HEADER TOXIN 08-OCT-91 1BOV OBSLTE 13-OCT-10 1BOV 2XSC TITLE CRYSTAL STRUCTURE OF THE CELL-BINDING B OLIGOMER OF VEROTOXIN-1 FROM TITLE 2 E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: VEROTOXIN-1; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR P.E.STEIN,R.J.READ REVDAT 3 13-OCT-10 1BOV 1 OBSLTE REVDAT 2 24-FEB-09 1BOV 1 VERSN REVDAT 1 31-OCT-93 1BOV 0 JRNL AUTH P.E.STEIN,A.BOODHOO,G.J.TYRRELL,J.L.BRUNTON,R.J.READ JRNL TITL CRYSTAL STRUCTURE OF THE CELL-BINDING B OLIGOMER OF JRNL TITL 2 VEROTOXIN-1 FROM E. COLI. JRNL REF NATURE V. 355 748 1992 JRNL REFN ISSN 0028-0836 JRNL PMID 1741063 JRNL DOI 10.1038/355748A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.BOODHOO,R.J.READ,J.BRUNTON REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF VEROTOXIN-1 B-SUBUNIT REMARK 1 REF J.MOL.BIOL. V. 221 729 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; NULL REMARK 3 ANGLE DISTANCE (A) : 2.900 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BOV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX 1* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN REMARK 300 APPLIED TO CHAIN *A*. REMARK 300 THE TRANSFORMATION PRESENTED ON *MTRIX 2* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *C* WHEN REMARK 300 APPLIED TO CHAIN *A*. REMARK 300 THE TRANSFORMATION PRESENTED ON *MTRIX 3* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *D* WHEN REMARK 300 APPLIED TO CHAIN *A*. REMARK 300 THE TRANSFORMATION PRESENTED ON *MTRIX 4* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *E* WHEN REMARK 300 APPLIED TO CHAIN *A*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR E 11 OE2 GLU E 28 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 14 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR A 14 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP A 26 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 LEU A 29 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASN A 35 N - CA - CB ANGL. DEV. = 14.6 DEGREES REMARK 500 SER A 42 N - CA - CB ANGL. DEV. = 13.4 DEGREES REMARK 500 VAL A 66 N - CA - CB ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TYR B 11 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR B 14 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU B 36 CB - CA - C ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 LYS C 13 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP C 18 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 THR C 21 CA - CB - CG2 ANGL. DEV. = 9.7 DEGREES REMARK 500 LYS C 27 CD - CE - NZ ANGL. DEV. = 14.7 DEGREES REMARK 500 LEU C 29 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG C 33 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG C 69 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP D 3 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 VAL D 9 CB - CA - C ANGL. DEV. = 11.6 DEGREES REMARK 500 GLU D 10 OE1 - CD - OE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 GLU D 10 CG - CD - OE1 ANGL. DEV. = -12.1 DEGREES REMARK 500 TYR D 11 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR D 14 CB - CG - CD2 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR D 14 CB - CG - CD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP D 16 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP D 17 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP D 18 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 LEU D 29 CA - CB - CG ANGL. DEV. = 20.4 DEGREES REMARK 500 ARG D 33 CD - NE - CZ ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG D 33 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 TYR E 14 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR E 14 CB - CG - CD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU E 29 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 ARG E 33 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 56 60.69 -112.50 REMARK 500 CYS B 4 -62.48 -102.41 REMARK 500 ALA B 56 52.65 -112.64 REMARK 500 ASP C 18 18.88 80.85 REMARK 500 SER C 64 9.48 -151.09 REMARK 500 CYS D 4 -51.68 -121.75 REMARK 500 ASP D 18 13.73 81.66 REMARK 500 SER D 64 11.62 -150.01 REMARK 500 CYS E 4 -58.29 -130.38 REMARK 500 THR E 54 149.68 -171.71 REMARK 500 ALA E 56 47.99 -67.20 REMARK 500 HIS E 58 162.66 172.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 35 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 77 DISTANCE = 8.13 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 70 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 1 OG1 REMARK 620 2 HOH B 81 O 92.6 REMARK 620 3 THR B 1 N 76.1 91.8 REMARK 620 4 THR D 1 N 88.9 88.8 165.0 REMARK 620 5 THR D 1 OG1 87.3 165.0 102.6 76.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 70 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 90 O REMARK 620 2 THR C 1 N 71.6 REMARK 620 3 THR C 1 OG1 101.2 61.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 70 DBREF 1BOV A 1 69 UNP P69178 SLTB_BPH30 21 89 DBREF 1BOV B 1 69 UNP P69178 SLTB_BPH30 21 89 DBREF 1BOV C 1 69 UNP P69178 SLTB_BPH30 21 89 DBREF 1BOV D 1 69 UNP P69178 SLTB_BPH30 21 89 DBREF 1BOV E 1 69 UNP P69178 SLTB_BPH30 21 89 SEQRES 1 A 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 A 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 A 69 LYS GLU LEU PHE THR ASN ARG TRP ASN LEU GLN SER LEU SEQRES 4 A 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 A 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 A 69 VAL ILE PHE ARG SEQRES 1 B 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 B 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 B 69 LYS GLU LEU PHE THR ASN ARG TRP ASN LEU GLN SER LEU SEQRES 4 B 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 B 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 B 69 VAL ILE PHE ARG SEQRES 1 C 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 C 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 C 69 LYS GLU LEU PHE THR ASN ARG TRP ASN LEU GLN SER LEU SEQRES 4 C 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 C 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 C 69 VAL ILE PHE ARG SEQRES 1 D 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 D 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 D 69 LYS GLU LEU PHE THR ASN ARG TRP ASN LEU GLN SER LEU SEQRES 4 D 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 D 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 D 69 VAL ILE PHE ARG SEQRES 1 E 69 THR PRO ASP CYS VAL THR GLY LYS VAL GLU TYR THR LYS SEQRES 2 E 69 TYR ASN ASP ASP ASP THR PHE THR VAL LYS VAL GLY ASP SEQRES 3 E 69 LYS GLU LEU PHE THR ASN ARG TRP ASN LEU GLN SER LEU SEQRES 4 E 69 LEU LEU SER ALA GLN ILE THR GLY MET THR VAL THR ILE SEQRES 5 E 69 LYS THR ASN ALA CYS HIS ASN GLY GLY GLY PHE SER GLU SEQRES 6 E 69 VAL ILE PHE ARG HET ZN B 70 1 HET ZN C 70 1 HET ZN E 70 1 HETNAM ZN ZINC ION FORMUL 6 ZN 3(ZN 2+) FORMUL 9 HOH *98(H2 O) HELIX 1 AA LEU A 36 THR A 46 1 11 HELIX 2 AB LEU B 36 THR B 46 1 11 HELIX 3 AC LEU C 36 THR C 46 1 11 HELIX 4 AD LEU D 36 THR D 46 1 11 HELIX 5 AE LEU E 36 THR E 46 1 11 SHEET 1 B1A 3 ASP A 3 LYS A 8 0 SHEET 2 B1A 3 THR A 49 LYS A 53 -1 N ILE A 52 O VAL A 5 SHEET 3 B1A 3 GLU A 65 PHE A 68 -1 N ILE A 67 O THR A 51 SHEET 1 B2A 3 VAL A 9 TYR A 14 0 SHEET 2 B2A 3 PHE A 20 VAL A 24 -1 N LYS A 23 O TYR A 11 SHEET 3 B2A 3 LYS A 27 THR A 31 -1 N LEU A 29 O VAL A 22 SHEET 1 B1B 3 ASP B 3 LYS B 8 0 SHEET 2 B1B 3 THR B 49 LYS B 53 -1 N ILE B 52 O VAL B 5 SHEET 3 B1B 3 GLU B 65 PHE B 68 -1 N ILE B 67 O THR B 51 SHEET 1 B2B 3 VAL B 9 TYR B 14 0 SHEET 2 B2B 3 PHE B 20 VAL B 24 -1 N LYS B 23 O TYR B 11 SHEET 3 B2B 3 LYS B 27 THR B 31 -1 N LEU B 29 O VAL B 22 SHEET 1 B1C 3 ASP C 3 LYS C 8 0 SHEET 2 B1C 3 THR C 49 LYS C 53 -1 N ILE C 52 O VAL C 5 SHEET 3 B1C 3 GLU C 65 PHE C 68 -1 N ILE C 67 O THR C 51 SHEET 1 B2C 3 VAL C 9 TYR C 14 0 SHEET 2 B2C 3 PHE C 20 VAL C 24 -1 N LYS C 23 O TYR C 11 SHEET 3 B2C 3 LYS C 27 THR C 31 -1 N LEU C 29 O VAL C 22 SHEET 1 B1D 3 ASP D 3 LYS D 8 0 SHEET 2 B1D 3 THR D 49 LYS D 53 -1 N ILE D 52 O VAL D 5 SHEET 3 B1D 3 GLU D 65 PHE D 68 -1 N ILE D 67 O THR D 51 SHEET 1 B2D 3 VAL D 9 TYR D 14 0 SHEET 2 B2D 3 PHE D 20 VAL D 24 -1 N LYS D 23 O TYR D 11 SHEET 3 B2D 3 LYS D 27 THR D 31 -1 N LEU D 29 O VAL D 22 SHEET 1 B1E 3 ASP E 3 LYS E 8 0 SHEET 2 B1E 3 THR E 49 LYS E 53 -1 N ILE E 52 O VAL E 5 SHEET 3 B1E 3 GLU E 65 PHE E 68 -1 N ILE E 67 O THR E 51 SHEET 1 B2E 3 VAL E 9 TYR E 14 0 SHEET 2 B2E 3 PHE E 20 VAL E 24 -1 N LYS E 23 O TYR E 11 SHEET 3 B2E 3 LYS E 27 THR E 31 -1 N LEU E 29 O VAL E 22 SSBOND 1 CYS A 4 CYS A 57 1555 1555 2.06 SSBOND 2 CYS B 4 CYS B 57 1555 1555 2.11 SSBOND 3 CYS C 4 CYS C 57 1555 1555 1.98 SSBOND 4 CYS D 4 CYS D 57 1555 1555 2.11 SSBOND 5 CYS E 4 CYS E 57 1555 1555 2.10 LINK ZN ZN B 70 OG1 THR B 1 1555 1555 2.41 LINK ZN ZN B 70 O HOH B 81 1555 1555 2.43 LINK ZN ZN B 70 N THR B 1 1555 1555 2.15 LINK ZN ZN C 70 O HOH C 90 1555 1555 2.67 LINK ZN ZN C 70 N THR C 1 1555 1555 2.33 LINK ZN ZN C 70 OG1 THR C 1 1555 1555 2.71 LINK ZN ZN E 70 N THR E 1 1555 1555 2.27 LINK ZN ZN B 70 N THR D 1 1555 3654 2.10 LINK ZN ZN B 70 OG1 THR D 1 1555 3654 2.29 SITE 1 AC1 3 THR B 1 HOH B 81 THR D 1 SITE 1 AC2 2 THR C 1 HOH C 90 SITE 1 AC3 1 THR E 1 CRYST1 59.600 102.400 56.100 90.00 90.00 90.00 P 21 21 21 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017825 0.00000 MTRIX1 1 0.672600 0.737700 -0.058500 -7.55400 1 MTRIX2 1 -0.504700 0.399400 -0.765300 14.60700 1 MTRIX3 1 -0.541200 0.544300 0.640900 -11.34600 1 MTRIX1 2 0.100000 0.697900 -0.709200 -6.18800 1 MTRIX2 2 -0.152100 -0.693600 -0.704100 32.49700 1 MTRIX3 2 -0.983300 0.178300 0.036800 -2.16700 1 MTRIX1 3 0.083800 -0.073600 -0.993800 6.46100 1 MTRIX2 3 0.631500 -0.767500 0.110100 30.20300 1 MTRIX3 3 -0.770800 -0.636800 -0.017900 12.01500 1 MTRIX1 4 0.626100 -0.533500 -0.568500 11.52700 1 MTRIX2 4 0.770100 0.308900 0.558200 9.70200 1 MTRIX3 4 -0.122200 -0.787300 0.604300 13.46000 1