402 ? 5 'BINDING SITE FOR RESIDUE ACY C 402' AC3 Software B ACY 403 ? 4 'BINDING SITE FOR RESIDUE ACY B 403' AC4 Software B ACY 404 ? 6 'BINDING SITE FOR RESIDUE ACY B 404' AC5 Software B ACY 405 ? 6 'BINDING SITE FOR RESIDUE ACY B 405' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG B 14 ? ARG B 44 . ? 1_555 ? 2 AC1 5 HOH J . ? HOH B 112 . ? 2_656 ? 3 AC1 5 HOH J . ? HOH B 125 . ? 2_656 ? 4 AC1 5 ACY G . ? ACY B 405 . ? 2_656 ? 5 AC1 5 ACY G . ? ACY B 405 . ? 1_555 ? 6 AC2 5 ARG A 14 ? ARG A 14 . ? 1_565 ? 7 AC2 5 ILE C 10 ? ILE C 70 . ? 1_555 ? 8 AC2 5 THR C 11 ? THR C 71 . ? 1_555 ? 9 AC2 5 HOH K . ? HOH C 145 . ? 1_555 ? 10 AC2 5 HOH K . ? HOH C 195 . ? 1_555 ? 11 AC3 4 HOH J . ? HOH B 111 . ? 1_555 ? 12 AC3 4 ACY F . ? ACY B 404 . ? 2_655 ? 13 AC3 4 HOH K . ? HOH C 117 . ? 1_545 ? 14 AC3 4 HOH K . ? HOH C 210 . ? 1_545 ? 15 AC4 6 LEU A 16 ? LEU A 16 . ? 2_645 ? 16 AC4 6 GLY B 21 ? GLY B 51 . ? 1_555 ? 17 AC4 6 PRO B 22 ? PRO B 52 . ? 1_555 ? 18 AC4 6 HYP B 23 ? HYP B 53 . ? 1_555 ? 19 AC4 6 HOH J . ? HOH B 119 . ? 1_555 ? 20 AC4 6 ACY E . ? ACY B 403 . ? 2_655 ? 21 AC5 6 ALA B 13 ? ALA B 43 . ? 1_555 ? 22 AC5 6 ARG B 14 ? ARG B 44 . ? 1_555 ? 23 AC5 6 HOH J . ? HOH B 125 . ? 2_656 ? 24 AC5 6 HOH J . ? HOH B 131 . ? 2_656 ? 25 AC5 6 ACY D . ? ACY B 401 . ? 2_656 ? 26 AC5 6 ACY D . ? ACY B 401 . ? 1_555 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HYP 2 A HYP 2 ? PRO 4-HYDROXYPROLINE 2 A HYP 5 A HYP 5 ? PRO 4-HYDROXYPROLINE 3 A HYP 8 A HYP 8 ? PRO 4-HYDROXYPROLINE 4 A HYP 20 A HYP 20 ? PRO 4-HYDROXYPROLINE 5 A HYP 23 A HYP 23 ? PRO 4-HYDROXYPROLINE 6 A HYP 26 A HYP 26 ? PRO 4-HYDROXYPROLINE 7 A HYP 29 A HYP 29 ? PRO 4-HYDROXYPROLINE 8 B HYP 2 B HYP 32 ? PRO 4-HYDROXYPROLINE 9 B HYP 5 B HYP 35 ? PRO 4-HYDROXYPROLINE 10 B HYP 8 B HYP 38 ? PRO 4-HYDROXYPROLINE 11 B HYP 20 B HYP 50 ? PRO 4-HYDROXYPROLINE 12 B HYP 23 B HYP 53 ? PRO 4-HYDROXYPROLINE 13 B HYP 26 B HYP 56 ? PRO 4-HYDROXYPROLINE 14 B HYP 29 B HYP 59 ? PRO 4-HYDROXYPROLINE 15 C HYP 2 C HYP 62 ? PRO 4-HYDROXYPROLINE 16 C HYP 5 C HYP 65 ? PRO 4-HYDROXYPROLINE 17 C HYP 8 C HYP 68 ? PRO 4-HYDROXYPROLINE 18 C HYP 20 C HYP 80 ? PRO 4-HYDROXYPROLINE 19 C HYP 23 C HYP 83 ? PRO 4-HYDROXYPROLINE 20 C HYP 26 C HYP 86 ? PRO 4-HYDROXYPROLINE 21 C HYP 29 C HYP 89 ? PRO 4-HYDROXYPROLINE # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B ACY 401 ? D ACY . 2 1 B ACY 401 ? D ACY . 3 1 B ACY 405 ? G ACY . 4 1 B ACY 405 ? G ACY . 5 1 A HOH 134 ? I HOH . 6 1 A HOH 189 ? I HOH . 7 1 A HOH 211 ? I HOH . # _pdbx_entry_details.entry_id 1BKV _pdbx_entry_details.compound_details ;HYDROGEN BONDS BETWEEN PEPTIDE CHAINS FOLLOW THE RICH AND CRICK MODEL II FOR COLLAGEN. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;TWO ACETIC ACID MOLECULES SIT ON A CRYSTALLOGRAPHIC TWO FOLD. AS A RESULT THE ASYMMETRIC UNIT FOR THESE TWO ACETIC ACIDS CONTAIN ONLY ONE OXYGEN ATOM EACH. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id PRO _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id PRO _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACY C C N N 1 ACY O O N N 2 ACY OXT O N N 3 ACY CH3 C N N 4 ACY HXT H N N 5 ACY H1 H N N 6 ACY H2 H N N 7 ACY H3 H N N 8 ALA N N N N 9 ALA CA C N S 10 ALA C C N N 11 ALA O O N N 12 ALA CB C N N 13 ALA OXT O N N 14 ALA H H N N 15 ALA H2 H N N 16 ALA HA H N N 17 ALA HB1 H N N 18 ALA HB2 H N N 19 ALA HB3 H N N 20 ALA HXT H N N 21 ARG N N N N 22 ARG CA C N S 23 ARG C C N N 24 ARG O O N N 25 ARG CB C N N 26 ARG CG C N N 27 ARG CD C N N 28 ARG NE N N N 29 ARG CZ C N N 30 ARG NH1 N N N 31 ARG NH2 N N N 32 ARG OXT O N N 33 ARG H H N N 34 ARG H2 H N N 35 ARG HA H N N 36 ARG HB2 H N N 37 ARG HB3 H N N 38 ARG HG2 H N N 39 ARG HG3 H N N 40 ARG HD2 H N N 41 ARG HD3 H N N 42 ARG HE H N N 43 ARG HH11 H N N 44 ARG HH12 H N N 45 ARG HH21 H N N 46 ARG HH22 H N N 47 ARG HXT H N N 48 GLY N N N N 49 GLY CA C N N 50 GLY C C N N 51 GLY O O N N 52 GLY OXT O N N 53 GLY H H N N 54 GLY H2 H N N 55 GLY HA2 H N N 56 GLY HA3 H N N 57 GLY HXT H N N 58 HOH O O N N 59 HOH H1 H N N 60 HOH H2 H N N 61 HYP N N N N 62 HYP CA C N S 63 HYP C C N N 64 HYP O O N N 65 HYP CB C N N 66 HYP CG C N R 67 HYP CD C N N 68 HYP OD1 O N N 69 HYP OXT O N N 70 HYP H H N N 71 HYP HA H N N 72 HYP HB2 H N N 73 HYP HB3 H N N 74 HYP HG H N N 75 HYP HD22 H N N 76 HYP HD23 H N N 77 HYP HD1 H N N 78 HYP HXT H N N 79 ILE N N N N 80 ILE CA C N S 81 ILE C C N N 82 ILE O O N N 83 ILE CB C N S 84 ILE CG1 C N N 85 ILE CG2 C N N 86 ILE CD1 C N N 87 ILE OXT O N N 88 ILE H H N N 89 ILE H2 H N N 90 ILE HA H N N 91 ILE HB H N N 92 ILE HG12 H N N 93 ILE HG13 H N N 94 ILE HG21 H N N 95 ILE HG22 H N N 96 ILE HG23 H N N 97 ILE HD11 H N N 98 ILE HD12 H N N 99 ILE HD13 H N N 100 ILE HXT H N N 101 LEU N N N N 102 LEU CA C N S 103 LEU C C N N 104 LEU O O N N 105 LEU CB C N N 106 LEU CG C N N 107 LEU CD1 C N N 108 LEU CD2 C N N 109 LEU OXT O N N 110 LEU H H N N 111 LEU H2 H N N 112 LEU HA H N N 113 LEU HB2 H N N 114 LEU HB3 H N N 115 LEU HG H N N 116 LEU HD11 H N N 117 LEU HD12 H N N 118 LEU HD13 H N N 119 LEU HD21 H N N 120 LEU HD22 H N N 121 LEU HD23 H N N 122 LEU HXT H N N 123 PRO N N N N 124 PRO CA C N S 125 PRO C C N N 126 PRO O O N N 127 PRO CB C N N 128 PRO CG C N N 129 PRO CD C N N 130 PRO OXT O N N 131 PRO H H N N 132 PRO HA H N N 133 PRO HB2 H N N 134 PRO HB3 H N N 135 PRO HG2 H N N 136 PRO HG3 H N N 137 PRO HD2 H N N 138 PRO HD3 H N N 139 PRO HXT H N N 140 THR N N N N 141 THR CA C N S 142 THR C C N N 143 THR O O N N 144 THR CB C N R 145 THR OG1 O N N 146 THR CG2 C N N 147 THR OXT O N N 148 THR H H N N 149 THR H2 H N N 150 THR HA H N N 151 THR HB H N N 152 THR HG1 H N N 153 THR HG21 H N N 154 THR HG22 H N N 155 THR HG23 H N N 156 THR HXT H N N 157 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACY C O doub N N 1 ACY C OXT sing N N 2 ACY C CH3 sing N N 3 ACY OXT HXT sing N N 4 ACY CH3 H1 sing N N 5 ACY CH3 H2 sing N N 6 ACY CH3 H3 sing N N 7 ALA N CA sing N N 8 ALA N H sing N N 9 ALA N H2 sing N N 10 ALA CA C sing N N 11 ALA CA CB sing N N 12 ALA CA HA sing N N 13 ALA C O doub N N 14 ALA C OXT sing N N 15 ALA CB HB1 sing N N 16 ALA CB HB2 sing N N 17 ALA CB HB3 sing N N 18 ALA OXT HXT sing N N 19 ARG N CA sing N N 20 ARG N H sing N N 21 ARG N H2 sing N N 22 ARG CA C sing N N 23 ARG CA CB sing N N 24 ARG CA HA sing N N 25 ARG C O doub N N 26 ARG C OXT sing N N 27 ARG CB CG sing N N 28 ARG CB HB2 sing N N 29 ARG CB HB3 sing N N 30 ARG CG CD sing N N 31 ARG CG HG2 sing N N 32 ARG CG HG3 sing N N 33 ARG CD NE sing N N 34 ARG CD HD2 sing N N 35 ARG CD HD3 sing N N 36 ARG NE CZ sing N N 37 ARG NE HE sing N N 38 ARG CZ NH1 sing N N 39 ARG CZ NH2 doub N N 40 ARG NH1 HH11 sing N N 41 ARG NH1 HH12 sing N N 42 ARG NH2 HH21 sing N N 43 ARG NH2 HH22 sing N N 44 ARG OXT HXT sing N N 45 GLY N CA sing N N 46 GLY N H sing N N 47 GLY N H2 sing N N 48 GLY CA C sing N N 49 GLY CA HA2 sing N N 50 GLY CA HA3 sing N N 51 GLY C O doub N N 52 GLY C OXT sing N N 53 GLY OXT HXT sing N N 54 HOH O H1 sing N N 55 HOH O H2 sing N N 56 HYP N CA sing N N 57 HYP N CD sing N N 58 HYP N H sing N N 59 HYP CA C sing N N 60 HYP CA CB sing N N 61 HYP CA HA sing N N 62 HYP C O doub N N 63 HYP C OXT sing N N 64 HYP CB CG sing N N 65 HYP CB HB2 sing N N 66 HYP CB HB3 sing N N 67 HYP CG CD sing N N 68 HYP CG OD1 sing N N 69 HYP CG HG sing N N 70 HYP CD HD22 sing N N 71 HYP CD HD23 sing N N 72 HYP OD1 HD1 sing N N 73 HYP OXT HXT sing N N 74 ILE N CA sing N N 75 ILE N H sing N N 76 ILE N H2 sing N N 77 ILE CA C sing N N 78 ILE CA CB sing N N 79 ILE CA HA sing N N 80 ILE C O doub N N 81 ILE C OXT sing N N 82 ILE CB CG1 sing N N 83 ILE CB CG2 sing N N 84 ILE CB HB sing N N 85 ILE CG1 CD1 sing N N 86 ILE CG1 HG12 sing N N 87 ILE CG1 HG13 sing N N 88 ILE CG2 HG21 sing N N 89 ILE CG2 HG22 sing N N 90 ILE CG2 HG23 sing N N 91 ILE CD1 HD11 sing N N 92 ILE CD1 HD12 sing N N 93 ILE CD1 HD13 sing N N 94 ILE OXT HXT sing N N 95 LEU N CA sing N N 96 LEU N H sing N N 97 LEU N H2 sing N N 98 LEU CA C sing N N 99 LEU CA CB sing N N 100 LEU CA HA sing N N 101 LEU C O doub N N 102 LEU C OXT sing N N 103 LEU CB CG sing N N 104 LEU CB HB2 sing N N 105 LEU CB HB3 sing N N 106 LEU CG CD1 sing N N 107 LEU CG CD2 sing N N 108 LEU CG HG sing N N 109 LEU CD1 HD11 sing N N 110 LEU CD1 HD12 sing N N 111 LEU CD1 HD13 sing N N 112 LEU CD2 HD21 sing N N 113 LEU CD2 HD22 sing N N 114 LEU CD2 HD23 sing N N 115 LEU OXT HXT sing N N 116 PRO N CA sing N N 117 PRO N CD sing N N 118 PRO N H sing N N 119 PRO CA C sing N N 120 PRO CA CB sing N N 121 PRO CA HA sing N N 122 PRO C O doub N N 123 PRO C OXT sing N N 124 PRO CB CG sing N N 125 PRO CB HB2 sing N N 126 PRO CB HB3 sing N N 127 PRO CG CD sing N N 128 PRO CG HG2 sing N N 129 PRO CG HG3 sing N N 130 PRO CD HD2 sing N N 131 PRO CD HD3 sing N N 132 PRO OXT HXT sing N N 133 THR N CA sing N N 134 THR N H sing N N 135 THR N H2 sing N N 136 THR CA C sing N N 137 THR CA CB sing N N 138 THR CA HA sing N N 139 THR C O doub N N 140 THR C OXT sing N N 141 THR CB OG1 sing N N 142 THR CB CG2 sing N N 143 THR CB HB sing N N 144 THR OG1 HG1 sing N N 145 THR CG2 HG21 sing N N 146 THR CG2 HG22 sing N N 147 THR CG2 HG23 sing N N 148 THR OXT HXT sing N N 149 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'IDEALIZED 7-FOLD TRIPLE HELIX' # _atom_sites.entry_id 1BKV _atom_sites.fract_transf_matrix[1][1] 0.008540 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002202 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.063984 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026003 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_