HEADER COMPLEX (PHOSPHOTRANSFERASE/ADENOSINE) 01-JUL-97 1BKX TITLE A BINARY COMPLEX OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN TITLE 2 KINASE AND ADENOSINE FURTHER DEFINES CONFORMATIONAL FLEXIBILITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC SUBUNIT; COMPND 5 SYNONYM: CAPK, PKA; COMPND 6 EC: 2.7.1.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CONFORMATIONAL CHANGES, ELECTROSTATIC COMPLEMENTARITY, KEYWDS 2 PHOSPHORYLATION, PROTEIN KINASE, TRANSFERASE, COMPLEX KEYWDS 3 (PHOSPHOTRANSFERASE-ADENOSINE), PHOSPHOTRANSFERASE, COMPLEX KEYWDS 4 (PHOSPHOTRANSFERASE-ADENOSINE) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.NARAYANA,S.COX,N.XUONG,L.F.TEN EYCK,S.S.TAYLOR REVDAT 6 30-OCT-24 1BKX 1 REMARK REVDAT 5 29-MAY-24 1BKX 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL ATOM REVDAT 4 02-AUG-23 1BKX 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1BKX 1 VERSN REVDAT 2 01-APR-03 1BKX 1 JRNL REVDAT 1 18-MAR-98 1BKX 0 JRNL AUTH N.NARAYANA,S.COX,X.NGUYEN-HUU,L.F.TEN EYCK,S.S.TAYLOR JRNL TITL A BINARY COMPLEX OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT JRNL TITL 2 PROTEIN KINASE AND ADENOSINE FURTHER DEFINES CONFORMATIONAL JRNL TITL 3 FLEXIBILITY. JRNL REF STRUCTURE V. 5 921 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9261084 JRNL DOI 10.1016/S0969-2126(97)00246-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.NARAYANA,S.COX,S.SHALTIEL,S.S.TAYLOR,N.XUONG REMARK 1 TITL CRYSTAL STRUCTURE OF A POLYHISTIDINE-TAGGED RECOMBINANT REMARK 1 TITL 2 CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE COMPLEXED REMARK 1 TITL 3 WITH THE PEPTIDE INHIBITOR PKI(5-24) AND ADENOSINE REMARK 1 REF BIOCHEMISTRY V. 36 4438 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.ZHENG,D.R.KNIGHTON,L.F.TEN EYCK,R.KARLSSON,N.XUONG, REMARK 1 AUTH 2 S.S.TAYLOR,J.M.SOWADSKI REMARK 1 TITL CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT REMARK 1 TITL 2 PROTEIN KINASE COMPLEXED WITH MGATP AND PEPTIDE INHIBITOR REMARK 1 REF BIOCHEMISTRY V. 32 2154 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH F.W.HERBERG,S.M.BELL,S.S.TAYLOR REMARK 1 TITL EXPRESSION OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT REMARK 1 TITL 2 PROTEIN KINASE IN ESCHERICHIA COLI: MULTIPLE ISOZYMES REMARK 1 TITL 3 REFLECT DIFFERENT PHOSPHORYLATION STATES REMARK 1 REF PROTEIN ENG. V. 6 771 1993 REMARK 1 REFN ISSN 0269-2139 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.R.KNIGHTON,J.H.ZHENG,L.F.TEN EYCK,V.A.ASHFORD,N.H.XUONG, REMARK 1 AUTH 2 S.S.TAYLOR,J.M.SOWADSKI REMARK 1 TITL CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF CYCLIC REMARK 1 TITL 2 ADENOSINE MONOPHOSPHATE-DEPENDENT PROTEIN KINASE REMARK 1 REF SCIENCE V. 253 407 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 5 REMARK 1 AUTH D.R.KNIGHTON,J.H.ZHENG,L.F.TEN EYCK,N.H.XUONG,S.S.TAYLOR, REMARK 1 AUTH 2 J.M.SOWADSKI REMARK 1 TITL STRUCTURE OF A PEPTIDE INHIBITOR BOUND TO THE CATALYTIC REMARK 1 TITL 2 SUBUNIT OF CYCLIC ADENOSINE MONOPHOSPHATE-DEPENDENT PROTEIN REMARK 1 TITL 3 KINASE REMARK 1 REF SCIENCE V. 253 414 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 10720 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.340 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2190 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2050 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.340 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 10720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 45.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.020 ; 1.900 ; 2894 REMARK 3 BOND ANGLES (DEGREES) : 1.700 ; 12.000; 3891 REMARK 3 TORSION ANGLES (DEGREES) : 20.200; 0.000 ; 1700 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.010 ; 5.000 ; 75 REMARK 3 GENERAL PLANES (A) : 0.020 ; 14.000; 407 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 12.800; 0.900 ; 2859 REMARK 3 NON-BONDED CONTACTS (A) : 0.030 ; 30.000; 100 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.70 REMARK 3 BSOL : 654.5 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT GEOMETRY LIBRARY FILES REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : YES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-94 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : UCSD REMARK 200 DATA SCALING SOFTWARE : UCSD REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10720 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.20000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1CTP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RC.ADE BINARY COMPLEX CRYSTALS REMARK 280 WERE GROWN AT 4 C BY THE HANGING-DROP VAPOR DIFFUSION METHOD. REMARK 280 THE CRYSTALLIZATION DROPLET CONTAINED PROTEIN (0.5 MM), REMARK 280 ADENOSINE (3 MM) AND 2-METHYL-2,4-PENTANEDIOL (MPD; 4%) IN 100 REMARK 280 MM BICINE BUFFER AT PH 8.0. THE CRYSTALLIZATION WELL SOLUTION REMARK 280 WAS MADE UP OF 15% MPD AND 100 MM AMMONIUM-SULFATE IN BICINE REMARK 280 BUFFER (100 MM; PH 8.0). THE CRYSTALS GREW OVER THE COURSE OF 8- REMARK 280 12 WEEKS TO A FINAL SIZE OF 0.2 X 0.3 X 0.5 MM3., VAPOR REMARK 280 DIFFUSION - HANGING DROP, TEMPERATURE 277K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.36000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.36000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SEP A 10 REMARK 465 GLU A 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 13 CD GLU A 13 OE2 0.089 REMARK 500 GLU A 17 CD GLU A 17 OE2 0.082 REMARK 500 GLU A 24 CD GLU A 24 OE2 0.080 REMARK 500 GLU A 31 CD GLU A 31 OE1 0.110 REMARK 500 GLU A 64 CD GLU A 64 OE2 0.066 REMARK 500 GLU A 86 CD GLU A 86 OE2 0.082 REMARK 500 GLU A 91 CD GLU A 91 OE2 0.097 REMARK 500 GLU A 127 CD GLU A 127 OE2 0.075 REMARK 500 GLU A 140 CD GLU A 140 OE1 -0.071 REMARK 500 GLU A 140 CD GLU A 140 OE2 0.082 REMARK 500 GLU A 155 CD GLU A 155 OE2 0.081 REMARK 500 GLU A 203 CD GLU A 203 OE2 0.075 REMARK 500 GLU A 248 CD GLU A 248 OE2 0.080 REMARK 500 GLU A 311 CD GLU A 311 OE2 0.069 REMARK 500 GLU A 341 CD GLU A 341 OE2 0.074 REMARK 500 GLU A 346 CD GLU A 346 OE2 0.071 REMARK 500 GLU A 349 CD GLU A 349 OE2 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 41 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 75 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 175 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 184 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 241 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 264 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 290 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 290 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 301 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 301 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 PRO A 316 C - N - CD ANGL. DEV. = -29.9 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 328 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP A 329 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 329 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 13 -80.12 -96.92 REMARK 500 VAL A 15 47.15 -75.18 REMARK 500 LYS A 16 -23.38 -158.75 REMARK 500 PHE A 18 -77.25 -60.87 REMARK 500 LEU A 19 -36.98 -33.44 REMARK 500 LYS A 28 -82.05 -42.03 REMARK 500 GLU A 31 47.88 -85.71 REMARK 500 THR A 32 91.96 158.04 REMARK 500 GLN A 35 -130.36 -114.96 REMARK 500 ASN A 36 120.50 -20.39 REMARK 500 ILE A 46 -60.86 -97.54 REMARK 500 ARG A 56 139.12 -173.57 REMARK 500 GLU A 64 -97.95 -51.60 REMARK 500 LYS A 83 7.22 41.70 REMARK 500 GLN A 84 7.26 -45.65 REMARK 500 HIS A 87 -74.26 -70.70 REMARK 500 THR A 88 -16.13 -31.87 REMARK 500 ASN A 99 114.88 -164.90 REMARK 500 PHE A 100 148.00 -179.54 REMARK 500 ASN A 113 -63.14 14.58 REMARK 500 PHE A 129 -33.58 -34.46 REMARK 500 GLU A 140 -39.65 -24.33 REMARK 500 HIS A 142 -70.16 -41.62 REMARK 500 LEU A 157 -77.64 -51.76 REMARK 500 HIS A 158 -34.94 -28.88 REMARK 500 ARG A 165 -9.22 69.20 REMARK 500 GLN A 176 -2.98 -59.08 REMARK 500 ASP A 184 75.16 61.99 REMARK 500 ALA A 188 175.69 -41.89 REMARK 500 LYS A 189 109.65 178.05 REMARK 500 SER A 212 71.01 71.77 REMARK 500 LYS A 217 -36.31 -30.86 REMARK 500 TYR A 235 157.18 -38.66 REMARK 500 PHE A 239 129.19 -173.84 REMARK 500 SER A 262 170.75 -53.94 REMARK 500 LEU A 269 -85.49 -30.63 REMARK 500 ARG A 270 -3.58 -48.64 REMARK 500 LEU A 273 44.80 -60.06 REMARK 500 VAL A 275 2.55 -59.99 REMARK 500 THR A 278 44.26 -79.23 REMARK 500 LYS A 279 53.97 167.86 REMARK 500 TRP A 296 -33.97 -35.75 REMARK 500 GLN A 307 1.61 -60.23 REMARK 500 ASN A 326 2.73 -63.98 REMARK 500 ILE A 335 66.67 -104.64 REMARK 500 VAL A 337 60.57 -153.76 REMARK 500 SEP A 338 166.41 -22.10 REMARK 500 GLU A 341 91.11 -55.12 REMARK 500 CYS A 343 29.37 48.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AMP A 351 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 351 DBREF 1BKX A 1 350 UNP P05132 KAPCA_MOUSE 1 350 SEQADV 1BKX SEP A 10 UNP P05132 SER 10 CONFLICT SEQADV 1BKX TPO A 197 UNP P05132 THR 197 MODIFIED RESIDUE SEQADV 1BKX SEP A 338 UNP P05132 SER 338 MODIFIED RESIDUE SEQRES 1 A 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP GLU GLN GLU SEQRES 2 A 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 A 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 A 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 A 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 A 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 A 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 A 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 A 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 A 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 A 350 HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS ALA SEQRES 12 A 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 A 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 A 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 A 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 A 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 A 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 A 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 A 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 A 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 A 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 A 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 A 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 A 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 A 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 A 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 A 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE MODRES 1BKX TPO A 197 THR PHOSPHOTHREONINE MODRES 1BKX SEP A 338 SER PHOSPHOSERINE HET TPO A 197 11 HET SEP A 338 10 HET AMP A 351 19 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 HOH *12(H2 O) HELIX 1 A GLU A 13 GLU A 31 1 19 HELIX 2 AB LEU A 40 GLN A 42 5 3 HELIX 3 B LYS A 76 LEU A 82 1 7 HELIX 4 C GLN A 84 ALA A 97 1 14 HELIX 5 D MET A 128 ILE A 135 1 8 HELIX 6 E GLU A 140 LEU A 160 1 21 HELIX 7 EF0 PRO A 169 ASN A 171 5 3 HELIX 8 EF1 PHE A 185 PHE A 187 5 3 HELIX 9 EF2 PRO A 202 TYR A 204 5 3 HELIX 10 EF PRO A 207 LEU A 211 1 5 HELIX 11 F LYS A 217 ALA A 233 1 17 HELIX 12 G PRO A 243 SER A 252 1 10 HELIX 13 H SER A 263 LEU A 273 1 11 HELIX 14 HI LEU A 277 LYS A 279 5 3 HELIX 15 I VAL A 288 ASN A 293 5 6 HELIX 16 IJ LYS A 295 PHE A 297 5 3 HELIX 17 J TRP A 302 GLN A 307 1 6 SHEET 1 A 5 PHE A 43 GLY A 52 0 SHEET 2 A 5 GLY A 55 HIS A 62 -1 N VAL A 57 O GLY A 50 SHEET 3 A 5 ASN A 67 ASP A 75 -1 N MET A 71 O MET A 58 SHEET 4 A 5 ASN A 115 MET A 120 -1 N MET A 120 O ALA A 70 SHEET 5 A 5 LEU A 106 ASP A 112 -1 N ASP A 112 O ASN A 115 SHEET 1 B 2 ASP A 161 ILE A 163 0 SHEET 2 B 2 LEU A 172 ASP A 175 -1 SHEET 1 C 2 TYR A 179 THR A 183 0 SHEET 2 C 2 ALA A 188 LYS A 192 -1 LINK C TRP A 196 N TPO A 197 1555 1555 1.31 LINK C TPO A 197 N LEU A 198 1555 1555 1.31 LINK C VAL A 337 N SEP A 338 1555 1555 1.32 LINK C SEP A 338 N ILE A 339 1555 1555 1.31 SITE 1 AC1 11 LEU A 49 GLY A 50 VAL A 57 VAL A 104 SITE 2 AC1 11 GLU A 121 TYR A 122 VAL A 123 GLU A 170 SITE 3 AC1 11 LEU A 173 THR A 183 PHE A 327 CRYST1 55.850 73.230 98.720 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010130 0.00000