data_1BP8 # _entry.id 1BP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BP8 pdb_00001bp8 10.2210/pdb1bp8/pdb RCSB RCSB007303 ? ? WWPDB D_1000007303 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-08-16 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2019-10-02 5 'Structure model' 3 0 2020-07-29 6 'Structure model' 3 1 2023-12-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' ndb_struct_conf_na 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_assembly_prop 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 5 'Structure model' atom_site 8 5 'Structure model' chem_comp 9 5 'Structure model' entity 10 5 'Structure model' pdbx_branch_scheme 11 5 'Structure model' pdbx_chem_comp_identifier 12 5 'Structure model' pdbx_entity_branch 13 5 'Structure model' pdbx_entity_branch_descriptor 14 5 'Structure model' pdbx_entity_branch_link 15 5 'Structure model' pdbx_entity_branch_list 16 5 'Structure model' pdbx_entity_nonpoly 17 5 'Structure model' pdbx_nonpoly_scheme 18 5 'Structure model' pdbx_struct_assembly_gen 19 5 'Structure model' pdbx_struct_conn_angle 20 5 'Structure model' struct_asym 21 5 'Structure model' struct_conn 22 5 'Structure model' struct_site 23 5 'Structure model' struct_site_gen 24 6 'Structure model' chem_comp 25 6 'Structure model' chem_comp_atom 26 6 'Structure model' chem_comp_bond 27 6 'Structure model' database_2 28 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 5 'Structure model' '_atom_site.Cartn_x' 5 5 'Structure model' '_atom_site.Cartn_y' 6 5 'Structure model' '_atom_site.Cartn_z' 7 5 'Structure model' '_atom_site.auth_asym_id' 8 5 'Structure model' '_atom_site.auth_atom_id' 9 5 'Structure model' '_atom_site.auth_comp_id' 10 5 'Structure model' '_atom_site.auth_seq_id' 11 5 'Structure model' '_atom_site.label_asym_id' 12 5 'Structure model' '_atom_site.label_atom_id' 13 5 'Structure model' '_atom_site.label_comp_id' 14 5 'Structure model' '_atom_site.label_entity_id' 15 5 'Structure model' '_atom_site.type_symbol' 16 5 'Structure model' '_chem_comp.name' 17 5 'Structure model' '_chem_comp.type' 18 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.value' 28 5 'Structure model' '_struct_conn.pdbx_dist_value' 29 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 5 'Structure model' '_struct_conn.pdbx_value_order' 31 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 32 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 6 'Structure model' '_chem_comp.pdbx_synonyms' 44 6 'Structure model' '_database_2.pdbx_DOI' 45 6 'Structure model' '_database_2.pdbx_database_accession' 46 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BP8 _pdbx_database_status.recvd_initial_deposition_date 1998-08-13 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Keniry, M.A.' 1 'Owen, E.A.' 2 'Shafer, R.H.' 3 # _citation.id primary _citation.title 'The three-dimensional structure of the 4:1 mithramycin:d(ACCCGGGT)2 complex: evidence for an interaction between the E saccharides' _citation.journal_abbrev Biopolymers _citation.journal_volume 54 _citation.page_first 104 _citation.page_last 114 _citation.year 2000 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10861371 _citation.pdbx_database_id_DOI '10.1002/1097-0282(200008)54:2<104::AID-BIP3>3.0.CO;2-2' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Keniry, M.A.' 1 ? primary 'Owen, E.A.' 2 ? primary 'Shafer, R.H.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*CP*CP*CP*GP*GP*GP*T)-3'" 2427.605 2 ? ? ? ;FOUR MOLECULES OF MITHRAMYCIN (PLICAMYCIN) (RESIDUES DDA-DDA-DXB-DDA-DDL-DDB, CHAINS C, D, E, F) BOUND IN THE MINOR GROOVE. Oxygens of the MITHRAMYCIN chromophore (residue DXB) are complexed with Mg++ ; 2 branched man 'beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose' 278.299 4 ? ? ? ? 3 branched syn '2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose' 422.468 4 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE' 388.411 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DC)(DC)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ACCCGGGT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE' DXB # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DT n # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DOlib1-3DOlib1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[ad122m-1b_1-5]/1-1/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{}}' LINUCS PDB-CARE ? 4 3 'WURCS=2.0/3,3,2/[ad122m-1b_1-5][ad112m-1b_1-5][ad622m-1b_1-5_3*C]/1-2-3/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 5 3 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2-deoxy-Fucp]{[(3+1)][b-D-2,6-deoxy-Allp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 DDA C1 O1 1 DDA O3 HO3 sing ? 2 3 2 DDL C1 O1 1 DDA O3 HO3 sing ? 3 3 3 MDA C1 O1 2 DDL O3 HO3 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDA 'D-saccharide, beta linking' . beta-D-Olivopyranose ;beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE ; 'C6 H12 O4' 148.157 DDL 'D-saccharide, beta linking' . 2,6-dideoxy-beta-D-galactopyranose ;2,6-DIDEOXY-BETA-D-GALACTOSE; 2,6-DIDEOXY-BETA-D-TALOSE; 2,6-dideoxy-beta-D-lyxo-hexopyranose; 2-deoxy-beta-D-fucopyranose; 2,6-dideoxy-D-galactose; 2,6-dideoxy-galactose ; 'C6 H12 O4' 148.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DXB non-polymer . '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-METHYL-ANTHRACENE' ? 'C21 H24 O7' 388.411 MDA 'D-saccharide, beta linking' . 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose ;2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE; 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-ribo-hexose ; 'C7 H14 O4' 162.184 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DOlib DDA 'COMMON NAME' GMML 1.0 b-D-Olivopyranose DDA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp DDA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli DDL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2-deoxy-Fucp # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n B 1 1 DA 1 1 1 DA A B . n B 1 2 DC 2 2 2 DC C B . n B 1 3 DC 3 3 3 DC C B . n B 1 4 DC 4 4 4 DC C B . n B 1 5 DG 5 5 5 DG G B . n B 1 6 DG 6 6 6 DG G B . n B 1 7 DG 7 7 7 DG G B . n B 1 8 DT 8 8 8 DT T B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 DDA 1 C DDA 1 ? DDA 1 n C 2 DDA 2 C DDA 2 ? DDA 1 n D 3 DDA 1 D DDA 1 ? DDA 1 n D 3 DDL 2 D DDL 2 ? DDA 1 n D 3 MDA 3 D MDA 3 ? DDA 1 n E 2 DDA 1 E DDA 1 ? DDA 9 n E 2 DDA 2 E DDA 2 ? DDA 9 n F 3 DDA 1 F DDA 1 ? DDA 9 n F 3 DDL 2 F DDL 2 ? DDA 9 n F 3 MDA 3 F MDA 3 ? DDA 9 n G 3 DDA 1 G DDA 1 ? DDA 2 n G 3 DDL 2 G DDL 2 ? DDA 2 n G 3 MDA 3 G MDA 3 ? DDA 2 n H 2 DDA 1 H DDA 1 ? DDA 2 n H 2 DDA 2 H DDA 2 ? DDA 2 n I 2 DDA 1 I DDA 1 ? DDA 1 n I 2 DDA 2 I DDA 2 ? DDA 1 n J 3 DDA 1 J DDA 1 ? DDA 1 n J 3 DDL 2 J DDL 2 ? DDA 1 n J 3 MDA 3 J MDA 3 ? DDA 1 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code K 4 MG 1 17 1 MG MG A . L 4 MG 1 18 9 MG MG A . M 5 DXB 1 21 1 DXB DXB A . N 5 DXB 1 22 9 DXB DXB A . O 5 DXB 1 19 2 DXB DXB B . P 5 DXB 1 20 1 DXB DXB B . # _cell.entry_id 1BP8 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BP8 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1BP8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1BP8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1BP8 _struct.title '4:2:1 mithramycin:Mg++:d(ACCCGGGT)2 complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BP8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'MITHRAMYCIN, DNA, OLIGONUCLEOTIDE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 4 ? L N N 4 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1BP8 _struct_ref.pdbx_db_accession 1BP8 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BP8 A 1 ? 8 ? 1BP8 1 ? 8 ? 1 8 2 1 1BP8 B 1 ? 8 ? 1BP8 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9960 ? 1 MORE 125 ? 1 'SSA (A^2)' 1860 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? M DXB . C6 ? ? ? 1_555 C DDA . O1 ? ? A DXB 21 C DDA 1 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale one ? M DXB . C2 ? ? ? 1_555 D DDA . O1 ? ? A DXB 21 D DDA 1 1_555 ? ? ? ? ? ? ? 1.416 ? ? covale3 covale one ? N DXB . C6 ? ? ? 1_555 E DDA . O1 ? ? A DXB 22 E DDA 1 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale4 covale one ? N DXB . C2 ? ? ? 1_555 F DDA . O1 ? ? A DXB 22 F DDA 1 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale5 covale one ? O DXB . C2 ? ? ? 1_555 G DDA . O1 ? ? B DXB 19 G DDA 1 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale6 covale one ? O DXB . C6 ? ? ? 1_555 H DDA . O1 ? ? B DXB 19 H DDA 1 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale7 covale one ? P DXB . C6 ? ? ? 1_555 I DDA . O1 ? ? B DXB 20 I DDA 1 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale8 covale one ? P DXB . C2 ? ? ? 1_555 J DDA . O1 ? ? B DXB 20 J DDA 1 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale9 covale both ? C DDA . O3 ? ? ? 1_555 C DDA . C1 ? ? C DDA 1 C DDA 2 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale10 covale both ? D DDA . O3 ? ? ? 1_555 D DDL . C1 ? ? D DDA 1 D DDL 2 1_555 ? ? ? ? ? ? ? 1.400 sing ? covale11 covale both ? D DDL . O3 ? ? ? 1_555 D MDA . C1 ? ? D DDL 2 D MDA 3 1_555 ? ? ? ? ? ? ? 1.414 sing ? covale12 covale both ? E DDA . O3 ? ? ? 1_555 E DDA . C1 ? ? E DDA 1 E DDA 2 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale13 covale both ? F DDA . O3 ? ? ? 1_555 F DDL . C1 ? ? F DDA 1 F DDL 2 1_555 ? ? ? ? ? ? ? 1.410 sing ? covale14 covale both ? F DDL . O3 ? ? ? 1_555 F MDA . C1 ? ? F DDL 2 F MDA 3 1_555 ? ? ? ? ? ? ? 1.424 sing ? covale15 covale both ? G DDA . O3 ? ? ? 1_555 G DDL . C1 ? ? G DDA 1 G DDL 2 1_555 ? ? ? ? ? ? ? 1.410 sing ? covale16 covale both ? G DDL . O3 ? ? ? 1_555 G MDA . C1 ? ? G DDL 2 G MDA 3 1_555 ? ? ? ? ? ? ? 1.432 sing ? covale17 covale both ? H DDA . O3 ? ? ? 1_555 H DDA . C1 ? ? H DDA 1 H DDA 2 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale18 covale both ? I DDA . O3 ? ? ? 1_555 I DDA . C1 ? ? I DDA 1 I DDA 2 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale19 covale both ? J DDA . O3 ? ? ? 1_555 J DDL . C1 ? ? J DDA 1 J DDL 2 1_555 ? ? ? ? ? ? ? 1.398 sing ? covale20 covale both ? J DDL . O3 ? ? ? 1_555 J MDA . C1 ? ? J DDL 2 J MDA 3 1_555 ? ? ? ? ? ? ? 1.414 sing ? metalc1 metalc ? ? K MG . MG ? ? ? 1_555 M DXB . O9 ? ? A MG 17 A DXB 21 1_555 ? ? ? ? ? ? ? 1.652 ? ? metalc2 metalc ? ? K MG . MG ? ? ? 1_555 M DXB . O1 ? ? A MG 17 A DXB 21 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc3 metalc ? ? K MG . MG ? ? ? 1_555 O DXB . O9 ? ? A MG 17 B DXB 19 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc4 metalc ? ? K MG . MG ? ? ? 1_555 O DXB . O1 ? ? A MG 17 B DXB 19 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc5 metalc ? ? L MG . MG ? ? ? 1_555 N DXB . O9 ? ? A MG 18 A DXB 22 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc6 metalc ? ? L MG . MG ? ? ? 1_555 N DXB . O1 ? ? A MG 18 A DXB 22 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc7 metalc ? ? L MG . MG ? ? ? 1_555 P DXB . O1 ? ? A MG 18 B DXB 20 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc8 metalc ? ? L MG . MG ? ? ? 1_555 P DXB . O9 ? ? A MG 18 B DXB 20 1_555 ? ? ? ? ? ? ? 1.657 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 1 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 1 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 2 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 2 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 2 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 6 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 6 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 6 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 7 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 7 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 7 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 8 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 8 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O9 ? M DXB . ? A DXB 21 ? 1_555 MG ? K MG . ? A MG 17 ? 1_555 O1 ? M DXB . ? A DXB 21 ? 1_555 83.4 ? 2 O9 ? M DXB . ? A DXB 21 ? 1_555 MG ? K MG . ? A MG 17 ? 1_555 O9 ? O DXB . ? B DXB 19 ? 1_555 174.1 ? 3 O1 ? M DXB . ? A DXB 21 ? 1_555 MG ? K MG . ? A MG 17 ? 1_555 O9 ? O DXB . ? B DXB 19 ? 1_555 97.6 ? 4 O9 ? M DXB . ? A DXB 21 ? 1_555 MG ? K MG . ? A MG 17 ? 1_555 O1 ? O DXB . ? B DXB 19 ? 1_555 111.0 ? 5 O1 ? M DXB . ? A DXB 21 ? 1_555 MG ? K MG . ? A MG 17 ? 1_555 O1 ? O DXB . ? B DXB 19 ? 1_555 84.9 ? 6 O9 ? O DXB . ? B DXB 19 ? 1_555 MG ? K MG . ? A MG 17 ? 1_555 O1 ? O DXB . ? B DXB 19 ? 1_555 74.9 ? 7 O9 ? N DXB . ? A DXB 22 ? 1_555 MG ? L MG . ? A MG 18 ? 1_555 O1 ? N DXB . ? A DXB 22 ? 1_555 74.4 ? 8 O9 ? N DXB . ? A DXB 22 ? 1_555 MG ? L MG . ? A MG 18 ? 1_555 O1 ? P DXB . ? B DXB 20 ? 1_555 95.7 ? 9 O1 ? N DXB . ? A DXB 22 ? 1_555 MG ? L MG . ? A MG 18 ? 1_555 O1 ? P DXB . ? B DXB 20 ? 1_555 89.0 ? 10 O9 ? N DXB . ? A DXB 22 ? 1_555 MG ? L MG . ? A MG 18 ? 1_555 O9 ? P DXB . ? B DXB 20 ? 1_555 177.6 ? 11 O1 ? N DXB . ? A DXB 22 ? 1_555 MG ? L MG . ? A MG 18 ? 1_555 O9 ? P DXB . ? B DXB 20 ? 1_555 104.2 ? 12 O1 ? P DXB . ? B DXB 20 ? 1_555 MG ? L MG . ? A MG 18 ? 1_555 O9 ? P DXB . ? B DXB 20 ? 1_555 86.2 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" A DA 1 ? ? "C5'" A DA 1 ? ? 0.776 1.418 -0.642 0.025 N 2 1 C4 A DC 2 ? ? C5 A DC 2 ? ? 1.365 1.425 -0.060 0.008 N 3 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.557 1.512 0.045 0.007 N 4 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.283 1.367 -0.084 0.006 N 5 1 C4 A DC 3 ? ? C5 A DC 3 ? ? 1.372 1.425 -0.053 0.008 N 6 1 N1 A DC 4 ? ? C6 A DC 4 ? ? 1.309 1.367 -0.058 0.006 N 7 1 N1 A DG 5 ? ? C2 A DG 5 ? ? 1.303 1.373 -0.070 0.008 N 8 1 N7 A DG 5 ? ? C8 A DG 5 ? ? 1.350 1.305 0.045 0.006 N 9 1 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.306 1.374 -0.068 0.007 N 10 1 N1 A DG 6 ? ? C2 A DG 6 ? ? 1.296 1.373 -0.077 0.008 N 11 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.349 1.305 0.044 0.006 N 12 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.330 1.374 -0.044 0.007 N 13 1 N1 A DG 7 ? ? C2 A DG 7 ? ? 1.288 1.373 -0.085 0.008 N 14 1 N7 A DG 7 ? ? C8 A DG 7 ? ? 1.345 1.305 0.040 0.006 N 15 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.325 1.374 -0.049 0.007 N 16 1 "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 1.337 1.516 -0.179 0.008 N 17 1 "O3'" A DT 8 ? ? "C3'" A DT 8 ? ? 1.198 1.419 -0.221 0.006 N 18 1 C2 A DT 8 ? ? N3 A DT 8 ? ? 1.322 1.373 -0.051 0.008 N 19 1 N3 A DT 8 ? ? C4 A DT 8 ? ? 1.332 1.382 -0.050 0.008 N 20 1 C6 A DT 8 ? ? N1 A DT 8 ? ? 1.314 1.378 -0.064 0.007 N 21 1 C4 B DC 2 ? ? C5 B DC 2 ? ? 1.363 1.425 -0.062 0.008 N 22 1 "C2'" B DC 3 ? ? "C1'" B DC 3 ? ? 1.456 1.518 -0.062 0.010 N 23 1 N1 B DC 3 ? ? C6 B DC 3 ? ? 1.293 1.367 -0.074 0.006 N 24 1 C4 B DC 3 ? ? C5 B DC 3 ? ? 1.372 1.425 -0.053 0.008 N 25 1 N1 B DC 4 ? ? C6 B DC 4 ? ? 1.308 1.367 -0.059 0.006 N 26 1 N1 B DG 5 ? ? C2 B DG 5 ? ? 1.303 1.373 -0.070 0.008 N 27 1 N7 B DG 5 ? ? C8 B DG 5 ? ? 1.347 1.305 0.042 0.006 N 28 1 C8 B DG 5 ? ? N9 B DG 5 ? ? 1.310 1.374 -0.064 0.007 N 29 1 N1 B DG 6 ? ? C2 B DG 6 ? ? 1.296 1.373 -0.077 0.008 N 30 1 N7 B DG 6 ? ? C8 B DG 6 ? ? 1.348 1.305 0.043 0.006 N 31 1 C8 B DG 6 ? ? N9 B DG 6 ? ? 1.328 1.374 -0.046 0.007 N 32 1 N1 B DG 7 ? ? C2 B DG 7 ? ? 1.284 1.373 -0.089 0.008 N 33 1 N7 B DG 7 ? ? C8 B DG 7 ? ? 1.347 1.305 0.042 0.006 N 34 1 C2 B DT 8 ? ? N3 B DT 8 ? ? 1.315 1.373 -0.058 0.008 N 35 1 C6 B DT 8 ? ? N1 B DT 8 ? ? 1.311 1.378 -0.067 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DA 1 ? ? C2 A DA 1 ? ? N3 A DA 1 ? ? 125.63 129.30 -3.67 0.50 N 2 1 C2 A DA 1 ? ? N3 A DA 1 ? ? C4 A DA 1 ? ? 114.99 110.60 4.39 0.50 N 3 1 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 122.56 117.70 4.86 0.50 N 4 1 C6 A DA 1 ? ? C5 A DA 1 ? ? N7 A DA 1 ? ? 136.73 132.30 4.43 0.70 N 5 1 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? "O4'" A DC 2 ? ? 119.19 109.80 9.39 1.10 N 6 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.36 108.30 3.06 0.30 N 7 1 N1 A DC 2 ? ? C2 A DC 2 ? ? N3 A DC 2 ? ? 114.46 119.20 -4.74 0.70 N 8 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 127.41 118.90 8.51 0.60 N 9 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 101.72 104.50 -2.78 0.40 N 10 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? "O4'" A DC 3 ? ? 121.92 109.80 12.12 1.10 N 11 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.66 108.30 3.36 0.30 N 12 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.05 118.90 4.15 0.60 N 13 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.36 108.30 3.06 0.30 N 14 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 123.35 118.90 4.45 0.60 N 15 1 N3 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 124.78 128.60 -3.82 0.50 N 16 1 C4 A DG 5 ? ? C5 A DG 5 ? ? N7 A DG 5 ? ? 108.40 110.80 -2.40 0.40 N 17 1 C6 A DG 5 ? ? C5 A DG 5 ? ? N7 A DG 5 ? ? 134.28 130.40 3.88 0.60 N 18 1 N1 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 116.09 119.90 -3.81 0.60 N 19 1 N9 A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 126.99 114.30 12.69 1.40 N 20 1 N3 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 124.55 128.60 -4.05 0.50 N 21 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 108.12 110.80 -2.68 0.40 N 22 1 C6 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 134.44 130.40 4.04 0.60 N 23 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 115.90 119.90 -4.00 0.60 N 24 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.93 108.30 2.63 0.30 N 25 1 N3 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 124.85 128.60 -3.75 0.50 N 26 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 108.00 110.80 -2.80 0.40 N 27 1 C6 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 134.74 130.40 4.34 0.60 N 28 1 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 116.06 119.90 -3.84 0.60 N 29 1 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 111.37 103.10 8.27 0.90 N 30 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.21 108.30 3.91 0.30 N 31 1 N1 B DA 1 ? ? C2 B DA 1 ? ? N3 B DA 1 ? ? 125.78 129.30 -3.52 0.50 N 32 1 C2 B DA 1 ? ? N3 B DA 1 ? ? C4 B DA 1 ? ? 115.10 110.60 4.50 0.50 N 33 1 C5 B DA 1 ? ? C6 B DA 1 ? ? N1 B DA 1 ? ? 122.55 117.70 4.85 0.50 N 34 1 N9 B DA 1 ? ? C4 B DA 1 ? ? C5 B DA 1 ? ? 108.26 105.80 2.46 0.40 N 35 1 C6 B DA 1 ? ? C5 B DA 1 ? ? N7 B DA 1 ? ? 137.28 132.30 4.98 0.70 N 36 1 "C5'" B DC 2 ? ? "C4'" B DC 2 ? ? "O4'" B DC 2 ? ? 118.37 109.80 8.57 1.10 N 37 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 110.50 108.30 2.20 0.30 N 38 1 N1 B DC 2 ? ? C2 B DC 2 ? ? N3 B DC 2 ? ? 114.59 119.20 -4.61 0.70 N 39 1 N1 B DC 2 ? ? C2 B DC 2 ? ? O2 B DC 2 ? ? 127.23 118.90 8.33 0.60 N 40 1 "C5'" B DC 3 ? ? "C4'" B DC 3 ? ? "O4'" B DC 3 ? ? 117.85 109.80 8.05 1.10 N 41 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 113.07 108.30 4.77 0.30 N 42 1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 112.03 108.30 3.73 0.30 N 43 1 C6 B DC 4 ? ? N1 B DC 4 ? ? C2 B DC 4 ? ? 122.74 120.30 2.44 0.40 N 44 1 N1 B DC 4 ? ? C2 B DC 4 ? ? O2 B DC 4 ? ? 123.21 118.90 4.31 0.60 N 45 1 N3 B DG 5 ? ? C4 B DG 5 ? ? C5 B DG 5 ? ? 124.39 128.60 -4.21 0.50 N 46 1 N3 B DG 5 ? ? C4 B DG 5 ? ? N9 B DG 5 ? ? 129.67 126.00 3.67 0.60 N 47 1 N1 B DG 5 ? ? C6 B DG 5 ? ? O6 B DG 5 ? ? 115.99 119.90 -3.91 0.60 N 48 1 N9 B DG 6 ? ? "C1'" B DG 6 ? ? "C2'" B DG 6 ? ? 126.37 114.30 12.07 1.40 N 49 1 N3 B DG 6 ? ? C4 B DG 6 ? ? C5 B DG 6 ? ? 124.42 128.60 -4.18 0.50 N 50 1 C4 B DG 6 ? ? C5 B DG 6 ? ? N7 B DG 6 ? ? 108.25 110.80 -2.55 0.40 N 51 1 C6 B DG 6 ? ? C5 B DG 6 ? ? N7 B DG 6 ? ? 134.22 130.40 3.82 0.60 N 52 1 N1 B DG 6 ? ? C6 B DG 6 ? ? O6 B DG 6 ? ? 115.82 119.90 -4.08 0.60 N 53 1 N3 B DG 7 ? ? C4 B DG 7 ? ? C5 B DG 7 ? ? 124.69 128.60 -3.91 0.50 N 54 1 C4 B DG 7 ? ? C5 B DG 7 ? ? N7 B DG 7 ? ? 107.88 110.80 -2.92 0.40 N 55 1 C6 B DG 7 ? ? C5 B DG 7 ? ? N7 B DG 7 ? ? 134.92 130.40 4.52 0.60 N 56 1 N1 B DG 7 ? ? C6 B DG 7 ? ? O6 B DG 7 ? ? 115.63 119.90 -4.27 0.60 N 57 1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.94 108.30 4.64 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 3 ? ? 0.071 'SIDE CHAIN' 2 1 DG A 6 ? ? 0.068 'SIDE CHAIN' 3 1 DC B 3 ? ? 0.076 'SIDE CHAIN' 4 1 DG B 6 ? ? 0.067 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1BP8 _pdbx_nmr_ensemble.conformers_calculated_total_number 7 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 PCOSY 1 3 1 TOCSY 1 # _pdbx_nmr_details.entry_id 1BP8 _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING HOMONUCLEAR TWO DIMENSIONAL NMR SPECTROSCOPY' # _pdbx_nmr_refine.entry_id 1BP8 _pdbx_nmr_refine.method 'FULL RELAXATION MATRIX ANALYSIS AND RESTRAINED MOLECULAR DYNAMICS' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JOURNAL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CHARMM 23.2 'MSI, WALTHAM , MA' 1 'structure solution' VNMR ? ? 2 'structure solution' MARDIGRAS ? ? 3 'structure solution' 'CORMA CHARMM' CHARMM ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DDA C1 C N R 71 DDA C2 C N N 72 DDA C3 C N R 73 DDA C4 C N S 74 DDA C5 C N R 75 DDA C6 C N N 76 DDA O5 O N N 77 DDA O1 O N N 78 DDA O3 O N N 79 DDA O4 O N N 80 DDA H1 H N N 81 DDA H21 H N N 82 DDA H22 H N N 83 DDA H3 H N N 84 DDA H4 H N N 85 DDA H5 H N N 86 DDA H61 H N N 87 DDA H62 H N N 88 DDA H63 H N N 89 DDA HO1 H N N 90 DDA HO3 H N N 91 DDA HO4 H N N 92 DDL C1 C N R 93 DDL C2 C N N 94 DDL C3 C N R 95 DDL C4 C N R 96 DDL C5 C N R 97 DDL C6 C N N 98 DDL O1 O N N 99 DDL O5 O N N 100 DDL O3 O N N 101 DDL O4 O N N 102 DDL H1 H N N 103 DDL H2 H N N 104 DDL H22 H N N 105 DDL H3 H N N 106 DDL H4 H N N 107 DDL H5 H N N 108 DDL H61 H N N 109 DDL H62 H N N 110 DDL H63 H N N 111 DDL HO1 H N N 112 DDL HO3 H N N 113 DDL HO4 H N N 114 DG OP3 O N N 115 DG P P N N 116 DG OP1 O N N 117 DG OP2 O N N 118 DG "O5'" O N N 119 DG "C5'" C N N 120 DG "C4'" C N R 121 DG "O4'" O N N 122 DG "C3'" C N S 123 DG "O3'" O N N 124 DG "C2'" C N N 125 DG "C1'" C N R 126 DG N9 N Y N 127 DG C8 C Y N 128 DG N7 N Y N 129 DG C5 C Y N 130 DG C6 C N N 131 DG O6 O N N 132 DG N1 N N N 133 DG C2 C N N 134 DG N2 N N N 135 DG N3 N N N 136 DG C4 C Y N 137 DG HOP3 H N N 138 DG HOP2 H N N 139 DG "H5'" H N N 140 DG "H5''" H N N 141 DG "H4'" H N N 142 DG "H3'" H N N 143 DG "HO3'" H N N 144 DG "H2'" H N N 145 DG "H2''" H N N 146 DG "H1'" H N N 147 DG H8 H N N 148 DG H1 H N N 149 DG H21 H N N 150 DG H22 H N N 151 DT OP3 O N N 152 DT P P N N 153 DT OP1 O N N 154 DT OP2 O N N 155 DT "O5'" O N N 156 DT "C5'" C N N 157 DT "C4'" C N R 158 DT "O4'" O N N 159 DT "C3'" C N S 160 DT "O3'" O N N 161 DT "C2'" C N N 162 DT "C1'" C N R 163 DT N1 N N N 164 DT C2 C N N 165 DT O2 O N N 166 DT N3 N N N 167 DT C4 C N N 168 DT O4 O N N 169 DT C5 C N N 170 DT C7 C N N 171 DT C6 C N N 172 DT HOP3 H N N 173 DT HOP2 H N N 174 DT "H5'" H N N 175 DT "H5''" H N N 176 DT "H4'" H N N 177 DT "H3'" H N N 178 DT "HO3'" H N N 179 DT "H2'" H N N 180 DT "H2''" H N N 181 DT "H1'" H N N 182 DT H3 H N N 183 DT H71 H N N 184 DT H72 H N N 185 DT H73 H N N 186 DT H6 H N N 187 DXB C1 C N N 188 DXB O1 O N N 189 DXB C9A C Y N 190 DXB C2 C N N 191 DXB C3 C N R 192 DXB C4 C N N 193 DXB C4A C Y N 194 DXB C10 C Y N 195 DXB C5A C Y N 196 DXB C5 C Y N 197 DXB C6 C Y N 198 DXB C7 C Y N 199 DXB CC7 C N N 200 DXB C8 C Y N 201 DXB O8 O N N 202 DXB C8A C Y N 203 DXB C9 C Y N 204 DXB O9 O N N 205 DXB CME C N N 206 DXB C1S C N S 207 DXB O1S O N N 208 DXB C2S C N N 209 DXB O2S O N N 210 DXB C3S C N S 211 DXB O3S O N N 212 DXB C4S C N S 213 DXB O4S O N N 214 DXB C5S C N N 215 DXB H21 H N N 216 DXB H22 H N N 217 DXB H3 H N N 218 DXB H4A H N N 219 DXB H4E H N N 220 DXB H10 H N N 221 DXB H5 H N N 222 DXB H6 H N N 223 DXB HM71 H N N 224 DXB HM72 H N N 225 DXB HM73 H N N 226 DXB HO8 H N N 227 DXB HO9 H N N 228 DXB HM11 H N N 229 DXB HM12 H N N 230 DXB HM13 H N N 231 DXB HS1 H N N 232 DXB HS3 H N N 233 DXB HO3 H N N 234 DXB HS4 H N N 235 DXB HO4 H N N 236 DXB HM51 H N N 237 DXB HM52 H N N 238 DXB HM53 H N N 239 MDA C1 C N R 240 MDA C2 C N N 241 MDA C3 C N S 242 MDA C4 C N R 243 MDA C5 C N R 244 MDA C6 C N N 245 MDA "C3'" C N N 246 MDA O1 O N N 247 MDA O5 O N N 248 MDA O3 O N N 249 MDA O4 O N N 250 MDA H1 H N N 251 MDA H2 H N N 252 MDA H22 H N N 253 MDA H4 H N N 254 MDA H5 H N N 255 MDA H61 H N N 256 MDA H62 H N N 257 MDA H63 H N N 258 MDA "H3'1" H N N 259 MDA "H3'2" H N N 260 MDA "H3'3" H N N 261 MDA HO1 H N N 262 MDA HO3 H N N 263 MDA HO4 H N N 264 MG MG MG N N 265 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DDA C1 C2 sing N N 74 DDA C1 O5 sing N N 75 DDA C1 O1 sing N N 76 DDA C1 H1 sing N N 77 DDA C2 C3 sing N N 78 DDA C2 H21 sing N N 79 DDA C2 H22 sing N N 80 DDA C3 C4 sing N N 81 DDA C3 O3 sing N N 82 DDA C3 H3 sing N N 83 DDA C4 C5 sing N N 84 DDA C4 O4 sing N N 85 DDA C4 H4 sing N N 86 DDA C5 C6 sing N N 87 DDA C5 O5 sing N N 88 DDA C5 H5 sing N N 89 DDA C6 H61 sing N N 90 DDA C6 H62 sing N N 91 DDA C6 H63 sing N N 92 DDA O1 HO1 sing N N 93 DDA O3 HO3 sing N N 94 DDA O4 HO4 sing N N 95 DDL C1 C2 sing N N 96 DDL C1 O1 sing N N 97 DDL C1 O5 sing N N 98 DDL C1 H1 sing N N 99 DDL C2 C3 sing N N 100 DDL C2 H2 sing N N 101 DDL C2 H22 sing N N 102 DDL C3 C4 sing N N 103 DDL C3 O3 sing N N 104 DDL C3 H3 sing N N 105 DDL C4 C5 sing N N 106 DDL C4 O4 sing N N 107 DDL C4 H4 sing N N 108 DDL C5 C6 sing N N 109 DDL C5 O5 sing N N 110 DDL C5 H5 sing N N 111 DDL C6 H61 sing N N 112 DDL C6 H62 sing N N 113 DDL C6 H63 sing N N 114 DDL O1 HO1 sing N N 115 DDL O3 HO3 sing N N 116 DDL O4 HO4 sing N N 117 DG OP3 P sing N N 118 DG OP3 HOP3 sing N N 119 DG P OP1 doub N N 120 DG P OP2 sing N N 121 DG P "O5'" sing N N 122 DG OP2 HOP2 sing N N 123 DG "O5'" "C5'" sing N N 124 DG "C5'" "C4'" sing N N 125 DG "C5'" "H5'" sing N N 126 DG "C5'" "H5''" sing N N 127 DG "C4'" "O4'" sing N N 128 DG "C4'" "C3'" sing N N 129 DG "C4'" "H4'" sing N N 130 DG "O4'" "C1'" sing N N 131 DG "C3'" "O3'" sing N N 132 DG "C3'" "C2'" sing N N 133 DG "C3'" "H3'" sing N N 134 DG "O3'" "HO3'" sing N N 135 DG "C2'" "C1'" sing N N 136 DG "C2'" "H2'" sing N N 137 DG "C2'" "H2''" sing N N 138 DG "C1'" N9 sing N N 139 DG "C1'" "H1'" sing N N 140 DG N9 C8 sing Y N 141 DG N9 C4 sing Y N 142 DG C8 N7 doub Y N 143 DG C8 H8 sing N N 144 DG N7 C5 sing Y N 145 DG C5 C6 sing N N 146 DG C5 C4 doub Y N 147 DG C6 O6 doub N N 148 DG C6 N1 sing N N 149 DG N1 C2 sing N N 150 DG N1 H1 sing N N 151 DG C2 N2 sing N N 152 DG C2 N3 doub N N 153 DG N2 H21 sing N N 154 DG N2 H22 sing N N 155 DG N3 C4 sing N N 156 DT OP3 P sing N N 157 DT OP3 HOP3 sing N N 158 DT P OP1 doub N N 159 DT P OP2 sing N N 160 DT P "O5'" sing N N 161 DT OP2 HOP2 sing N N 162 DT "O5'" "C5'" sing N N 163 DT "C5'" "C4'" sing N N 164 DT "C5'" "H5'" sing N N 165 DT "C5'" "H5''" sing N N 166 DT "C4'" "O4'" sing N N 167 DT "C4'" "C3'" sing N N 168 DT "C4'" "H4'" sing N N 169 DT "O4'" "C1'" sing N N 170 DT "C3'" "O3'" sing N N 171 DT "C3'" "C2'" sing N N 172 DT "C3'" "H3'" sing N N 173 DT "O3'" "HO3'" sing N N 174 DT "C2'" "C1'" sing N N 175 DT "C2'" "H2'" sing N N 176 DT "C2'" "H2''" sing N N 177 DT "C1'" N1 sing N N 178 DT "C1'" "H1'" sing N N 179 DT N1 C2 sing N N 180 DT N1 C6 sing N N 181 DT C2 O2 doub N N 182 DT C2 N3 sing N N 183 DT N3 C4 sing N N 184 DT N3 H3 sing N N 185 DT C4 O4 doub N N 186 DT C4 C5 sing N N 187 DT C5 C7 sing N N 188 DT C5 C6 doub N N 189 DT C7 H71 sing N N 190 DT C7 H72 sing N N 191 DT C7 H73 sing N N 192 DT C6 H6 sing N N 193 DXB C1 O1 doub N N 194 DXB C1 C9A sing N N 195 DXB C1 C2 sing N N 196 DXB C9A C4A doub Y N 197 DXB C9A C9 sing Y N 198 DXB C2 C3 sing N N 199 DXB C2 H21 sing N N 200 DXB C2 H22 sing N N 201 DXB C3 C4 sing N N 202 DXB C3 C1S sing N N 203 DXB C3 H3 sing N N 204 DXB C4 C4A sing N N 205 DXB C4 H4A sing N N 206 DXB C4 H4E sing N N 207 DXB C4A C10 sing Y N 208 DXB C10 C5A doub Y N 209 DXB C10 H10 sing N N 210 DXB C5A C5 sing Y N 211 DXB C5A C8A sing Y N 212 DXB C5 C6 doub Y N 213 DXB C5 H5 sing N N 214 DXB C6 C7 sing Y N 215 DXB C6 H6 sing N N 216 DXB C7 CC7 sing N N 217 DXB C7 C8 doub Y N 218 DXB CC7 HM71 sing N N 219 DXB CC7 HM72 sing N N 220 DXB CC7 HM73 sing N N 221 DXB C8 O8 sing N N 222 DXB C8 C8A sing Y N 223 DXB O8 HO8 sing N N 224 DXB C8A C9 doub Y N 225 DXB C9 O9 sing N N 226 DXB O9 HO9 sing N N 227 DXB CME O1S sing N N 228 DXB CME HM11 sing N N 229 DXB CME HM12 sing N N 230 DXB CME HM13 sing N N 231 DXB C1S O1S sing N N 232 DXB C1S C2S sing N N 233 DXB C1S HS1 sing N N 234 DXB C2S O2S doub N N 235 DXB C2S C3S sing N N 236 DXB C3S O3S sing N N 237 DXB C3S C4S sing N N 238 DXB C3S HS3 sing N N 239 DXB O3S HO3 sing N N 240 DXB C4S O4S sing N N 241 DXB C4S C5S sing N N 242 DXB C4S HS4 sing N N 243 DXB O4S HO4 sing N N 244 DXB C5S HM51 sing N N 245 DXB C5S HM52 sing N N 246 DXB C5S HM53 sing N N 247 MDA C1 C2 sing N N 248 MDA C1 O1 sing N N 249 MDA C1 O5 sing N N 250 MDA C1 H1 sing N N 251 MDA C2 C3 sing N N 252 MDA C2 H2 sing N N 253 MDA C2 H22 sing N N 254 MDA C3 C4 sing N N 255 MDA C3 "C3'" sing N N 256 MDA C3 O3 sing N N 257 MDA C4 C5 sing N N 258 MDA C4 O4 sing N N 259 MDA C4 H4 sing N N 260 MDA C5 C6 sing N N 261 MDA C5 O5 sing N N 262 MDA C5 H5 sing N N 263 MDA C6 H61 sing N N 264 MDA C6 H62 sing N N 265 MDA C6 H63 sing N N 266 MDA "C3'" "H3'1" sing N N 267 MDA "C3'" "H3'2" sing N N 268 MDA "C3'" "H3'3" sing N N 269 MDA O1 HO1 sing N N 270 MDA O3 HO3 sing N N 271 MDA O4 HO4 sing N N 272 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BP8 'double helix' 1BP8 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 8 1_555 -0.422 -0.313 1.216 -5.896 -8.404 -22.361 1 A_DA1:DT8_B A 1 ? B 8 ? 20 1 1 A DC 2 1_555 B DG 7 1_555 -0.264 -0.163 0.912 -1.342 8.824 4.791 2 A_DC2:DG7_B A 2 ? B 7 ? 19 1 1 A DC 3 1_555 B DG 6 1_555 0.376 -0.124 -0.098 -4.274 -24.129 6.749 3 A_DC3:DG6_B A 3 ? B 6 ? 19 1 1 A DC 4 1_555 B DG 5 1_555 0.501 -0.002 0.481 -18.689 7.135 2.274 4 A_DC4:DG5_B A 4 ? B 5 ? 19 1 1 A DG 5 1_555 B DC 4 1_555 -0.472 0.019 0.515 19.615 -0.427 3.142 5 A_DG5:DC4_B A 5 ? B 4 ? 19 1 1 A DG 6 1_555 B DC 3 1_555 -0.254 -0.081 0.000 5.670 -21.658 5.755 6 A_DG6:DC3_B A 6 ? B 3 ? 19 1 1 A DG 7 1_555 B DC 2 1_555 0.339 -0.193 0.950 1.430 7.320 3.766 7 A_DG7:DC2_B A 7 ? B 2 ? 19 1 1 A DT 8 1_555 B DA 1 1_555 0.211 -0.243 1.344 5.703 -4.486 -20.935 8 A_DT8:DA1_B A 8 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 8 1_555 A DC 2 1_555 B DG 7 1_555 1.626 -1.457 3.256 4.797 4.105 35.632 -2.927 -1.941 3.258 6.643 -7.764 36.169 1 AA_DA1DC2:DG7DT8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DC 2 1_555 B DG 7 1_555 A DC 3 1_555 B DG 6 1_555 0.130 -0.426 3.017 12.328 9.419 35.082 -1.735 1.223 2.714 14.767 -19.327 38.261 2 AA_DC2DC3:DG6DG7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DC 3 1_555 B DG 6 1_555 A DC 4 1_555 B DG 5 1_555 -0.334 -0.741 3.529 -5.699 8.827 32.985 -2.692 -0.373 3.242 15.077 9.734 34.574 3 AA_DC3DC4:DG5DG6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DC 4 1_555 B DG 5 1_555 A DG 5 1_555 B DC 4 1_555 0.194 -0.496 2.246 0.365 0.959 25.778 -1.294 -0.365 2.229 2.148 -0.818 25.798 4 AA_DC4DG5:DC4DG5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DG 5 1_555 B DC 4 1_555 A DG 6 1_555 B DC 3 1_555 0.220 -0.763 3.446 4.894 7.857 35.417 -2.336 0.348 3.211 12.651 -7.879 36.569 5 AA_DG5DG6:DC3DC4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DG 6 1_555 B DC 3 1_555 A DG 7 1_555 B DC 2 1_555 -0.116 -0.457 3.033 -11.248 11.106 34.963 -1.976 -1.119 2.685 17.427 17.649 38.268 6 AA_DG6DG7:DC2DC3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A DG 7 1_555 B DC 2 1_555 A DT 8 1_555 B DA 1 1_555 -1.531 -1.550 3.310 -4.577 8.022 32.845 -3.906 1.892 3.038 13.849 7.902 34.085 7 AA_DG7DT8:DA1DC2_BB A 7 ? B 2 ? A 8 ? B 1 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 DDA 1 n 2 DDA 2 n 3 DDA 1 n 3 DDL 2 n 3 MDA 3 n # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'INOVA 600' _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1BP8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P # loop_