data_1BPB
#
_entry.id 1BPB
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1BPB pdb_00001bpb 10.2210/pdb1bpb/pdb
WWPDB D_1000171978 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1994-06-22
2 'Structure model' 1 1 2008-03-24
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2011-11-16
5 'Structure model' 2 0 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 5 'Structure model' 'Atomic model'
5 5 'Structure model' 'Data collection'
6 5 'Structure model' 'Database references'
7 5 'Structure model' Other
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' atom_site
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 5 'Structure model' pdbx_database_status
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_atom_site.occupancy'
2 5 'Structure model' '_database_2.pdbx_DOI'
3 5 'Structure model' '_database_2.pdbx_database_accession'
4 5 'Structure model' '_pdbx_database_status.process_site'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1BPB
_pdbx_database_status.recvd_initial_deposition_date 1994-04-12
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sawaya, M.R.' 1
'Pelletier, H.' 2
'Kumar, A.' 3
'Wilson, S.H.' 4
'Kraut, J.' 5
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.'
Science 264 1930 1935 1994 SCIEAS US 0036-8075 0038 ? 7516581 ?
1 'Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template-Primer, and ddCTP'
Science 264 1891 ? 1994 SCIEAS US 0036-8075 0038 ? ? ?
2 'Studies of the Domain Structure of Mammalian DNA Polymerase Beta. Identification of a Discrete Template Binding Domain'
J.Biol.Chem. 265 2124 ? 1990 JBCHA3 US 0021-9258 0071 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Sawaya, M.R.' 1 ?
primary 'Pelletier, H.' 2 ?
primary 'Kumar, A.' 3 ?
primary 'Wilson, S.H.' 4 ?
primary 'Kraut, J.' 5 ?
1 'Pelletier, H.' 6 ?
1 'Sawaya, M.R.' 7 ?
1 'Wilson, S.H.' 8 ?
1 'Kraut, J.' 9 ?
2 'Kumar, A.' 10 ?
2 'Widen, S.G.' 11 ?
2 'Williams, K.R.' 12 ?
2 'Kedar, P.' 13 ?
2 'Karpel, R.L.' 14 ?
2 'Wilson, S.H.' 15 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'DNA POLYMERASE BETA' 28774.527 1 2.7.7.7 ? ? ?
2 water nat water 18.015 90 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;IRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVK
KLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDE
NEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQWRY
REPKDRSE
;
_entity_poly.pdbx_seq_one_letter_code_can
;IRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVK
KLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDE
NEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQWRY
REPKDRSE
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ILE n
1 2 ARG n
1 3 GLN n
1 4 ASP n
1 5 ASP n
1 6 THR n
1 7 SER n
1 8 SER n
1 9 SER n
1 10 ILE n
1 11 ASN n
1 12 PHE n
1 13 LEU n
1 14 THR n
1 15 ARG n
1 16 VAL n
1 17 THR n
1 18 GLY n
1 19 ILE n
1 20 GLY n
1 21 PRO n
1 22 SER n
1 23 ALA n
1 24 ALA n
1 25 ARG n
1 26 LYS n
1 27 LEU n
1 28 VAL n
1 29 ASP n
1 30 GLU n
1 31 GLY n
1 32 ILE n
1 33 LYS n
1 34 THR n
1 35 LEU n
1 36 GLU n
1 37 ASP n
1 38 LEU n
1 39 ARG n
1 40 LYS n
1 41 ASN n
1 42 GLU n
1 43 ASP n
1 44 LYS n
1 45 LEU n
1 46 ASN n
1 47 HIS n
1 48 HIS n
1 49 GLN n
1 50 ARG n
1 51 ILE n
1 52 GLY n
1 53 LEU n
1 54 LYS n
1 55 TYR n
1 56 PHE n
1 57 GLU n
1 58 ASP n
1 59 PHE n
1 60 GLU n
1 61 LYS n
1 62 ARG n
1 63 ILE n
1 64 PRO n
1 65 ARG n
1 66 GLU n
1 67 GLU n
1 68 MET n
1 69 LEU n
1 70 GLN n
1 71 MET n
1 72 GLN n
1 73 ASP n
1 74 ILE n
1 75 VAL n
1 76 LEU n
1 77 ASN n
1 78 GLU n
1 79 VAL n
1 80 LYS n
1 81 LYS n
1 82 LEU n
1 83 ASP n
1 84 PRO n
1 85 GLU n
1 86 TYR n
1 87 ILE n
1 88 ALA n
1 89 THR n
1 90 VAL n
1 91 CYS n
1 92 GLY n
1 93 SER n
1 94 PHE n
1 95 ARG n
1 96 ARG n
1 97 GLY n
1 98 ALA n
1 99 GLU n
1 100 SER n
1 101 SER n
1 102 GLY n
1 103 ASP n
1 104 MET n
1 105 ASP n
1 106 VAL n
1 107 LEU n
1 108 LEU n
1 109 THR n
1 110 HIS n
1 111 PRO n
1 112 ASN n
1 113 PHE n
1 114 THR n
1 115 SER n
1 116 GLU n
1 117 SER n
1 118 SER n
1 119 LYS n
1 120 GLN n
1 121 PRO n
1 122 LYS n
1 123 LEU n
1 124 LEU n
1 125 HIS n
1 126 ARG n
1 127 VAL n
1 128 VAL n
1 129 GLU n
1 130 GLN n
1 131 LEU n
1 132 GLN n
1 133 LYS n
1 134 VAL n
1 135 ARG n
1 136 PHE n
1 137 ILE n
1 138 THR n
1 139 ASP n
1 140 THR n
1 141 LEU n
1 142 SER n
1 143 LYS n
1 144 GLY n
1 145 GLU n
1 146 THR n
1 147 LYS n
1 148 PHE n
1 149 MET n
1 150 GLY n
1 151 VAL n
1 152 CYS n
1 153 GLN n
1 154 LEU n
1 155 PRO n
1 156 SER n
1 157 GLU n
1 158 ASN n
1 159 ASP n
1 160 GLU n
1 161 ASN n
1 162 GLU n
1 163 TYR n
1 164 PRO n
1 165 HIS n
1 166 ARG n
1 167 ARG n
1 168 ILE n
1 169 ASP n
1 170 ILE n
1 171 ARG n
1 172 LEU n
1 173 ILE n
1 174 PRO n
1 175 LYS n
1 176 ASP n
1 177 GLN n
1 178 TYR n
1 179 TYR n
1 180 CYS n
1 181 GLY n
1 182 VAL n
1 183 LEU n
1 184 TYR n
1 185 PHE n
1 186 THR n
1 187 GLY n
1 188 SER n
1 189 ASP n
1 190 ILE n
1 191 PHE n
1 192 ASN n
1 193 LYS n
1 194 ASN n
1 195 MET n
1 196 ARG n
1 197 ALA n
1 198 HIS n
1 199 ALA n
1 200 LEU n
1 201 GLU n
1 202 LYS n
1 203 GLY n
1 204 PHE n
1 205 THR n
1 206 ILE n
1 207 ASN n
1 208 GLU n
1 209 TYR n
1 210 THR n
1 211 ILE n
1 212 ARG n
1 213 PRO n
1 214 LEU n
1 215 GLY n
1 216 VAL n
1 217 THR n
1 218 GLY n
1 219 VAL n
1 220 ALA n
1 221 GLY n
1 222 GLU n
1 223 PRO n
1 224 LEU n
1 225 PRO n
1 226 VAL n
1 227 ASP n
1 228 SER n
1 229 GLU n
1 230 GLN n
1 231 ASP n
1 232 ILE n
1 233 PHE n
1 234 ASP n
1 235 TYR n
1 236 ILE n
1 237 GLN n
1 238 TRP n
1 239 ARG n
1 240 TYR n
1 241 ARG n
1 242 GLU n
1 243 PRO n
1 244 LYS n
1 245 ASP n
1 246 ARG n
1 247 SER n
1 248 GLU n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name 'Norway rat'
_entity_src_gen.gene_src_genus Rattus
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name ?
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ?
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type BACTERIAL
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ILE 1 88 ? ? ? A . n
A 1 2 ARG 2 89 ? ? ? A . n
A 1 3 GLN 3 90 ? ? ? A . n
A 1 4 ASP 4 91 91 ASP ASP A . n
A 1 5 ASP 5 92 92 ASP ASP A . n
A 1 6 THR 6 93 93 THR THR A . n
A 1 7 SER 7 94 94 SER SER A . n
A 1 8 SER 8 95 95 SER SER A . n
A 1 9 SER 9 96 96 SER SER A . n
A 1 10 ILE 10 97 97 ILE ILE A . n
A 1 11 ASN 11 98 98 ASN ASN A . n
A 1 12 PHE 12 99 99 PHE PHE A . n
A 1 13 LEU 13 100 100 LEU LEU A . n
A 1 14 THR 14 101 101 THR THR A . n
A 1 15 ARG 15 102 102 ARG ARG A . n
A 1 16 VAL 16 103 103 VAL VAL A . n
A 1 17 THR 17 104 104 THR THR A . n
A 1 18 GLY 18 105 105 GLY GLY A . n
A 1 19 ILE 19 106 106 ILE ILE A . n
A 1 20 GLY 20 107 107 GLY GLY A . n
A 1 21 PRO 21 108 108 PRO PRO A . n
A 1 22 SER 22 109 109 SER SER A . n
A 1 23 ALA 23 110 110 ALA ALA A . n
A 1 24 ALA 24 111 111 ALA ALA A . n
A 1 25 ARG 25 112 112 ARG ARG A . n
A 1 26 LYS 26 113 113 LYS LYS A . n
A 1 27 LEU 27 114 114 LEU LEU A . n
A 1 28 VAL 28 115 115 VAL VAL A . n
A 1 29 ASP 29 116 116 ASP ASP A . n
A 1 30 GLU 30 117 117 GLU GLU A . n
A 1 31 GLY 31 118 118 GLY GLY A . n
A 1 32 ILE 32 119 119 ILE ILE A . n
A 1 33 LYS 33 120 120 LYS LYS A . n
A 1 34 THR 34 121 121 THR THR A . n
A 1 35 LEU 35 122 122 LEU LEU A . n
A 1 36 GLU 36 123 123 GLU GLU A . n
A 1 37 ASP 37 124 124 ASP ASP A . n
A 1 38 LEU 38 125 125 LEU LEU A . n
A 1 39 ARG 39 126 126 ARG ARG A . n
A 1 40 LYS 40 127 127 LYS LYS A . n
A 1 41 ASN 41 128 128 ASN ASN A . n
A 1 42 GLU 42 129 129 GLU GLU A . n
A 1 43 ASP 43 130 130 ASP ASP A . n
A 1 44 LYS 44 131 131 LYS LYS A . n
A 1 45 LEU 45 132 132 LEU LEU A . n
A 1 46 ASN 46 133 133 ASN ASN A . n
A 1 47 HIS 47 134 134 HIS HIS A . n
A 1 48 HIS 48 135 135 HIS HIS A . n
A 1 49 GLN 49 136 136 GLN GLN A . n
A 1 50 ARG 50 137 137 ARG ARG A . n
A 1 51 ILE 51 138 138 ILE ILE A . n
A 1 52 GLY 52 139 139 GLY GLY A . n
A 1 53 LEU 53 140 140 LEU LEU A . n
A 1 54 LYS 54 141 141 LYS LYS A . n
A 1 55 TYR 55 142 142 TYR TYR A . n
A 1 56 PHE 56 143 143 PHE PHE A . n
A 1 57 GLU 57 144 144 GLU GLU A . n
A 1 58 ASP 58 145 145 ASP ASP A . n
A 1 59 PHE 59 146 146 PHE PHE A . n
A 1 60 GLU 60 147 147 GLU GLU A . n
A 1 61 LYS 61 148 148 LYS LYS A . n
A 1 62 ARG 62 149 149 ARG ARG A . n
A 1 63 ILE 63 150 150 ILE ILE A . n
A 1 64 PRO 64 151 151 PRO PRO A . n
A 1 65 ARG 65 152 152 ARG ARG A . n
A 1 66 GLU 66 153 153 GLU GLU A . n
A 1 67 GLU 67 154 154 GLU GLU A . n
A 1 68 MET 68 155 155 MET MET A . n
A 1 69 LEU 69 156 156 LEU LEU A . n
A 1 70 GLN 70 157 157 GLN GLN A . n
A 1 71 MET 71 158 158 MET MET A . n
A 1 72 GLN 72 159 159 GLN GLN A . n
A 1 73 ASP 73 160 160 ASP ASP A . n
A 1 74 ILE 74 161 161 ILE ILE A . n
A 1 75 VAL 75 162 162 VAL VAL A . n
A 1 76 LEU 76 163 163 LEU LEU A . n
A 1 77 ASN 77 164 164 ASN ASN A . n
A 1 78 GLU 78 165 165 GLU GLU A . n
A 1 79 VAL 79 166 166 VAL VAL A . n
A 1 80 LYS 80 167 167 LYS LYS A . n
A 1 81 LYS 81 168 168 LYS LYS A . n
A 1 82 LEU 82 169 169 LEU LEU A . n
A 1 83 ASP 83 170 170 ASP ASP A . n
A 1 84 PRO 84 171 171 PRO PRO A . n
A 1 85 GLU 85 172 172 GLU GLU A . n
A 1 86 TYR 86 173 173 TYR TYR A . n
A 1 87 ILE 87 174 174 ILE ILE A . n
A 1 88 ALA 88 175 175 ALA ALA A . n
A 1 89 THR 89 176 176 THR THR A . n
A 1 90 VAL 90 177 177 VAL VAL A . n
A 1 91 CYS 91 178 178 CYS CYS A . n
A 1 92 GLY 92 179 179 GLY GLY A . n
A 1 93 SER 93 180 180 SER SER A . n
A 1 94 PHE 94 181 181 PHE PHE A . n
A 1 95 ARG 95 182 182 ARG ARG A . n
A 1 96 ARG 96 183 183 ARG ARG A . n
A 1 97 GLY 97 184 184 GLY GLY A . n
A 1 98 ALA 98 185 185 ALA ALA A . n
A 1 99 GLU 99 186 186 GLU GLU A . n
A 1 100 SER 100 187 187 SER SER A . n
A 1 101 SER 101 188 188 SER SER A . n
A 1 102 GLY 102 189 189 GLY GLY A . n
A 1 103 ASP 103 190 190 ASP ASP A . n
A 1 104 MET 104 191 191 MET MET A . n
A 1 105 ASP 105 192 192 ASP ASP A . n
A 1 106 VAL 106 193 193 VAL VAL A . n
A 1 107 LEU 107 194 194 LEU LEU A . n
A 1 108 LEU 108 195 195 LEU LEU A . n
A 1 109 THR 109 196 196 THR THR A . n
A 1 110 HIS 110 197 197 HIS HIS A . n
A 1 111 PRO 111 198 198 PRO PRO A . n
A 1 112 ASN 112 199 199 ASN ASN A . n
A 1 113 PHE 113 200 200 PHE PHE A . n
A 1 114 THR 114 201 201 THR THR A . n
A 1 115 SER 115 202 202 SER SER A . n
A 1 116 GLU 116 203 203 GLU GLU A . n
A 1 117 SER 117 204 204 SER SER A . n
A 1 118 SER 118 205 205 SER SER A . n
A 1 119 LYS 119 206 206 LYS LYS A . n
A 1 120 GLN 120 207 207 GLN GLN A . n
A 1 121 PRO 121 208 208 PRO PRO A . n
A 1 122 LYS 122 209 209 LYS LYS A . n
A 1 123 LEU 123 210 210 LEU LEU A . n
A 1 124 LEU 124 211 211 LEU LEU A . n
A 1 125 HIS 125 212 212 HIS HIS A . n
A 1 126 ARG 126 213 213 ARG ARG A . n
A 1 127 VAL 127 214 214 VAL VAL A . n
A 1 128 VAL 128 215 215 VAL VAL A . n
A 1 129 GLU 129 216 216 GLU GLU A . n
A 1 130 GLN 130 217 217 GLN GLN A . n
A 1 131 LEU 131 218 218 LEU LEU A . n
A 1 132 GLN 132 219 219 GLN GLN A . n
A 1 133 LYS 133 220 220 LYS LYS A . n
A 1 134 VAL 134 221 221 VAL VAL A . n
A 1 135 ARG 135 222 222 ARG ARG A . n
A 1 136 PHE 136 223 223 PHE PHE A . n
A 1 137 ILE 137 224 224 ILE ILE A . n
A 1 138 THR 138 225 225 THR THR A . n
A 1 139 ASP 139 226 226 ASP ASP A . n
A 1 140 THR 140 227 227 THR THR A . n
A 1 141 LEU 141 228 228 LEU LEU A . n
A 1 142 SER 142 229 229 SER SER A . n
A 1 143 LYS 143 230 230 LYS LYS A . n
A 1 144 GLY 144 231 231 GLY GLY A . n
A 1 145 GLU 145 232 232 GLU GLU A . n
A 1 146 THR 146 233 233 THR THR A . n
A 1 147 LYS 147 234 234 LYS LYS A . n
A 1 148 PHE 148 235 235 PHE PHE A . n
A 1 149 MET 149 236 236 MET MET A . n
A 1 150 GLY 150 237 237 GLY GLY A . n
A 1 151 VAL 151 238 238 VAL VAL A . n
A 1 152 CYS 152 239 239 CYS CYS A . n
A 1 153 GLN 153 240 240 GLN GLN A . n
A 1 154 LEU 154 241 241 LEU LEU A . n
A 1 155 PRO 155 242 242 PRO PRO A . n
A 1 156 SER 156 243 243 SER SER A . n
A 1 157 GLU 157 244 244 GLU GLU A . n
A 1 158 ASN 158 245 245 ASN ASN A . n
A 1 159 ASP 159 246 ? ? ? A . n
A 1 160 GLU 160 247 ? ? ? A . n
A 1 161 ASN 161 248 ? ? ? A . n
A 1 162 GLU 162 249 249 GLU GLU A . n
A 1 163 TYR 163 250 250 TYR TYR A . n
A 1 164 PRO 164 251 251 PRO PRO A . n
A 1 165 HIS 165 252 252 HIS HIS A . n
A 1 166 ARG 166 253 253 ARG ARG A . n
A 1 167 ARG 167 254 254 ARG ARG A . n
A 1 168 ILE 168 255 255 ILE ILE A . n
A 1 169 ASP 169 256 256 ASP ASP A . n
A 1 170 ILE 170 257 257 ILE ILE A . n
A 1 171 ARG 171 258 258 ARG ARG A . n
A 1 172 LEU 172 259 259 LEU LEU A . n
A 1 173 ILE 173 260 260 ILE ILE A . n
A 1 174 PRO 174 261 261 PRO PRO A . n
A 1 175 LYS 175 262 262 LYS LYS A . n
A 1 176 ASP 176 263 263 ASP ASP A . n
A 1 177 GLN 177 264 264 GLN GLN A . n
A 1 178 TYR 178 265 265 TYR TYR A . n
A 1 179 TYR 179 266 266 TYR TYR A . n
A 1 180 CYS 180 267 267 CYS CYS A . n
A 1 181 GLY 181 268 268 GLY GLY A . n
A 1 182 VAL 182 269 269 VAL VAL A . n
A 1 183 LEU 183 270 270 LEU LEU A . n
A 1 184 TYR 184 271 271 TYR TYR A . n
A 1 185 PHE 185 272 272 PHE PHE A . n
A 1 186 THR 186 273 273 THR THR A . n
A 1 187 GLY 187 274 274 GLY GLY A . n
A 1 188 SER 188 275 275 SER SER A . n
A 1 189 ASP 189 276 276 ASP ASP A . n
A 1 190 ILE 190 277 277 ILE ILE A . n
A 1 191 PHE 191 278 278 PHE PHE A . n
A 1 192 ASN 192 279 279 ASN ASN A . n
A 1 193 LYS 193 280 280 LYS LYS A . n
A 1 194 ASN 194 281 281 ASN ASN A . n
A 1 195 MET 195 282 282 MET MET A . n
A 1 196 ARG 196 283 283 ARG ARG A . n
A 1 197 ALA 197 284 284 ALA ALA A . n
A 1 198 HIS 198 285 285 HIS HIS A . n
A 1 199 ALA 199 286 286 ALA ALA A . n
A 1 200 LEU 200 287 287 LEU LEU A . n
A 1 201 GLU 201 288 288 GLU GLU A . n
A 1 202 LYS 202 289 289 LYS LYS A . n
A 1 203 GLY 203 290 290 GLY GLY A . n
A 1 204 PHE 204 291 291 PHE PHE A . n
A 1 205 THR 205 292 292 THR THR A . n
A 1 206 ILE 206 293 293 ILE ILE A . n
A 1 207 ASN 207 294 294 ASN ASN A . n
A 1 208 GLU 208 295 295 GLU GLU A . n
A 1 209 TYR 209 296 296 TYR TYR A . n
A 1 210 THR 210 297 297 THR THR A . n
A 1 211 ILE 211 298 298 ILE ILE A . n
A 1 212 ARG 212 299 299 ARG ARG A . n
A 1 213 PRO 213 300 300 PRO PRO A . n
A 1 214 LEU 214 301 301 LEU LEU A . n
A 1 215 GLY 215 302 302 GLY GLY A . n
A 1 216 VAL 216 303 303 VAL VAL A . n
A 1 217 THR 217 304 304 THR THR A . n
A 1 218 GLY 218 305 305 GLY GLY A . n
A 1 219 VAL 219 306 306 VAL VAL A . n
A 1 220 ALA 220 307 307 ALA ALA A . n
A 1 221 GLY 221 308 308 GLY GLY A . n
A 1 222 GLU 222 309 309 GLU GLU A . n
A 1 223 PRO 223 310 310 PRO PRO A . n
A 1 224 LEU 224 311 311 LEU LEU A . n
A 1 225 PRO 225 312 312 PRO PRO A . n
A 1 226 VAL 226 313 313 VAL VAL A . n
A 1 227 ASP 227 314 314 ASP ASP A . n
A 1 228 SER 228 315 315 SER SER A . n
A 1 229 GLU 229 316 316 GLU GLU A . n
A 1 230 GLN 230 317 317 GLN GLN A . n
A 1 231 ASP 231 318 318 ASP ASP A . n
A 1 232 ILE 232 319 319 ILE ILE A . n
A 1 233 PHE 233 320 320 PHE PHE A . n
A 1 234 ASP 234 321 321 ASP ASP A . n
A 1 235 TYR 235 322 322 TYR TYR A . n
A 1 236 ILE 236 323 323 ILE ILE A . n
A 1 237 GLN 237 324 324 GLN GLN A . n
A 1 238 TRP 238 325 325 TRP TRP A . n
A 1 239 ARG 239 326 326 ARG ARG A . n
A 1 240 TYR 240 327 327 TYR TYR A . n
A 1 241 ARG 241 328 328 ARG ARG A . n
A 1 242 GLU 242 329 329 GLU GLU A . n
A 1 243 PRO 243 330 330 PRO PRO A . n
A 1 244 LYS 244 331 331 LYS LYS A . n
A 1 245 ASP 245 332 332 ASP ASP A . n
A 1 246 ARG 246 333 333 ARG ARG A . n
A 1 247 SER 247 334 334 SER SER A . n
A 1 248 GLU 248 335 335 GLU GLU A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 401 401 HOH HOH A .
B 2 HOH 2 402 402 HOH HOH A .
B 2 HOH 3 403 403 HOH HOH A .
B 2 HOH 4 404 404 HOH HOH A .
B 2 HOH 5 405 405 HOH HOH A .
B 2 HOH 6 406 406 HOH HOH A .
B 2 HOH 7 407 407 HOH HOH A .
B 2 HOH 8 408 408 HOH HOH A .
B 2 HOH 9 409 409 HOH HOH A .
B 2 HOH 10 410 410 HOH HOH A .
B 2 HOH 11 411 411 HOH HOH A .
B 2 HOH 12 412 412 HOH HOH A .
B 2 HOH 13 413 413 HOH HOH A .
B 2 HOH 14 414 414 HOH HOH A .
B 2 HOH 15 415 415 HOH HOH A .
B 2 HOH 16 416 416 HOH HOH A .
B 2 HOH 17 417 417 HOH HOH A .
B 2 HOH 18 418 418 HOH HOH A .
B 2 HOH 19 419 419 HOH HOH A .
B 2 HOH 20 420 420 HOH HOH A .
B 2 HOH 21 421 421 HOH HOH A .
B 2 HOH 22 422 422 HOH HOH A .
B 2 HOH 23 423 423 HOH HOH A .
B 2 HOH 24 424 424 HOH HOH A .
B 2 HOH 25 425 425 HOH HOH A .
B 2 HOH 26 426 426 HOH HOH A .
B 2 HOH 27 427 427 HOH HOH A .
B 2 HOH 28 428 428 HOH HOH A .
B 2 HOH 29 429 429 HOH HOH A .
B 2 HOH 30 430 430 HOH HOH A .
B 2 HOH 31 433 433 HOH HOH A .
B 2 HOH 32 434 434 HOH HOH A .
B 2 HOH 33 435 435 HOH HOH A .
B 2 HOH 34 436 436 HOH HOH A .
B 2 HOH 35 437 437 HOH HOH A .
B 2 HOH 36 438 438 HOH HOH A .
B 2 HOH 37 439 439 HOH HOH A .
B 2 HOH 38 440 440 HOH HOH A .
B 2 HOH 39 441 441 HOH HOH A .
B 2 HOH 40 442 442 HOH HOH A .
B 2 HOH 41 443 443 HOH HOH A .
B 2 HOH 42 444 444 HOH HOH A .
B 2 HOH 43 445 445 HOH HOH A .
B 2 HOH 44 447 447 HOH HOH A .
B 2 HOH 45 448 448 HOH HOH A .
B 2 HOH 46 449 449 HOH HOH A .
B 2 HOH 47 450 450 HOH HOH A .
B 2 HOH 48 451 451 HOH HOH A .
B 2 HOH 49 454 454 HOH HOH A .
B 2 HOH 50 455 455 HOH HOH A .
B 2 HOH 51 456 456 HOH HOH A .
B 2 HOH 52 457 457 HOH HOH A .
B 2 HOH 53 458 458 HOH HOH A .
B 2 HOH 54 459 459 HOH HOH A .
B 2 HOH 55 460 460 HOH HOH A .
B 2 HOH 56 461 461 HOH HOH A .
B 2 HOH 57 462 462 HOH HOH A .
B 2 HOH 58 463 463 HOH HOH A .
B 2 HOH 59 464 464 HOH HOH A .
B 2 HOH 60 465 465 HOH HOH A .
B 2 HOH 61 466 466 HOH HOH A .
B 2 HOH 62 467 467 HOH HOH A .
B 2 HOH 63 468 468 HOH HOH A .
B 2 HOH 64 469 469 HOH HOH A .
B 2 HOH 65 470 470 HOH HOH A .
B 2 HOH 66 471 471 HOH HOH A .
B 2 HOH 67 472 472 HOH HOH A .
B 2 HOH 68 473 473 HOH HOH A .
B 2 HOH 69 474 474 HOH HOH A .
B 2 HOH 70 476 476 HOH HOH A .
B 2 HOH 71 477 477 HOH HOH A .
B 2 HOH 72 478 478 HOH HOH A .
B 2 HOH 73 479 479 HOH HOH A .
B 2 HOH 74 481 481 HOH HOH A .
B 2 HOH 75 482 482 HOH HOH A .
B 2 HOH 76 483 483 HOH HOH A .
B 2 HOH 77 484 484 HOH HOH A .
B 2 HOH 78 485 485 HOH HOH A .
B 2 HOH 79 486 486 HOH HOH A .
B 2 HOH 80 487 487 HOH HOH A .
B 2 HOH 81 488 488 HOH HOH A .
B 2 HOH 82 489 489 HOH HOH A .
B 2 HOH 83 490 490 HOH HOH A .
B 2 HOH 84 491 491 HOH HOH A .
B 2 HOH 85 492 492 HOH HOH A .
B 2 HOH 86 494 494 HOH HOH A .
B 2 HOH 87 496 496 HOH HOH A .
B 2 HOH 88 497 497 HOH HOH A .
B 2 HOH 89 498 498 HOH HOH A .
B 2 HOH 90 499 499 HOH HOH A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A ASP 91 ? CG ? A ASP 4 CG
2 1 Y 1 A ASP 91 ? OD1 ? A ASP 4 OD1
3 1 Y 1 A ASP 91 ? OD2 ? A ASP 4 OD2
4 1 Y 1 A ASP 92 ? CG ? A ASP 5 CG
5 1 Y 1 A ASP 92 ? OD1 ? A ASP 5 OD1
6 1 Y 1 A ASP 92 ? OD2 ? A ASP 5 OD2
7 1 Y 1 A SER 109 ? OG ? A SER 22 OG
8 1 Y 1 A ILE 119 ? CG1 ? A ILE 32 CG1
9 1 Y 1 A ILE 119 ? CG2 ? A ILE 32 CG2
10 1 Y 1 A ILE 119 ? CD1 ? A ILE 32 CD1
11 1 Y 1 A GLU 123 ? CG ? A GLU 36 CG
12 1 Y 1 A GLU 123 ? CD ? A GLU 36 CD
13 1 Y 1 A GLU 123 ? OE1 ? A GLU 36 OE1
14 1 Y 1 A GLU 123 ? OE2 ? A GLU 36 OE2
15 1 Y 1 A LYS 131 ? CG ? A LYS 44 CG
16 1 Y 1 A LYS 131 ? CD ? A LYS 44 CD
17 1 Y 1 A LYS 131 ? CE ? A LYS 44 CE
18 1 Y 1 A LYS 131 ? NZ ? A LYS 44 NZ
19 1 Y 1 A LYS 206 ? NZ ? A LYS 119 NZ
20 1 Y 1 A LYS 220 ? CD ? A LYS 133 CD
21 1 Y 1 A LYS 220 ? CE ? A LYS 133 CE
22 1 Y 1 A LYS 220 ? NZ ? A LYS 133 NZ
23 1 Y 1 A SER 243 ? OG ? A SER 156 OG
24 1 Y 1 A GLU 244 ? CG ? A GLU 157 CG
25 1 Y 1 A GLU 244 ? CD ? A GLU 157 CD
26 1 Y 1 A GLU 244 ? OE1 ? A GLU 157 OE1
27 1 Y 1 A GLU 244 ? OE2 ? A GLU 157 OE2
28 1 Y 1 A ASN 245 ? CG ? A ASN 158 CG
29 1 Y 1 A ASN 245 ? OD1 ? A ASN 158 OD1
30 1 Y 1 A ASN 245 ? ND2 ? A ASN 158 ND2
31 1 Y 1 A LYS 280 ? CG ? A LYS 193 CG
32 1 Y 1 A LYS 280 ? CD ? A LYS 193 CD
33 1 Y 1 A LYS 280 ? CE ? A LYS 193 CE
34 1 Y 1 A LYS 280 ? NZ ? A LYS 193 NZ
35 1 Y 1 A VAL 303 ? CG1 ? A VAL 216 CG1
36 1 Y 1 A VAL 303 ? CG2 ? A VAL 216 CG2
37 1 Y 1 A THR 304 ? OG1 ? A THR 217 OG1
38 1 Y 1 A THR 304 ? CG2 ? A THR 217 CG2
39 1 Y 1 A VAL 306 ? CG1 ? A VAL 219 CG1
40 1 Y 1 A VAL 306 ? CG2 ? A VAL 219 CG2
41 1 Y 1 A ARG 326 ? CG ? A ARG 239 CG
42 1 Y 1 A ARG 326 ? CD ? A ARG 239 CD
43 1 Y 1 A ARG 326 ? NE ? A ARG 239 NE
44 1 Y 1 A ARG 326 ? CZ ? A ARG 239 CZ
45 1 Y 1 A ARG 326 ? NH1 ? A ARG 239 NH1
46 1 Y 1 A ARG 326 ? NH2 ? A ARG 239 NH2
#
_software.name TNT
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1BPB
_cell.length_a 120.576
_cell.length_b 63.520
_cell.length_c 38.215
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1BPB
_symmetry.space_group_name_H-M 'P 21 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 18
#
_exptl.entry_id 1BPB
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.54
_exptl_crystal.density_percent_sol 51.61
_exptl_crystal.description ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_refine.entry_id 1BPB
_refine.ls_number_reflns_obs 13634
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 2.3
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1930000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1934
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 90
_refine_hist.number_atoms_total 2024
_refine_hist.d_res_high 2.3
_refine_hist.d_res_low .
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
t_bond_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ?
t_angle_deg 3.0 ? ? ? 'X-RAY DIFFRACTION' ?
t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ?
t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ?
t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ?
t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ?
t_it ? ? ? ? 'X-RAY DIFFRACTION' ?
t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 1BPB
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1BPB
_struct.title 'CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1BPB
_struct_keywords.pdbx_keywords NUCLEOTIDYLTRANSFERASE
_struct_keywords.text NUCLEOTIDYLTRANSFERASE
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code DPOB_RAT
_struct_ref.entity_id 1
_struct_ref.pdbx_db_accession P06766
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_seq_one_letter_code
;SKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGK
LRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDI
VLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQL
PSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFD
YIQWRYREPKDRSE
;
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1BPB
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 248
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P06766
_struct_ref_seq.db_align_beg 87
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 334
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 88
_struct_ref_seq.pdbx_auth_seq_align_end 335
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 THR A 6 ? THR A 14 ? THR A 93 THR A 101 1 ? 9
HELX_P HELX_P2 2 GLY A 20 ? VAL A 28 ? GLY A 107 VAL A 115 1 ? 9
HELX_P HELX_P3 3 THR A 34 ? ASN A 41 ? THR A 121 ASN A 128 1 ? 8
HELX_P HELX_P4 4 GLU A 42 ? LEU A 45 ? GLU A 129 LEU A 132 5 ? 4
HELX_P HELX_P5 5 ASN A 46 ? TYR A 55 ? ASN A 133 TYR A 142 1 ? 10
HELX_P HELX_P6 6 GLU A 57 ? LYS A 61 ? GLU A 144 LYS A 148 5 ? 5
HELX_P HELX_P7 7 ARG A 65 ? ASP A 83 ? ARG A 152 ASP A 170 1 ? 19
HELX_P HELX_P8 8 CYS A 91 ? ARG A 96 ? CYS A 178 ARG A 183 1 ? 6
HELX_P HELX_P9 9 GLN A 120 ? VAL A 134 ? GLN A 207 VAL A 221 1 ? 15
HELX_P HELX_P10 10 PRO A 174 ? ASP A 176 ? PRO A 261 ASP A 263 5 ? 3
HELX_P HELX_P11 11 GLN A 177 ? GLY A 187 ? GLN A 264 GLY A 274 1 ? 11
HELX_P HELX_P12 12 SER A 188 ? LYS A 202 ? SER A 275 LYS A 289 1 ? 15
HELX_P HELX_P13 13 SER A 228 ? ILE A 236 ? SER A 315 ILE A 323 1 ? 9
HELX_P HELX_P14 14 GLU A 242 ? ARG A 246 ? GLU A 329 ARG A 333 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id GLY
_struct_mon_prot_cis.label_seq_id 187
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id GLY
_struct_mon_prot_cis.auth_seq_id 274
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 SER
_struct_mon_prot_cis.pdbx_label_seq_id_2 188
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 SER
_struct_mon_prot_cis.pdbx_auth_seq_id_2 275
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle -0.65
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 2 ?
B ? 5 ?
C ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
C 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 ILE A 63 ? PRO A 64 ? ILE A 150 PRO A 151
A 2 SER A 100 ? SER A 101 ? SER A 187 SER A 188
B 1 ILE A 87 ? VAL A 90 ? ILE A 174 VAL A 177
B 2 MET A 104 ? THR A 109 ? MET A 191 THR A 196
B 3 ARG A 166 ? LEU A 172 ? ARG A 253 LEU A 259
B 4 LYS A 147 ? CYS A 152 ? LYS A 234 CYS A 239
B 5 ILE A 137 ? LYS A 143 ? ILE A 224 LYS A 230
C 1 PHE A 204 ? ILE A 206 ? PHE A 291 ILE A 293
C 2 ILE A 211 ? PRO A 213 ? ILE A 298 PRO A 300
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N ILE A 63 ? N ILE A 150 O SER A 101 ? O SER A 188
B 1 2 N THR A 89 ? N THR A 176 O LEU A 107 ? O LEU A 194
B 2 3 N MET A 104 ? N MET A 191 O ARG A 167 ? O ARG A 254
B 3 4 O ILE A 170 ? O ILE A 257 N PHE A 148 ? N PHE A 235
B 4 5 O VAL A 151 ? O VAL A 238 N THR A 138 ? N THR A 225
C 1 2 O THR A 205 ? O THR A 292 N ARG A 212 ? N ARG A 299
#
loop_
_pdbx_validate_symm_contact.id
_pdbx_validate_symm_contact.PDB_model_num
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_asym_id_1
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.PDB_ins_code_1
_pdbx_validate_symm_contact.label_alt_id_1
_pdbx_validate_symm_contact.site_symmetry_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_asym_id_2
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.PDB_ins_code_2
_pdbx_validate_symm_contact.label_alt_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_pdbx_validate_symm_contact.dist
1 1 O A HOH 468 ? ? 1_555 O A HOH 468 ? ? 2_565 0.30
2 1 OG A SER 204 ? ? 1_555 CE A LYS 206 ? ? 2_555 2.17
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 CD A GLU 154 ? ? OE1 A GLU 154 ? ? 1.324 1.252 0.072 0.011 N
2 1 CD A GLU 203 ? ? OE1 A GLU 203 ? ? 1.319 1.252 0.067 0.011 N
3 1 CD A GLU 216 ? ? OE1 A GLU 216 ? ? 1.324 1.252 0.072 0.011 N
4 1 CD A GLU 232 ? ? OE1 A GLU 232 ? ? 1.321 1.252 0.069 0.011 N
5 1 CD A GLU 309 ? ? OE1 A GLU 309 ? ? 1.322 1.252 0.070 0.011 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 NE A ARG 102 ? ? CZ A ARG 102 ? ? NH2 A ARG 102 ? ? 117.20 120.30 -3.10 0.50 N
2 1 NE A ARG 112 ? ? CZ A ARG 112 ? ? NH1 A ARG 112 ? ? 125.13 120.30 4.83 0.50 N
3 1 NE A ARG 112 ? ? CZ A ARG 112 ? ? NH2 A ARG 112 ? ? 116.93 120.30 -3.37 0.50 N
4 1 O A LYS 120 ? ? C A LYS 120 ? ? N A THR 121 ? ? 105.37 122.70 -17.33 1.60 Y
5 1 CA A ARG 126 ? ? C A ARG 126 ? ? N A LYS 127 ? ? 99.24 117.20 -17.96 2.20 Y
6 1 O A ARG 126 ? ? C A ARG 126 ? ? N A LYS 127 ? ? 138.29 122.70 15.59 1.60 Y
7 1 C A ARG 126 ? ? N A LYS 127 ? ? CA A LYS 127 ? ? 93.55 121.70 -28.15 2.50 Y
8 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD1 A ASP 130 ? ? 112.51 118.30 -5.79 0.90 N
9 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH1 A ARG 137 ? ? 123.65 120.30 3.35 0.50 N
10 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH2 A ARG 137 ? ? 116.84 120.30 -3.46 0.50 N
11 1 CB A ASP 145 ? ? CG A ASP 145 ? ? OD1 A ASP 145 ? ? 112.56 118.30 -5.74 0.90 N
12 1 NE A ARG 149 ? ? CZ A ARG 149 ? ? NH2 A ARG 149 ? ? 123.42 120.30 3.12 0.50 N
13 1 CB A PRO 151 ? ? CA A PRO 151 ? ? C A PRO 151 ? ? 98.88 111.70 -12.82 2.10 N
14 1 N A ARG 152 ? ? CA A ARG 152 ? ? CB A ARG 152 ? ? 122.65 110.60 12.05 1.80 N
15 1 CA A VAL 166 ? ? CB A VAL 166 ? ? CG1 A VAL 166 ? ? 120.01 110.90 9.11 1.50 N
16 1 CB A ASP 170 ? ? CG A ASP 170 ? ? OD1 A ASP 170 ? ? 112.05 118.30 -6.25 0.90 N
17 1 NE A ARG 182 ? ? CZ A ARG 182 ? ? NH1 A ARG 182 ? ? 124.72 120.30 4.42 0.50 N
18 1 NE A ARG 182 ? ? CZ A ARG 182 ? ? NH2 A ARG 182 ? ? 117.04 120.30 -3.26 0.50 N
19 1 NE A ARG 183 ? ? CZ A ARG 183 ? ? NH1 A ARG 183 ? ? 123.46 120.30 3.16 0.50 N
20 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD1 A ASP 190 ? ? 125.89 118.30 7.59 0.90 N
21 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD2 A ASP 190 ? ? 110.67 118.30 -7.63 0.90 N
22 1 CB A ASP 192 ? ? CG A ASP 192 ? ? OD1 A ASP 192 ? ? 111.11 118.30 -7.19 0.90 N
23 1 CB A ASP 192 ? ? CG A ASP 192 ? ? OD2 A ASP 192 ? ? 123.77 118.30 5.47 0.90 N
24 1 NE A ARG 213 ? ? CZ A ARG 213 ? ? NH1 A ARG 213 ? ? 123.58 120.30 3.28 0.50 N
25 1 NE A ARG 253 ? ? CZ A ARG 253 ? ? NH1 A ARG 253 ? ? 127.08 120.30 6.78 0.50 N
26 1 NE A ARG 253 ? ? CZ A ARG 253 ? ? NH2 A ARG 253 ? ? 114.63 120.30 -5.67 0.50 N
27 1 CB A TYR 266 ? ? CG A TYR 266 ? ? CD1 A TYR 266 ? ? 116.90 121.00 -4.10 0.60 N
28 1 CB A ASP 276 ? ? CG A ASP 276 ? ? OD1 A ASP 276 ? ? 111.93 118.30 -6.37 0.90 N
29 1 NE A ARG 283 ? ? CZ A ARG 283 ? ? NH1 A ARG 283 ? ? 124.04 120.30 3.74 0.50 N
30 1 CD A ARG 299 ? A NE A ARG 299 ? A CZ A ARG 299 ? A 132.44 123.60 8.84 1.40 N
31 1 NE A ARG 299 ? A CZ A ARG 299 ? A NH1 A ARG 299 ? A 125.12 120.30 4.82 0.50 N
32 1 NE A ARG 299 ? A CZ A ARG 299 ? A NH2 A ARG 299 ? A 116.98 120.30 -3.32 0.50 N
33 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD1 A ASP 314 ? ? 110.02 118.30 -8.28 0.90 N
34 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD2 A ASP 314 ? ? 124.14 118.30 5.84 0.90 N
35 1 CB A ASP 321 ? ? CG A ASP 321 ? ? OD1 A ASP 321 ? ? 111.12 118.30 -7.18 0.90 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 THR A 101 ? ? -54.91 -7.08
2 1 PRO A 108 ? ? -59.01 -70.99
3 1 LYS A 120 ? ? -116.83 -90.86
4 1 THR A 121 ? ? -28.00 166.58
5 1 ASN A 128 ? ? -95.14 49.87
6 1 GLU A 144 ? ? -53.19 -73.33
7 1 ASP A 145 ? ? -36.39 -35.47
8 1 ASP A 170 ? ? 176.31 106.10
9 1 CYS A 178 ? ? -88.08 -145.52
10 1 SER A 204 ? ? -48.35 -72.30
11 1 SER A 205 ? ? 42.29 85.68
12 1 LYS A 206 ? ? 163.65 41.43
13 1 ARG A 222 ? ? 80.29 32.44
14 1 GLU A 244 ? ? -141.40 -1.17
15 1 THR A 304 ? ? 83.65 -15.80
16 1 VAL A 306 ? ? -36.29 75.40
17 1 GLU A 309 ? ? 125.22 94.30
18 1 GLN A 324 ? ? 42.17 78.92
#
_pdbx_validate_chiral.id 1
_pdbx_validate_chiral.PDB_model_num 1
_pdbx_validate_chiral.auth_atom_id CA
_pdbx_validate_chiral.label_alt_id ?
_pdbx_validate_chiral.auth_asym_id A
_pdbx_validate_chiral.auth_comp_id GLU
_pdbx_validate_chiral.auth_seq_id 249
_pdbx_validate_chiral.PDB_ins_code ?
_pdbx_validate_chiral.details PLANAR
_pdbx_validate_chiral.omega .
#
loop_
_pdbx_validate_main_chain_plane.id
_pdbx_validate_main_chain_plane.PDB_model_num
_pdbx_validate_main_chain_plane.auth_comp_id
_pdbx_validate_main_chain_plane.auth_asym_id
_pdbx_validate_main_chain_plane.auth_seq_id
_pdbx_validate_main_chain_plane.PDB_ins_code
_pdbx_validate_main_chain_plane.label_alt_id
_pdbx_validate_main_chain_plane.improper_torsion_angle
1 1 LYS A 120 ? ? 15.07
2 1 THR A 297 ? ? -15.43
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 441 ? B HOH .
2 1 A HOH 477 ? B HOH .
#
_pdbx_entry_details.entry_id 1BPB
_pdbx_entry_details.compound_details
;DNA POLYMERASE BETA POSSESSES A PROTEOLYTICALLY SENSITIVE
REGION IN ITS AMINO ACID SEQUENCE (RESIDUES 80 - 90), AND
THE PRECISE CLEAVAGE SITE VARIES DEPENDING ON THE PROTEASE
OR THE CHEMICAL REAGENT USED IN THE CLEAVAGE REACTION (SEE
A. KUMAR ET AL., J. BIOL. CHEM. 265, 2124 (1990)). THE
AUTHORS SUSPECT THAT A BACTERIAL PROTEASE OF UNKNOWN ORIGIN
UNEXPECTEDLY CLEAVED THEIR INTACT ENZYME DURING THE
CRYSTALLIZATION PROCESS, RESULTING IN CRYSTALS OF THE
PROTEIN STRUCTURE REPORTED IN THIS ENTRY - THE 31-KD
COOH-TERMINAL DOMAIN (RESIDUES 88 - 335) OF DNA POLYMERASE
BETA. BECAUSE THE AUTHORS HAVE NOT DONE AN N-TERMINAL
ANALYSIS ON THE PROTEIN IN THEIR CRYSTALS, THEIR CHOICE OF
THE CLEAVAGE SITE (BETWEEN RESIDUES 87 AND 88) IS RATHER
ARBITRARY, AND IN FACT, THERE MAY EVEN BE VARIABLE
N-TERMINAL RESIDUES WITHIN ANY GIVEN CRYSTAL OF THIS
CLEAVED PROTEIN.
PLEASE NOTE THAT THIS ENTRY IS ONLY THE 31 KD DOMAIN AND
THE FIRST 8 KD DOMAIN IS NOT PRESENT IN THIS STRUCTURE.
PDB ADVISORY NOTICE:
WATER MOLECULES 441, 468, AND 477 ARE VERY CLOSE TO SPECIAL
POSITIONS.
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;SEQUENCE ADVISORY NOTICE
DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE.
SWISS-PROT ENTRY NAME: DPOB_RAT
SWISS-PROT RESIDUE PDB SEQRES
NAME NUMBER NAME CHAIN SEQ/INSERT CODE
ARG 227 LEU 228
THE PAPER BY KUMAR, ET AL., J.BIOL.CHEM., 265, 2124,
(1990) REPORTS A CORRECTION TO THE SEQUENCE GIVEN IN
SWISS-PROT (SEE REFERENCE 3 ABOVE).
;
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A ILE 88 ? A ILE 1
2 1 Y 1 A ARG 89 ? A ARG 2
3 1 Y 1 A GLN 90 ? A GLN 3
4 1 Y 1 A ASP 246 ? A ASP 159
5 1 Y 1 A GLU 247 ? A GLU 160
6 1 Y 1 A ASN 248 ? A ASN 161
7 1 N 0 A HOH 499 ? B HOH ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
HOH O O N N 158
HOH H1 H N N 159
HOH H2 H N N 160
ILE N N N N 161
ILE CA C N S 162
ILE C C N N 163
ILE O O N N 164
ILE CB C N S 165
ILE CG1 C N N 166
ILE CG2 C N N 167
ILE CD1 C N N 168
ILE OXT O N N 169
ILE H H N N 170
ILE H2 H N N 171
ILE HA H N N 172
ILE HB H N N 173
ILE HG12 H N N 174
ILE HG13 H N N 175
ILE HG21 H N N 176
ILE HG22 H N N 177
ILE HG23 H N N 178
ILE HD11 H N N 179
ILE HD12 H N N 180
ILE HD13 H N N 181
ILE HXT H N N 182
LEU N N N N 183
LEU CA C N S 184
LEU C C N N 185
LEU O O N N 186
LEU CB C N N 187
LEU CG C N N 188
LEU CD1 C N N 189
LEU CD2 C N N 190
LEU OXT O N N 191
LEU H H N N 192
LEU H2 H N N 193
LEU HA H N N 194
LEU HB2 H N N 195
LEU HB3 H N N 196
LEU HG H N N 197
LEU HD11 H N N 198
LEU HD12 H N N 199
LEU HD13 H N N 200
LEU HD21 H N N 201
LEU HD22 H N N 202
LEU HD23 H N N 203
LEU HXT H N N 204
LYS N N N N 205
LYS CA C N S 206
LYS C C N N 207
LYS O O N N 208
LYS CB C N N 209
LYS CG C N N 210
LYS CD C N N 211
LYS CE C N N 212
LYS NZ N N N 213
LYS OXT O N N 214
LYS H H N N 215
LYS H2 H N N 216
LYS HA H N N 217
LYS HB2 H N N 218
LYS HB3 H N N 219
LYS HG2 H N N 220
LYS HG3 H N N 221
LYS HD2 H N N 222
LYS HD3 H N N 223
LYS HE2 H N N 224
LYS HE3 H N N 225
LYS HZ1 H N N 226
LYS HZ2 H N N 227
LYS HZ3 H N N 228
LYS HXT H N N 229
MET N N N N 230
MET CA C N S 231
MET C C N N 232
MET O O N N 233
MET CB C N N 234
MET CG C N N 235
MET SD S N N 236
MET CE C N N 237
MET OXT O N N 238
MET H H N N 239
MET H2 H N N 240
MET HA H N N 241
MET HB2 H N N 242
MET HB3 H N N 243
MET HG2 H N N 244
MET HG3 H N N 245
MET HE1 H N N 246
MET HE2 H N N 247
MET HE3 H N N 248
MET HXT H N N 249
PHE N N N N 250
PHE CA C N S 251
PHE C C N N 252
PHE O O N N 253
PHE CB C N N 254
PHE CG C Y N 255
PHE CD1 C Y N 256
PHE CD2 C Y N 257
PHE CE1 C Y N 258
PHE CE2 C Y N 259
PHE CZ C Y N 260
PHE OXT O N N 261
PHE H H N N 262
PHE H2 H N N 263
PHE HA H N N 264
PHE HB2 H N N 265
PHE HB3 H N N 266
PHE HD1 H N N 267
PHE HD2 H N N 268
PHE HE1 H N N 269
PHE HE2 H N N 270
PHE HZ H N N 271
PHE HXT H N N 272
PRO N N N N 273
PRO CA C N S 274
PRO C C N N 275
PRO O O N N 276
PRO CB C N N 277
PRO CG C N N 278
PRO CD C N N 279
PRO OXT O N N 280
PRO H H N N 281
PRO HA H N N 282
PRO HB2 H N N 283
PRO HB3 H N N 284
PRO HG2 H N N 285
PRO HG3 H N N 286
PRO HD2 H N N 287
PRO HD3 H N N 288
PRO HXT H N N 289
SER N N N N 290
SER CA C N S 291
SER C C N N 292
SER O O N N 293
SER CB C N N 294
SER OG O N N 295
SER OXT O N N 296
SER H H N N 297
SER H2 H N N 298
SER HA H N N 299
SER HB2 H N N 300
SER HB3 H N N 301
SER HG H N N 302
SER HXT H N N 303
THR N N N N 304
THR CA C N S 305
THR C C N N 306
THR O O N N 307
THR CB C N R 308
THR OG1 O N N 309
THR CG2 C N N 310
THR OXT O N N 311
THR H H N N 312
THR H2 H N N 313
THR HA H N N 314
THR HB H N N 315
THR HG1 H N N 316
THR HG21 H N N 317
THR HG22 H N N 318
THR HG23 H N N 319
THR HXT H N N 320
TRP N N N N 321
TRP CA C N S 322
TRP C C N N 323
TRP O O N N 324
TRP CB C N N 325
TRP CG C Y N 326
TRP CD1 C Y N 327
TRP CD2 C Y N 328
TRP NE1 N Y N 329
TRP CE2 C Y N 330
TRP CE3 C Y N 331
TRP CZ2 C Y N 332
TRP CZ3 C Y N 333
TRP CH2 C Y N 334
TRP OXT O N N 335
TRP H H N N 336
TRP H2 H N N 337
TRP HA H N N 338
TRP HB2 H N N 339
TRP HB3 H N N 340
TRP HD1 H N N 341
TRP HE1 H N N 342
TRP HE3 H N N 343
TRP HZ2 H N N 344
TRP HZ3 H N N 345
TRP HH2 H N N 346
TRP HXT H N N 347
TYR N N N N 348
TYR CA C N S 349
TYR C C N N 350
TYR O O N N 351
TYR CB C N N 352
TYR CG C Y N 353
TYR CD1 C Y N 354
TYR CD2 C Y N 355
TYR CE1 C Y N 356
TYR CE2 C Y N 357
TYR CZ C Y N 358
TYR OH O N N 359
TYR OXT O N N 360
TYR H H N N 361
TYR H2 H N N 362
TYR HA H N N 363
TYR HB2 H N N 364
TYR HB3 H N N 365
TYR HD1 H N N 366
TYR HD2 H N N 367
TYR HE1 H N N 368
TYR HE2 H N N 369
TYR HH H N N 370
TYR HXT H N N 371
VAL N N N N 372
VAL CA C N S 373
VAL C C N N 374
VAL O O N N 375
VAL CB C N N 376
VAL CG1 C N N 377
VAL CG2 C N N 378
VAL OXT O N N 379
VAL H H N N 380
VAL H2 H N N 381
VAL HA H N N 382
VAL HB H N N 383
VAL HG11 H N N 384
VAL HG12 H N N 385
VAL HG13 H N N 386
VAL HG21 H N N 387
VAL HG22 H N N 388
VAL HG23 H N N 389
VAL HXT H N N 390
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
ILE N CA sing N N 152
ILE N H sing N N 153
ILE N H2 sing N N 154
ILE CA C sing N N 155
ILE CA CB sing N N 156
ILE CA HA sing N N 157
ILE C O doub N N 158
ILE C OXT sing N N 159
ILE CB CG1 sing N N 160
ILE CB CG2 sing N N 161
ILE CB HB sing N N 162
ILE CG1 CD1 sing N N 163
ILE CG1 HG12 sing N N 164
ILE CG1 HG13 sing N N 165
ILE CG2 HG21 sing N N 166
ILE CG2 HG22 sing N N 167
ILE CG2 HG23 sing N N 168
ILE CD1 HD11 sing N N 169
ILE CD1 HD12 sing N N 170
ILE CD1 HD13 sing N N 171
ILE OXT HXT sing N N 172
LEU N CA sing N N 173
LEU N H sing N N 174
LEU N H2 sing N N 175
LEU CA C sing N N 176
LEU CA CB sing N N 177
LEU CA HA sing N N 178
LEU C O doub N N 179
LEU C OXT sing N N 180
LEU CB CG sing N N 181
LEU CB HB2 sing N N 182
LEU CB HB3 sing N N 183
LEU CG CD1 sing N N 184
LEU CG CD2 sing N N 185
LEU CG HG sing N N 186
LEU CD1 HD11 sing N N 187
LEU CD1 HD12 sing N N 188
LEU CD1 HD13 sing N N 189
LEU CD2 HD21 sing N N 190
LEU CD2 HD22 sing N N 191
LEU CD2 HD23 sing N N 192
LEU OXT HXT sing N N 193
LYS N CA sing N N 194
LYS N H sing N N 195
LYS N H2 sing N N 196
LYS CA C sing N N 197
LYS CA CB sing N N 198
LYS CA HA sing N N 199
LYS C O doub N N 200
LYS C OXT sing N N 201
LYS CB CG sing N N 202
LYS CB HB2 sing N N 203
LYS CB HB3 sing N N 204
LYS CG CD sing N N 205
LYS CG HG2 sing N N 206
LYS CG HG3 sing N N 207
LYS CD CE sing N N 208
LYS CD HD2 sing N N 209
LYS CD HD3 sing N N 210
LYS CE NZ sing N N 211
LYS CE HE2 sing N N 212
LYS CE HE3 sing N N 213
LYS NZ HZ1 sing N N 214
LYS NZ HZ2 sing N N 215
LYS NZ HZ3 sing N N 216
LYS OXT HXT sing N N 217
MET N CA sing N N 218
MET N H sing N N 219
MET N H2 sing N N 220
MET CA C sing N N 221
MET CA CB sing N N 222
MET CA HA sing N N 223
MET C O doub N N 224
MET C OXT sing N N 225
MET CB CG sing N N 226
MET CB HB2 sing N N 227
MET CB HB3 sing N N 228
MET CG SD sing N N 229
MET CG HG2 sing N N 230
MET CG HG3 sing N N 231
MET SD CE sing N N 232
MET CE HE1 sing N N 233
MET CE HE2 sing N N 234
MET CE HE3 sing N N 235
MET OXT HXT sing N N 236
PHE N CA sing N N 237
PHE N H sing N N 238
PHE N H2 sing N N 239
PHE CA C sing N N 240
PHE CA CB sing N N 241
PHE CA HA sing N N 242
PHE C O doub N N 243
PHE C OXT sing N N 244
PHE CB CG sing N N 245
PHE CB HB2 sing N N 246
PHE CB HB3 sing N N 247
PHE CG CD1 doub Y N 248
PHE CG CD2 sing Y N 249
PHE CD1 CE1 sing Y N 250
PHE CD1 HD1 sing N N 251
PHE CD2 CE2 doub Y N 252
PHE CD2 HD2 sing N N 253
PHE CE1 CZ doub Y N 254
PHE CE1 HE1 sing N N 255
PHE CE2 CZ sing Y N 256
PHE CE2 HE2 sing N N 257
PHE CZ HZ sing N N 258
PHE OXT HXT sing N N 259
PRO N CA sing N N 260
PRO N CD sing N N 261
PRO N H sing N N 262
PRO CA C sing N N 263
PRO CA CB sing N N 264
PRO CA HA sing N N 265
PRO C O doub N N 266
PRO C OXT sing N N 267
PRO CB CG sing N N 268
PRO CB HB2 sing N N 269
PRO CB HB3 sing N N 270
PRO CG CD sing N N 271
PRO CG HG2 sing N N 272
PRO CG HG3 sing N N 273
PRO CD HD2 sing N N 274
PRO CD HD3 sing N N 275
PRO OXT HXT sing N N 276
SER N CA sing N N 277
SER N H sing N N 278
SER N H2 sing N N 279
SER CA C sing N N 280
SER CA CB sing N N 281
SER CA HA sing N N 282
SER C O doub N N 283
SER C OXT sing N N 284
SER CB OG sing N N 285
SER CB HB2 sing N N 286
SER CB HB3 sing N N 287
SER OG HG sing N N 288
SER OXT HXT sing N N 289
THR N CA sing N N 290
THR N H sing N N 291
THR N H2 sing N N 292
THR CA C sing N N 293
THR CA CB sing N N 294
THR CA HA sing N N 295
THR C O doub N N 296
THR C OXT sing N N 297
THR CB OG1 sing N N 298
THR CB CG2 sing N N 299
THR CB HB sing N N 300
THR OG1 HG1 sing N N 301
THR CG2 HG21 sing N N 302
THR CG2 HG22 sing N N 303
THR CG2 HG23 sing N N 304
THR OXT HXT sing N N 305
TRP N CA sing N N 306
TRP N H sing N N 307
TRP N H2 sing N N 308
TRP CA C sing N N 309
TRP CA CB sing N N 310
TRP CA HA sing N N 311
TRP C O doub N N 312
TRP C OXT sing N N 313
TRP CB CG sing N N 314
TRP CB HB2 sing N N 315
TRP CB HB3 sing N N 316
TRP CG CD1 doub Y N 317
TRP CG CD2 sing Y N 318
TRP CD1 NE1 sing Y N 319
TRP CD1 HD1 sing N N 320
TRP CD2 CE2 doub Y N 321
TRP CD2 CE3 sing Y N 322
TRP NE1 CE2 sing Y N 323
TRP NE1 HE1 sing N N 324
TRP CE2 CZ2 sing Y N 325
TRP CE3 CZ3 doub Y N 326
TRP CE3 HE3 sing N N 327
TRP CZ2 CH2 doub Y N 328
TRP CZ2 HZ2 sing N N 329
TRP CZ3 CH2 sing Y N 330
TRP CZ3 HZ3 sing N N 331
TRP CH2 HH2 sing N N 332
TRP OXT HXT sing N N 333
TYR N CA sing N N 334
TYR N H sing N N 335
TYR N H2 sing N N 336
TYR CA C sing N N 337
TYR CA CB sing N N 338
TYR CA HA sing N N 339
TYR C O doub N N 340
TYR C OXT sing N N 341
TYR CB CG sing N N 342
TYR CB HB2 sing N N 343
TYR CB HB3 sing N N 344
TYR CG CD1 doub Y N 345
TYR CG CD2 sing Y N 346
TYR CD1 CE1 sing Y N 347
TYR CD1 HD1 sing N N 348
TYR CD2 CE2 doub Y N 349
TYR CD2 HD2 sing N N 350
TYR CE1 CZ doub Y N 351
TYR CE1 HE1 sing N N 352
TYR CE2 CZ sing Y N 353
TYR CE2 HE2 sing N N 354
TYR CZ OH sing N N 355
TYR OH HH sing N N 356
TYR OXT HXT sing N N 357
VAL N CA sing N N 358
VAL N H sing N N 359
VAL N H2 sing N N 360
VAL CA C sing N N 361
VAL CA CB sing N N 362
VAL CA HA sing N N 363
VAL C O doub N N 364
VAL C OXT sing N N 365
VAL CB CG1 sing N N 366
VAL CB CG2 sing N N 367
VAL CB HB sing N N 368
VAL CG1 HG11 sing N N 369
VAL CG1 HG12 sing N N 370
VAL CG1 HG13 sing N N 371
VAL CG2 HG21 sing N N 372
VAL CG2 HG22 sing N N 373
VAL CG2 HG23 sing N N 374
VAL OXT HXT sing N N 375
#
_atom_sites.entry_id 1BPB
_atom_sites.fract_transf_matrix[1][1] 0.008294
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.015743
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.026168
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
_atom_sites_footnote.id 1
_atom_sites_footnote.text
'GLY 274 - SER 275 OMEGA =359.35 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION'
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_