data_1BM2 # _entry.id 1BM2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BM2 pdb_00001bm2 10.2210/pdb1bm2/pdb RCSB RCSB008213 ? ? WWPDB D_1000008213 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BM2 _pdbx_database_status.recvd_initial_deposition_date 1998-07-27 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rondeau, J.M.' 1 'Zurini, M.' 2 # _citation.id primary _citation.title 'Structural and conformational requirements for high-affinity binding to the SH2 domain of Grb2(1).' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 42 _citation.page_first 971 _citation.page_last 980 _citation.year 1999 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10090780 _citation.pdbx_database_id_DOI 10.1021/jm9811007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ettmayer, P.' 1 ? primary 'France, D.' 2 ? primary 'Gounarides, J.' 3 ? primary 'Jarosinski, M.' 4 ? primary 'Martin, M.S.' 5 ? primary 'Rondeau, J.M.' 6 ? primary 'Sabio, M.' 7 ? primary 'Topiol, S.' 8 ? primary 'Weidmann, B.' 9 ? primary 'Zurini, M.' 10 ? primary 'Bair, K.W.' 11 ? # _cell.entry_id 1BM2 _cell.length_a 83.780 _cell.length_b 83.780 _cell.length_c 31.990 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BM2 _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN (GROWTH FACTOR RECEPTOR BOUND PROTEIN 2)' 13577.362 1 ? ? 'SH2 DOMAIN' ? 2 polymer syn 'PROTEIN (PKF273-791)' 842.896 1 ? ? ? 'ACE: N-TERMINAL ACETYL GROUP PTR: L-PHOSPHOTYROSINE' 3 water nat water 18.015 70 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 GRB2 2 'CYCLO-[N-ALPHA-ACETYL-L-THIALYSYL-O-PHOSPHOTYROSYL -VALYL-ASPARAGYL-VALYL- PROLYL]' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFN SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA ; ;GSPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFN SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA ; A ? 2 'polypeptide(L)' no yes '(ACE)(SLZ)(PTR)VNVP' XKYVNVP L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 LYS n 1 5 ASN n 1 6 TYR n 1 7 ILE n 1 8 GLU n 1 9 MET n 1 10 LYS n 1 11 PRO n 1 12 HIS n 1 13 PRO n 1 14 TRP n 1 15 PHE n 1 16 PHE n 1 17 GLY n 1 18 LYS n 1 19 ILE n 1 20 PRO n 1 21 ARG n 1 22 ALA n 1 23 LYS n 1 24 ALA n 1 25 GLU n 1 26 GLU n 1 27 MET n 1 28 LEU n 1 29 SER n 1 30 LYS n 1 31 GLN n 1 32 ARG n 1 33 HIS n 1 34 ASP n 1 35 GLY n 1 36 ALA n 1 37 PHE n 1 38 LEU n 1 39 ILE n 1 40 ARG n 1 41 GLU n 1 42 SER n 1 43 GLU n 1 44 SER n 1 45 ALA n 1 46 PRO n 1 47 GLY n 1 48 ASP n 1 49 PHE n 1 50 SER n 1 51 LEU n 1 52 SER n 1 53 VAL n 1 54 LYS n 1 55 PHE n 1 56 GLY n 1 57 ASN n 1 58 ASP n 1 59 VAL n 1 60 GLN n 1 61 HIS n 1 62 PHE n 1 63 LYS n 1 64 VAL n 1 65 LEU n 1 66 ARG n 1 67 ASP n 1 68 GLY n 1 69 ALA n 1 70 GLY n 1 71 LYS n 1 72 TYR n 1 73 PHE n 1 74 LEU n 1 75 TRP n 1 76 VAL n 1 77 VAL n 1 78 LYS n 1 79 PHE n 1 80 ASN n 1 81 SER n 1 82 LEU n 1 83 ASN n 1 84 GLU n 1 85 LEU n 1 86 VAL n 1 87 ASP n 1 88 TYR n 1 89 HIS n 1 90 ARG n 1 91 SER n 1 92 THR n 1 93 SER n 1 94 VAL n 1 95 SER n 1 96 ARG n 1 97 ASN n 1 98 GLN n 1 99 GLN n 1 100 ILE n 1 101 PHE n 1 102 LEU n 1 103 ARG n 1 104 ASP n 1 105 ILE n 1 106 GLU n 1 107 GLN n 1 108 VAL n 1 109 PRO n 1 110 GLN n 1 111 GLN n 1 112 PRO n 1 113 THR n 1 114 TYR n 1 115 VAL n 1 116 GLN n 1 117 ALA n 2 1 ACE n 2 2 SLZ n 2 3 PTR n 2 4 VAL n 2 5 ASN n 2 6 VAL n 2 7 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene GRB2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location CYTOPLASM _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant PLYSS _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP GRB2_HUMAN 1 ? ? ? ? 2 PDB 1BM2 2 ? ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BM2 A 1 ? 117 ? P29354 47 ? 163 ? 47 163 2 2 1BM2 L 1 ? 7 ? 1BM2 1 ? 7 ? 1 7 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1BM2 GLY A 1 ? UNP P29354 PHE 47 'cloning artifact' 47 1 1 1BM2 SER A 2 ? UNP P29354 ILE 48 'cloning artifact' 48 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SLZ 'L-peptide linking' n L-THIALYSINE ? 'C5 H12 N2 O2 S' 164.226 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1BM2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 49 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;PROTEIN (15MG/ML IN 100MM SODIUM CHLORIDE, 0.02% SODIUM AZIDE) WAS CRYSTALLIZED FROM 30% SATURATED AMMONIUM SULFATE, 100MM SODIUM HEPES PH 7.0, IN PRESENCE OF A 2-FOLD EXCESS OF LIGAND ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-01-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.873 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM1A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM1A _diffrn_source.pdbx_wavelength 0.873 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BM2 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 8.0 _reflns.d_resolution_high 2.10 _reflns.number_obs 7262 _reflns.number_all ? _reflns.percent_possible_obs 95.6 _reflns.pdbx_Rmerge_I_obs 0.0440000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.3 _reflns.B_iso_Wilson_estimate 15.2 _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.17 _reflns_shell.percent_possible_all 96.1 _reflns_shell.Rmerge_I_obs 0.1990000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BM2 _refine.ls_number_reflns_obs 7184 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1000000.00 _refine.pdbx_data_cutoff_low_absF 0.10000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 94.5 _refine.ls_R_factor_obs 0.1970000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1970000 _refine.ls_R_factor_R_free 0.2320000 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 738 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 27.3 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1BMB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1BM2 _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.27 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.34 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 875 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 945 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.9 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.21 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 2.71 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 4.24 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 4.72 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 7.36 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1078 _refine_ls_shell.R_factor_R_work 0.2810000 _refine_ls_shell.percent_reflns_obs 96.2 _refine_ls_shell.R_factor_R_free 0.3580000 _refine_ls_shell.R_factor_R_free_error 0.034 _refine_ls_shell.percent_reflns_R_free 9.4 _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 WATER.PAR WATER.TOP 'X-RAY DIFFRACTION' 3 PO4.PAR ? 'X-RAY DIFFRACTION' # _struct.entry_id 1BM2 _struct.title 'GRB2-SH2 DOMAIN IN COMPLEX WITH CYCLO-[N-ALPHA-ACETYL-L-THI ALYSYL-O-PHOSPHOTYROSYL-VALYL-ASPARAGYL-VALYL-PROLYL] (PKF273-791)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BM2 _struct_keywords.pdbx_keywords 'HORMONE/GROWTH FACTOR' _struct_keywords.text 'SH2 DOMAIN, SIGNAL TRANSDUCTION, ADAPTOR PROTEIN, RAS PATHWAY, CYCLIC PEPTIDE, HORMONE-GROWTH FACTOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 21 ? LYS A 30 ? ARG A 67 LYS A 76 1 ? 10 HELX_P HELX_P2 2 LEU A 82 ? SER A 91 ? LEU A 128 SER A 137 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ACE 1 C ? ? ? 1_555 B SLZ 2 N ? ? L ACE 1 L SLZ 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? B SLZ 2 C ? ? ? 1_555 B PTR 3 N ? ? L SLZ 2 L PTR 3 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale one ? B SLZ 2 NZ ? ? ? 1_555 B PRO 7 C ? ? L SLZ 2 L PRO 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? B PTR 3 C ? ? ? 1_555 B VAL 4 N ? ? L PTR 3 L VAL 4 1_555 ? ? ? ? ? ? ? 1.326 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 37 ? GLU A 41 ? PHE A 83 GLU A 87 A 2 PHE A 49 ? PHE A 55 ? PHE A 95 PHE A 101 A 3 ASP A 58 ? VAL A 64 ? ASP A 104 VAL A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 38 ? O LEU A 84 N SER A 52 ? N SER A 98 A 2 3 O PHE A 49 ? O PHE A 95 N VAL A 64 ? N VAL A 110 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id L _struct_site.pdbx_auth_comp_id ACE _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE ACE L 1' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id HOH _struct_site_gen.label_asym_id D _struct_site_gen.label_seq_id . _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id HOH _struct_site_gen.auth_asym_id L _struct_site_gen.auth_seq_id 10 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 4_556 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 1BM2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BM2 _atom_sites.fract_transf_matrix[1][1] 0.011936 _atom_sites.fract_transf_matrix[1][2] 0.006891 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013782 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031260 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 47 ? ? ? A . n A 1 2 SER 2 48 ? ? ? A . n A 1 3 PRO 3 49 ? ? ? A . n A 1 4 LYS 4 50 ? ? ? A . n A 1 5 ASN 5 51 ? ? ? A . n A 1 6 TYR 6 52 ? ? ? A . n A 1 7 ILE 7 53 ? ? ? A . n A 1 8 GLU 8 54 ? ? ? A . n A 1 9 MET 9 55 55 MET MET A . n A 1 10 LYS 10 56 56 LYS LYS A . n A 1 11 PRO 11 57 57 PRO PRO A . n A 1 12 HIS 12 58 58 HIS HIS A . n A 1 13 PRO 13 59 59 PRO PRO A . n A 1 14 TRP 14 60 60 TRP TRP A . n A 1 15 PHE 15 61 61 PHE PHE A . n A 1 16 PHE 16 62 62 PHE PHE A . n A 1 17 GLY 17 63 63 GLY GLY A . n A 1 18 LYS 18 64 64 LYS LYS A . n A 1 19 ILE 19 65 65 ILE ILE A . n A 1 20 PRO 20 66 66 PRO PRO A . n A 1 21 ARG 21 67 67 ARG ARG A . n A 1 22 ALA 22 68 68 ALA ALA A . n A 1 23 LYS 23 69 69 LYS LYS A . n A 1 24 ALA 24 70 70 ALA ALA A . n A 1 25 GLU 25 71 71 GLU GLU A . n A 1 26 GLU 26 72 72 GLU GLU A . n A 1 27 MET 27 73 73 MET MET A . n A 1 28 LEU 28 74 74 LEU LEU A . n A 1 29 SER 29 75 75 SER SER A . n A 1 30 LYS 30 76 76 LYS LYS A . n A 1 31 GLN 31 77 77 GLN GLN A . n A 1 32 ARG 32 78 78 ARG ARG A . n A 1 33 HIS 33 79 79 HIS HIS A . n A 1 34 ASP 34 80 80 ASP ASP A . n A 1 35 GLY 35 81 81 GLY GLY A . n A 1 36 ALA 36 82 82 ALA ALA A . n A 1 37 PHE 37 83 83 PHE PHE A . n A 1 38 LEU 38 84 84 LEU LEU A . n A 1 39 ILE 39 85 85 ILE ILE A . n A 1 40 ARG 40 86 86 ARG ARG A . n A 1 41 GLU 41 87 87 GLU GLU A . n A 1 42 SER 42 88 88 SER SER A . n A 1 43 GLU 43 89 89 GLU GLU A . n A 1 44 SER 44 90 90 SER SER A . n A 1 45 ALA 45 91 91 ALA ALA A . n A 1 46 PRO 46 92 92 PRO PRO A . n A 1 47 GLY 47 93 93 GLY GLY A . n A 1 48 ASP 48 94 94 ASP ASP A . n A 1 49 PHE 49 95 95 PHE PHE A . n A 1 50 SER 50 96 96 SER SER A . n A 1 51 LEU 51 97 97 LEU LEU A . n A 1 52 SER 52 98 98 SER SER A . n A 1 53 VAL 53 99 99 VAL VAL A . n A 1 54 LYS 54 100 100 LYS LYS A . n A 1 55 PHE 55 101 101 PHE PHE A . n A 1 56 GLY 56 102 102 GLY GLY A . n A 1 57 ASN 57 103 103 ASN ASN A . n A 1 58 ASP 58 104 104 ASP ASP A . n A 1 59 VAL 59 105 105 VAL VAL A . n A 1 60 GLN 60 106 106 GLN GLN A . n A 1 61 HIS 61 107 107 HIS HIS A . n A 1 62 PHE 62 108 108 PHE PHE A . n A 1 63 LYS 63 109 109 LYS LYS A . n A 1 64 VAL 64 110 110 VAL VAL A . n A 1 65 LEU 65 111 111 LEU LEU A . n A 1 66 ARG 66 112 112 ARG ARG A . n A 1 67 ASP 67 113 113 ASP ASP A . n A 1 68 GLY 68 114 114 GLY GLY A . n A 1 69 ALA 69 115 115 ALA ALA A . n A 1 70 GLY 70 116 116 GLY GLY A . n A 1 71 LYS 71 117 117 LYS LYS A . n A 1 72 TYR 72 118 118 TYR TYR A . n A 1 73 PHE 73 119 119 PHE PHE A . n A 1 74 LEU 74 120 120 LEU LEU A . n A 1 75 TRP 75 121 121 TRP TRP A . n A 1 76 VAL 76 122 122 VAL VAL A . n A 1 77 VAL 77 123 123 VAL VAL A . n A 1 78 LYS 78 124 124 LYS LYS A . n A 1 79 PHE 79 125 125 PHE PHE A . n A 1 80 ASN 80 126 126 ASN ASN A . n A 1 81 SER 81 127 127 SER SER A . n A 1 82 LEU 82 128 128 LEU LEU A . n A 1 83 ASN 83 129 129 ASN ASN A . n A 1 84 GLU 84 130 130 GLU GLU A . n A 1 85 LEU 85 131 131 LEU LEU A . n A 1 86 VAL 86 132 132 VAL VAL A . n A 1 87 ASP 87 133 133 ASP ASP A . n A 1 88 TYR 88 134 134 TYR TYR A . n A 1 89 HIS 89 135 135 HIS HIS A . n A 1 90 ARG 90 136 136 ARG ARG A . n A 1 91 SER 91 137 137 SER SER A . n A 1 92 THR 92 138 138 THR THR A . n A 1 93 SER 93 139 139 SER SER A . n A 1 94 VAL 94 140 140 VAL VAL A . n A 1 95 SER 95 141 141 SER SER A . n A 1 96 ARG 96 142 142 ARG ARG A . n A 1 97 ASN 97 143 143 ASN ASN A . n A 1 98 GLN 98 144 144 GLN GLN A . n A 1 99 GLN 99 145 145 GLN GLN A . n A 1 100 ILE 100 146 146 ILE ILE A . n A 1 101 PHE 101 147 147 PHE PHE A . n A 1 102 LEU 102 148 148 LEU LEU A . n A 1 103 ARG 103 149 149 ARG ARG A . n A 1 104 ASP 104 150 150 ASP ASP A . n A 1 105 ILE 105 151 151 ILE ILE A . n A 1 106 GLU 106 152 152 GLU GLU A . n A 1 107 GLN 107 153 ? ? ? A . n A 1 108 VAL 108 154 ? ? ? A . n A 1 109 PRO 109 155 ? ? ? A . n A 1 110 GLN 110 156 ? ? ? A . n A 1 111 GLN 111 157 ? ? ? A . n A 1 112 PRO 112 158 ? ? ? A . n A 1 113 THR 113 159 ? ? ? A . n A 1 114 TYR 114 160 ? ? ? A . n A 1 115 VAL 115 161 ? ? ? A . n A 1 116 GLN 116 162 ? ? ? A . n A 1 117 ALA 117 163 ? ? ? A . n B 2 1 ACE 1 1 1 ACE ACE L . n B 2 2 SLZ 2 2 2 SLZ SLZ L . n B 2 3 PTR 3 3 3 PTR PTR L . n B 2 4 VAL 4 4 4 VAL VAL L . n B 2 5 ASN 5 5 5 ASN ASN L . n B 2 6 VAL 6 6 6 VAL VAL L . n B 2 7 PRO 7 7 7 PRO PRO L . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 164 1 HOH HOH A . C 3 HOH 2 165 2 HOH HOH A . C 3 HOH 3 166 3 HOH HOH A . C 3 HOH 4 167 4 HOH HOH A . C 3 HOH 5 168 5 HOH HOH A . C 3 HOH 6 169 7 HOH HOH A . C 3 HOH 7 170 8 HOH HOH A . C 3 HOH 8 171 9 HOH HOH A . C 3 HOH 9 172 10 HOH HOH A . C 3 HOH 10 173 11 HOH HOH A . C 3 HOH 11 174 12 HOH HOH A . C 3 HOH 12 175 13 HOH HOH A . C 3 HOH 13 176 14 HOH HOH A . C 3 HOH 14 177 15 HOH HOH A . C 3 HOH 15 178 16 HOH HOH A . C 3 HOH 16 179 17 HOH HOH A . C 3 HOH 17 180 18 HOH HOH A . C 3 HOH 18 181 19 HOH HOH A . C 3 HOH 19 182 20 HOH HOH A . C 3 HOH 20 183 21 HOH HOH A . C 3 HOH 21 184 23 HOH HOH A . C 3 HOH 22 185 24 HOH HOH A . C 3 HOH 23 186 25 HOH HOH A . C 3 HOH 24 187 26 HOH HOH A . C 3 HOH 25 188 27 HOH HOH A . C 3 HOH 26 189 28 HOH HOH A . C 3 HOH 27 190 30 HOH HOH A . C 3 HOH 28 191 31 HOH HOH A . C 3 HOH 29 192 32 HOH HOH A . C 3 HOH 30 193 33 HOH HOH A . C 3 HOH 31 194 34 HOH HOH A . C 3 HOH 32 195 35 HOH HOH A . C 3 HOH 33 196 36 HOH HOH A . C 3 HOH 34 197 37 HOH HOH A . C 3 HOH 35 198 38 HOH HOH A . C 3 HOH 36 199 39 HOH HOH A . C 3 HOH 37 200 40 HOH HOH A . C 3 HOH 38 201 41 HOH HOH A . C 3 HOH 39 202 42 HOH HOH A . C 3 HOH 40 203 43 HOH HOH A . C 3 HOH 41 204 44 HOH HOH A . C 3 HOH 42 205 45 HOH HOH A . C 3 HOH 43 206 46 HOH HOH A . C 3 HOH 44 207 47 HOH HOH A . C 3 HOH 45 208 49 HOH HOH A . C 3 HOH 46 209 50 HOH HOH A . C 3 HOH 47 210 51 HOH HOH A . C 3 HOH 48 211 52 HOH HOH A . C 3 HOH 49 212 53 HOH HOH A . C 3 HOH 50 213 54 HOH HOH A . C 3 HOH 51 214 55 HOH HOH A . C 3 HOH 52 215 56 HOH HOH A . C 3 HOH 53 216 57 HOH HOH A . C 3 HOH 54 217 58 HOH HOH A . C 3 HOH 55 218 59 HOH HOH A . C 3 HOH 56 219 60 HOH HOH A . C 3 HOH 57 220 61 HOH HOH A . C 3 HOH 58 221 62 HOH HOH A . C 3 HOH 59 222 63 HOH HOH A . C 3 HOH 60 223 64 HOH HOH A . C 3 HOH 61 224 65 HOH HOH A . C 3 HOH 62 225 66 HOH HOH A . C 3 HOH 63 226 67 HOH HOH A . C 3 HOH 64 227 69 HOH HOH A . C 3 HOH 65 228 70 HOH HOH A . D 3 HOH 1 8 6 HOH HOH L . D 3 HOH 2 9 22 HOH HOH L . D 3 HOH 3 10 29 HOH HOH L . D 3 HOH 4 11 48 HOH HOH L . D 3 HOH 5 12 68 HOH HOH L . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B SLZ 2 L SLZ 2 ? LYS L-THIALYSINE 2 B PTR 3 L PTR 3 ? TYR O-PHOSPHOTYROSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1040 ? 1 MORE -11 ? 1 'SSA (A^2)' 6000 ? 2 'ABSA (A^2)' 3930 ? 2 MORE -32 ? 2 'SSA (A^2)' 10150 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.9900000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 179 ? C HOH . 2 1 A HOH 199 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-08-05 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-12-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_ref_seq_dif.details' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.1 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 121 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -124.89 _pdbx_validate_torsion.psi -100.21 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 55 ? CG ? A MET 9 CG 2 1 Y 1 A MET 55 ? SD ? A MET 9 SD 3 1 Y 1 A MET 55 ? CE ? A MET 9 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 47 ? A GLY 1 2 1 Y 1 A SER 48 ? A SER 2 3 1 Y 1 A PRO 49 ? A PRO 3 4 1 Y 1 A LYS 50 ? A LYS 4 5 1 Y 1 A ASN 51 ? A ASN 5 6 1 Y 1 A TYR 52 ? A TYR 6 7 1 Y 1 A ILE 53 ? A ILE 7 8 1 Y 1 A GLU 54 ? A GLU 8 9 1 Y 1 A GLN 153 ? A GLN 107 10 1 Y 1 A VAL 154 ? A VAL 108 11 1 Y 1 A PRO 155 ? A PRO 109 12 1 Y 1 A GLN 156 ? A GLN 110 13 1 Y 1 A GLN 157 ? A GLN 111 14 1 Y 1 A PRO 158 ? A PRO 112 15 1 Y 1 A THR 159 ? A THR 113 16 1 Y 1 A TYR 160 ? A TYR 114 17 1 Y 1 A VAL 161 ? A VAL 115 18 1 Y 1 A GLN 162 ? A GLN 116 19 1 Y 1 A ALA 163 ? A ALA 117 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #