HEADER COMPLEX (INHIBITOR PROTEIN/KINASE) 21-JUL-98 1BLX TITLE P19INK4D/CDK6 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 6; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: P19INK4D; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: SF9; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: GST FUSION; SOURCE 12 EXPRESSION_SYSTEM_VECTOR: GST-CDK6 BACULOVIRUS; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: GST FUSION PLASMID; SOURCE 14 MOL_ID: 2; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 CELL_LINE: SF9; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: GST FUSION; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: GST FUSION PLASMID KEYWDS INHIBITOR PROTEIN, CYCLIN-DEPENDENT KINASE, CELL CYCLE CONTROL, KEYWDS 2 ALPHA/BETA, COMPLEX (INHIBITOR PROTEIN-KINASE), COMPLEX (INHIBITOR KEYWDS 3 PROTEIN-KINASE) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.H.BROTHERTON,V.DHANARAJ,S.WICK,L.BRIZUELA,P.J.DOMAILLE,E.VOLYANIK, AUTHOR 2 X.XU,E.PARISINI,B.O.SMITH,S.J.ARCHER,M.SERRANO,S.L.BRENNER, AUTHOR 3 T.L.BLUNDELL,E.D.LAUE REVDAT 5 02-AUG-23 1BLX 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 1BLX 1 VERSN REVDAT 3 04-AUG-99 1BLX 1 COMPND REVDAT 2 08-JUN-99 1BLX 1 COMPND REVDAT 1 01-JUN-99 1BLX 0 JRNL AUTH D.H.BROTHERTON,V.DHANARAJ,S.WICK,L.BRIZUELA,P.J.DOMAILLE, JRNL AUTH 2 E.VOLYANIK,X.XU,E.PARISINI,B.O.SMITH,S.J.ARCHER,M.SERRANO, JRNL AUTH 3 S.L.BRENNER,T.L.BLUNDELL,E.D.LAUE JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF THE CYCLIN D-DEPENDENT JRNL TITL 2 KINASE CDK6 BOUND TO THE CELL-CYCLE INHIBITOR P19INK4D. JRNL REF NATURE V. 395 244 1998 JRNL REFN ISSN 0028-0836 JRNL PMID 9751051 JRNL DOI 10.1038/26164 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.H.BROTHERTON,V.DHANARAJ,S.WICK,L.BRIZUELA,P.J.DOMAILLE, REMARK 1 AUTH 2 E.VOLYANIK,X.XU,E.PARISINI,B.O.SMITH,S.J.ARCHER,M.SERRANO, REMARK 1 AUTH 3 S.L.BRENNER,T.L.BLUNDELL,E.D.LAUE REMARK 1 TITL ERRATUM. CRYSTAL STRUCTURE OF THE COMPLEX OF THE CYCLIN REMARK 1 TITL 2 D-DEPENDENT KINASE CDK6 BOUND TO THE CELL-CYCLE INHIBITOR REMARK 1 TITL 3 P19INK4D REMARK 1 REF NATURE V. 396 390 1998 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 41965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 279 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9475 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 18.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1HCK AND 1AP7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.10500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.10500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 310 REMARK 465 ASP A 311 REMARK 465 SER A 312 REMARK 465 HIS A 313 REMARK 465 LEU A 314 REMARK 465 PRO A 315 REMARK 465 PRO A 316 REMARK 465 SER A 317 REMARK 465 GLN A 318 REMARK 465 ASN A 319 REMARK 465 THR A 320 REMARK 465 SER A 321 REMARK 465 GLU A 322 REMARK 465 LEU A 323 REMARK 465 ASN A 324 REMARK 465 THR A 325 REMARK 465 ALA A 326 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 LEU B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 465 MET B 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 6 CG CD1 CD2 REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 48 CG CD OE1 NE2 REMARK 470 THR A 49 OG1 CG2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 172 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 173 CG CD OE1 NE2 REMARK 470 MET A 174 CG SD CE REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 VAL B 6 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 510 O HOH B 188 3556 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 165 CD PRO B 165 N 0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 60 NH1 - CZ - NH2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLU A 69 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 VAL A 77 N - CA - CB ANGL. DEV. = -15.5 DEGREES REMARK 500 VAL A 77 CG1 - CB - CG2 ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 81 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 102 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 110 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 131 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 131 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 THR A 154 N - CA - CB ANGL. DEV. = -15.1 DEGREES REMARK 500 THR A 154 OG1 - CB - CG2 ANGL. DEV. = 20.8 DEGREES REMARK 500 VAL A 200 CA - CB - CG1 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 246 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 246 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 275 CB - CG - OD2 ANGL. DEV. = 9.0 DEGREES REMARK 500 ILE A 289 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 ILE A 289 CA - CB - CG2 ANGL. DEV. = 12.8 DEGREES REMARK 500 TYR A 299 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR A 299 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B 20 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 GLU B 23 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 25 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 26 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 40 CD - NE - CZ ANGL. DEV. = 42.0 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU B 60 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG B 83 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG B 83 NH1 - CZ - NH2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG B 83 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 THR B 84 N - CA - CB ANGL. DEV. = -18.7 DEGREES REMARK 500 THR B 84 OG1 - CB - CG2 ANGL. DEV. = 18.0 DEGREES REMARK 500 ASP B 88 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 HIS B 133 CA - CB - CG ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 PRO B 165 CA - N - CD ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -20.25 -169.83 REMARK 500 ASN A 35 50.17 -118.87 REMARK 500 ASP A 102 42.33 -85.66 REMARK 500 ARG A 144 -18.06 83.55 REMARK 500 ASP A 145 47.47 -140.27 REMARK 500 PHE A 172 97.26 -45.56 REMARK 500 GLN A 173 69.65 0.12 REMARK 500 ALA A 175 8.79 85.04 REMARK 500 LEU A 176 -2.81 88.37 REMARK 500 SER A 178 99.15 63.54 REMARK 500 ALA A 197 -149.35 -143.45 REMARK 500 ARG A 220 77.96 -108.47 REMARK 500 ASP A 268 -10.29 88.20 REMARK 500 LEU A 281 49.04 -88.02 REMARK 500 ASP A 302 40.77 -93.10 REMARK 500 CYS A 306 92.40 66.73 REMARK 500 LYS A 307 -141.09 -88.22 REMARK 500 MET B 50 104.20 -59.44 REMARK 500 ALA B 72 -73.91 -44.06 REMARK 500 MET B 163 61.55 -113.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE B 164 -10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 0 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 69 OE2 REMARK 620 2 GLU A 72 OE2 98.6 REMARK 620 3 HOH A 327 O 101.3 82.1 REMARK 620 4 HOH A 349 O 78.3 167.8 86.9 REMARK 620 5 HOH A 392 O 166.0 93.9 86.4 90.7 REMARK 620 6 HOH A 477 O 86.9 92.0 170.5 99.6 86.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CALCIUM BINDING SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 0 DBREF 1BLX A 1 326 UNP Q00534 CDK6_HUMAN 1 326 DBREF 1BLX B 1 166 UNP Q60773 CDN2D_MOUSE 1 166 SEQADV 1BLX ALA B 16 UNP Q60773 ARG 16 VARIANT SEQRES 1 A 326 MET GLU LYS ASP GLY LEU CYS ARG ALA ASP GLN GLN TYR SEQRES 2 A 326 GLU CYS VAL ALA GLU ILE GLY GLU GLY ALA TYR GLY LYS SEQRES 3 A 326 VAL PHE LYS ALA ARG ASP LEU LYS ASN GLY GLY ARG PHE SEQRES 4 A 326 VAL ALA LEU LYS ARG VAL ARG VAL GLN THR GLY GLU GLU SEQRES 5 A 326 GLY MET PRO LEU SER THR ILE ARG GLU VAL ALA VAL LEU SEQRES 6 A 326 ARG HIS LEU GLU THR PHE GLU HIS PRO ASN VAL VAL ARG SEQRES 7 A 326 LEU PHE ASP VAL CYS THR VAL SER ARG THR ASP ARG GLU SEQRES 8 A 326 THR LYS LEU THR LEU VAL PHE GLU HIS VAL ASP GLN ASP SEQRES 9 A 326 LEU THR THR TYR LEU ASP LYS VAL PRO GLU PRO GLY VAL SEQRES 10 A 326 PRO THR GLU THR ILE LYS ASP MET MET PHE GLN LEU LEU SEQRES 11 A 326 ARG GLY LEU ASP PHE LEU HIS SER HIS ARG VAL VAL HIS SEQRES 12 A 326 ARG ASP LEU LYS PRO GLN ASN ILE LEU VAL THR SER SER SEQRES 13 A 326 GLY GLN ILE LYS LEU ALA ASP PHE GLY LEU ALA ARG ILE SEQRES 14 A 326 TYR SER PHE GLN MET ALA LEU THR SER VAL VAL VAL THR SEQRES 15 A 326 LEU TRP TYR ARG ALA PRO GLU VAL LEU LEU GLN SER SER SEQRES 16 A 326 TYR ALA THR PRO VAL ASP LEU TRP SER VAL GLY CYS ILE SEQRES 17 A 326 PHE ALA GLU MET PHE ARG ARG LYS PRO LEU PHE ARG GLY SEQRES 18 A 326 SER SER ASP VAL ASP GLN LEU GLY LYS ILE LEU ASP VAL SEQRES 19 A 326 ILE GLY LEU PRO GLY GLU GLU ASP TRP PRO ARG ASP VAL SEQRES 20 A 326 ALA LEU PRO ARG GLN ALA PHE HIS SER LYS SER ALA GLN SEQRES 21 A 326 PRO ILE GLU LYS PHE VAL THR ASP ILE ASP GLU LEU GLY SEQRES 22 A 326 LYS ASP LEU LEU LEU LYS CYS LEU THR PHE ASN PRO ALA SEQRES 23 A 326 LYS ARG ILE SER ALA TYR SER ALA LEU SER HIS PRO TYR SEQRES 24 A 326 PHE GLN ASP LEU GLU ARG CYS LYS GLU ASN LEU ASP SER SEQRES 25 A 326 HIS LEU PRO PRO SER GLN ASN THR SER GLU LEU ASN THR SEQRES 26 A 326 ALA SEQRES 1 B 166 MET LEU LEU GLU GLU VAL CYS VAL GLY ASP ARG LEU SER SEQRES 2 B 166 GLY ALA ALA ALA ARG GLY ASP VAL GLN GLU VAL ARG ARG SEQRES 3 B 166 LEU LEU HIS ARG GLU LEU VAL HIS PRO ASP ALA LEU ASN SEQRES 4 B 166 ARG PHE GLY LYS THR ALA LEU GLN VAL MET MET PHE GLY SEQRES 5 B 166 SER PRO ALA VAL ALA LEU GLU LEU LEU LYS GLN GLY ALA SEQRES 6 B 166 SER PRO ASN VAL GLN ASP ALA SER GLY THR SER PRO VAL SEQRES 7 B 166 HIS ASP ALA ALA ARG THR GLY PHE LEU ASP THR LEU LYS SEQRES 8 B 166 VAL LEU VAL GLU HIS GLY ALA ASP VAL ASN ALA LEU ASP SEQRES 9 B 166 SER THR GLY SER LEU PRO ILE HIS LEU ALA ILE ARG GLU SEQRES 10 B 166 GLY HIS SER SER VAL VAL SER PHE LEU ALA PRO GLU SER SEQRES 11 B 166 ASP LEU HIS HIS ARG ASP ALA SER GLY LEU THR PRO LEU SEQRES 12 B 166 GLU LEU ALA ARG GLN ARG GLY ALA GLN ASN LEU MET ASP SEQRES 13 B 166 ILE LEU GLN GLY HIS MET MET ILE PRO MET HET CA A 0 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *294(H2 O) HELIX 1 1 ALA A 9 GLN A 11 5 3 HELIX 2 2 SER A 57 PHE A 71 5 15 HELIX 3 3 LEU A 105 LYS A 111 1 7 HELIX 4 4 THR A 119 HIS A 139 1 21 HELIX 5 5 PRO A 148 ASN A 150 5 3 HELIX 6 6 PHE A 172 LEU A 176 5 5 HELIX 7 7 PRO A 188 LEU A 191 1 4 HELIX 8 8 THR A 198 ARG A 214 5 17 HELIX 9 9 ASP A 224 ILE A 235 1 12 HELIX 10 10 GLU A 240 ASP A 242 5 3 HELIX 11 11 ARG A 251 ALA A 253 5 3 HELIX 12 12 ILE A 262 LYS A 264 5 3 HELIX 13 13 GLU A 271 CYS A 280 1 10 HELIX 14 14 ALA A 291 LEU A 295 1 5 HELIX 15 15 PRO A 298 PHE A 300 5 3 HELIX 16 16 CYS B 7 ALA B 17 1 11 HELIX 17 17 VAL B 21 HIS B 29 1 9 HELIX 18 18 ALA B 45 VAL B 48 1 4 HELIX 19 19 PRO B 54 LYS B 62 1 9 HELIX 20 20 PRO B 77 THR B 84 1 8 HELIX 21 21 LEU B 87 GLU B 95 1 9 HELIX 22 22 PRO B 110 GLU B 117 1 8 HELIX 23 23 SER B 120 GLU B 129 1 10 HELIX 24 24 PRO B 142 ARG B 149 1 8 HELIX 25 25 GLN B 152 HIS B 161 1 10 SHEET 1 A 5 GLY A 20 GLY A 22 0 SHEET 2 A 5 GLY A 25 ASP A 32 -1 N VAL A 27 O GLY A 20 SHEET 3 A 5 ARG A 38 GLN A 48 -1 N LEU A 42 O PHE A 28 SHEET 4 A 5 GLU A 91 GLU A 99 -1 N PHE A 98 O ALA A 41 SHEET 5 A 5 LEU A 79 THR A 84 -1 N CYS A 83 O THR A 95 SHEET 1 B 2 ILE A 151 VAL A 153 0 SHEET 2 B 2 ILE A 159 LEU A 161 -1 N LYS A 160 O LEU A 152 SHEET 1 C 2 TYR A 13 GLU A 18 0 SHEET 2 C 2 PHE A 28 ASP A 32 -1 N ARG A 31 O GLU A 14 LINK CA CA A 0 OE2 GLU A 69 1555 1555 2.39 LINK CA CA A 0 OE2 GLU A 72 1555 1555 2.30 LINK CA CA A 0 O HOH A 327 1555 1555 2.47 LINK CA CA A 0 O HOH A 349 1555 1555 2.67 LINK CA CA A 0 O HOH A 392 1555 1555 2.45 LINK CA CA A 0 O HOH A 477 1555 1555 2.35 CISPEP 1 GLU A 114 PRO A 115 0 1.95 SITE 1 CAB 2 GLU A 69 GLU A 72 SITE 1 AC1 6 GLU A 69 GLU A 72 HOH A 327 HOH A 349 SITE 2 AC1 6 HOH A 392 HOH A 477 CRYST1 74.210 76.410 93.800 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013475 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010661 0.00000