data_1BPB # _entry.id 1BPB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BPB pdb_00001bpb 10.2210/pdb1bpb/pdb WWPDB D_1000171978 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-06-22 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 2 0 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.occupancy' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_database_status.process_site' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BPB _pdbx_database_status.recvd_initial_deposition_date 1994-04-12 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sawaya, M.R.' 1 'Pelletier, H.' 2 'Kumar, A.' 3 'Wilson, S.H.' 4 'Kraut, J.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.' Science 264 1930 1935 1994 SCIEAS US 0036-8075 0038 ? 7516581 ? 1 'Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template-Primer, and ddCTP' Science 264 1891 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? 2 'Studies of the Domain Structure of Mammalian DNA Polymerase Beta. Identification of a Discrete Template Binding Domain' J.Biol.Chem. 265 2124 ? 1990 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawaya, M.R.' 1 ? primary 'Pelletier, H.' 2 ? primary 'Kumar, A.' 3 ? primary 'Wilson, S.H.' 4 ? primary 'Kraut, J.' 5 ? 1 'Pelletier, H.' 6 ? 1 'Sawaya, M.R.' 7 ? 1 'Wilson, S.H.' 8 ? 1 'Kraut, J.' 9 ? 2 'Kumar, A.' 10 ? 2 'Widen, S.G.' 11 ? 2 'Williams, K.R.' 12 ? 2 'Kedar, P.' 13 ? 2 'Karpel, R.L.' 14 ? 2 'Wilson, S.H.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA POLYMERASE BETA' 28774.527 1 2.7.7.7 ? ? ? 2 water nat water 18.015 90 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVK KLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDE NEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQWRY REPKDRSE ; _entity_poly.pdbx_seq_one_letter_code_can ;IRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVK KLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDE NEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQWRY REPKDRSE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ARG n 1 3 GLN n 1 4 ASP n 1 5 ASP n 1 6 THR n 1 7 SER n 1 8 SER n 1 9 SER n 1 10 ILE n 1 11 ASN n 1 12 PHE n 1 13 LEU n 1 14 THR n 1 15 ARG n 1 16 VAL n 1 17 THR n 1 18 GLY n 1 19 ILE n 1 20 GLY n 1 21 PRO n 1 22 SER n 1 23 ALA n 1 24 ALA n 1 25 ARG n 1 26 LYS n 1 27 LEU n 1 28 VAL n 1 29 ASP n 1 30 GLU n 1 31 GLY n 1 32 ILE n 1 33 LYS n 1 34 THR n 1 35 LEU n 1 36 GLU n 1 37 ASP n 1 38 LEU n 1 39 ARG n 1 40 LYS n 1 41 ASN n 1 42 GLU n 1 43 ASP n 1 44 LYS n 1 45 LEU n 1 46 ASN n 1 47 HIS n 1 48 HIS n 1 49 GLN n 1 50 ARG n 1 51 ILE n 1 52 GLY n 1 53 LEU n 1 54 LYS n 1 55 TYR n 1 56 PHE n 1 57 GLU n 1 58 ASP n 1 59 PHE n 1 60 GLU n 1 61 LYS n 1 62 ARG n 1 63 ILE n 1 64 PRO n 1 65 ARG n 1 66 GLU n 1 67 GLU n 1 68 MET n 1 69 LEU n 1 70 GLN n 1 71 MET n 1 72 GLN n 1 73 ASP n 1 74 ILE n 1 75 VAL n 1 76 LEU n 1 77 ASN n 1 78 GLU n 1 79 VAL n 1 80 LYS n 1 81 LYS n 1 82 LEU n 1 83 ASP n 1 84 PRO n 1 85 GLU n 1 86 TYR n 1 87 ILE n 1 88 ALA n 1 89 THR n 1 90 VAL n 1 91 CYS n 1 92 GLY n 1 93 SER n 1 94 PHE n 1 95 ARG n 1 96 ARG n 1 97 GLY n 1 98 ALA n 1 99 GLU n 1 100 SER n 1 101 SER n 1 102 GLY n 1 103 ASP n 1 104 MET n 1 105 ASP n 1 106 VAL n 1 107 LEU n 1 108 LEU n 1 109 THR n 1 110 HIS n 1 111 PRO n 1 112 ASN n 1 113 PHE n 1 114 THR n 1 115 SER n 1 116 GLU n 1 117 SER n 1 118 SER n 1 119 LYS n 1 120 GLN n 1 121 PRO n 1 122 LYS n 1 123 LEU n 1 124 LEU n 1 125 HIS n 1 126 ARG n 1 127 VAL n 1 128 VAL n 1 129 GLU n 1 130 GLN n 1 131 LEU n 1 132 GLN n 1 133 LYS n 1 134 VAL n 1 135 ARG n 1 136 PHE n 1 137 ILE n 1 138 THR n 1 139 ASP n 1 140 THR n 1 141 LEU n 1 142 SER n 1 143 LYS n 1 144 GLY n 1 145 GLU n 1 146 THR n 1 147 LYS n 1 148 PHE n 1 149 MET n 1 150 GLY n 1 151 VAL n 1 152 CYS n 1 153 GLN n 1 154 LEU n 1 155 PRO n 1 156 SER n 1 157 GLU n 1 158 ASN n 1 159 ASP n 1 160 GLU n 1 161 ASN n 1 162 GLU n 1 163 TYR n 1 164 PRO n 1 165 HIS n 1 166 ARG n 1 167 ARG n 1 168 ILE n 1 169 ASP n 1 170 ILE n 1 171 ARG n 1 172 LEU n 1 173 ILE n 1 174 PRO n 1 175 LYS n 1 176 ASP n 1 177 GLN n 1 178 TYR n 1 179 TYR n 1 180 CYS n 1 181 GLY n 1 182 VAL n 1 183 LEU n 1 184 TYR n 1 185 PHE n 1 186 THR n 1 187 GLY n 1 188 SER n 1 189 ASP n 1 190 ILE n 1 191 PHE n 1 192 ASN n 1 193 LYS n 1 194 ASN n 1 195 MET n 1 196 ARG n 1 197 ALA n 1 198 HIS n 1 199 ALA n 1 200 LEU n 1 201 GLU n 1 202 LYS n 1 203 GLY n 1 204 PHE n 1 205 THR n 1 206 ILE n 1 207 ASN n 1 208 GLU n 1 209 TYR n 1 210 THR n 1 211 ILE n 1 212 ARG n 1 213 PRO n 1 214 LEU n 1 215 GLY n 1 216 VAL n 1 217 THR n 1 218 GLY n 1 219 VAL n 1 220 ALA n 1 221 GLY n 1 222 GLU n 1 223 PRO n 1 224 LEU n 1 225 PRO n 1 226 VAL n 1 227 ASP n 1 228 SER n 1 229 GLU n 1 230 GLN n 1 231 ASP n 1 232 ILE n 1 233 PHE n 1 234 ASP n 1 235 TYR n 1 236 ILE n 1 237 GLN n 1 238 TRP n 1 239 ARG n 1 240 TYR n 1 241 ARG n 1 242 GLU n 1 243 PRO n 1 244 LYS n 1 245 ASP n 1 246 ARG n 1 247 SER n 1 248 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACTERIAL _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 88 ? ? ? A . n A 1 2 ARG 2 89 ? ? ? A . n A 1 3 GLN 3 90 ? ? ? A . n A 1 4 ASP 4 91 91 ASP ASP A . n A 1 5 ASP 5 92 92 ASP ASP A . n A 1 6 THR 6 93 93 THR THR A . n A 1 7 SER 7 94 94 SER SER A . n A 1 8 SER 8 95 95 SER SER A . n A 1 9 SER 9 96 96 SER SER A . n A 1 10 ILE 10 97 97 ILE ILE A . n A 1 11 ASN 11 98 98 ASN ASN A . n A 1 12 PHE 12 99 99 PHE PHE A . n A 1 13 LEU 13 100 100 LEU LEU A . n A 1 14 THR 14 101 101 THR THR A . n A 1 15 ARG 15 102 102 ARG ARG A . n A 1 16 VAL 16 103 103 VAL VAL A . n A 1 17 THR 17 104 104 THR THR A . n A 1 18 GLY 18 105 105 GLY GLY A . n A 1 19 ILE 19 106 106 ILE ILE A . n A 1 20 GLY 20 107 107 GLY GLY A . n A 1 21 PRO 21 108 108 PRO PRO A . n A 1 22 SER 22 109 109 SER SER A . n A 1 23 ALA 23 110 110 ALA ALA A . n A 1 24 ALA 24 111 111 ALA ALA A . n A 1 25 ARG 25 112 112 ARG ARG A . n A 1 26 LYS 26 113 113 LYS LYS A . n A 1 27 LEU 27 114 114 LEU LEU A . n A 1 28 VAL 28 115 115 VAL VAL A . n A 1 29 ASP 29 116 116 ASP ASP A . n A 1 30 GLU 30 117 117 GLU GLU A . n A 1 31 GLY 31 118 118 GLY GLY A . n A 1 32 ILE 32 119 119 ILE ILE A . n A 1 33 LYS 33 120 120 LYS LYS A . n A 1 34 THR 34 121 121 THR THR A . n A 1 35 LEU 35 122 122 LEU LEU A . n A 1 36 GLU 36 123 123 GLU GLU A . n A 1 37 ASP 37 124 124 ASP ASP A . n A 1 38 LEU 38 125 125 LEU LEU A . n A 1 39 ARG 39 126 126 ARG ARG A . n A 1 40 LYS 40 127 127 LYS LYS A . n A 1 41 ASN 41 128 128 ASN ASN A . n A 1 42 GLU 42 129 129 GLU GLU A . n A 1 43 ASP 43 130 130 ASP ASP A . n A 1 44 LYS 44 131 131 LYS LYS A . n A 1 45 LEU 45 132 132 LEU LEU A . n A 1 46 ASN 46 133 133 ASN ASN A . n A 1 47 HIS 47 134 134 HIS HIS A . n A 1 48 HIS 48 135 135 HIS HIS A . n A 1 49 GLN 49 136 136 GLN GLN A . n A 1 50 ARG 50 137 137 ARG ARG A . n A 1 51 ILE 51 138 138 ILE ILE A . n A 1 52 GLY 52 139 139 GLY GLY A . n A 1 53 LEU 53 140 140 LEU LEU A . n A 1 54 LYS 54 141 141 LYS LYS A . n A 1 55 TYR 55 142 142 TYR TYR A . n A 1 56 PHE 56 143 143 PHE PHE A . n A 1 57 GLU 57 144 144 GLU GLU A . n A 1 58 ASP 58 145 145 ASP ASP A . n A 1 59 PHE 59 146 146 PHE PHE A . n A 1 60 GLU 60 147 147 GLU GLU A . n A 1 61 LYS 61 148 148 LYS LYS A . n A 1 62 ARG 62 149 149 ARG ARG A . n A 1 63 ILE 63 150 150 ILE ILE A . n A 1 64 PRO 64 151 151 PRO PRO A . n A 1 65 ARG 65 152 152 ARG ARG A . n A 1 66 GLU 66 153 153 GLU GLU A . n A 1 67 GLU 67 154 154 GLU GLU A . n A 1 68 MET 68 155 155 MET MET A . n A 1 69 LEU 69 156 156 LEU LEU A . n A 1 70 GLN 70 157 157 GLN GLN A . n A 1 71 MET 71 158 158 MET MET A . n A 1 72 GLN 72 159 159 GLN GLN A . n A 1 73 ASP 73 160 160 ASP ASP A . n A 1 74 ILE 74 161 161 ILE ILE A . n A 1 75 VAL 75 162 162 VAL VAL A . n A 1 76 LEU 76 163 163 LEU LEU A . n A 1 77 ASN 77 164 164 ASN ASN A . n A 1 78 GLU 78 165 165 GLU GLU A . n A 1 79 VAL 79 166 166 VAL VAL A . n A 1 80 LYS 80 167 167 LYS LYS A . n A 1 81 LYS 81 168 168 LYS LYS A . n A 1 82 LEU 82 169 169 LEU LEU A . n A 1 83 ASP 83 170 170 ASP ASP A . n A 1 84 PRO 84 171 171 PRO PRO A . n A 1 85 GLU 85 172 172 GLU GLU A . n A 1 86 TYR 86 173 173 TYR TYR A . n A 1 87 ILE 87 174 174 ILE ILE A . n A 1 88 ALA 88 175 175 ALA ALA A . n A 1 89 THR 89 176 176 THR THR A . n A 1 90 VAL 90 177 177 VAL VAL A . n A 1 91 CYS 91 178 178 CYS CYS A . n A 1 92 GLY 92 179 179 GLY GLY A . n A 1 93 SER 93 180 180 SER SER A . n A 1 94 PHE 94 181 181 PHE PHE A . n A 1 95 ARG 95 182 182 ARG ARG A . n A 1 96 ARG 96 183 183 ARG ARG A . n A 1 97 GLY 97 184 184 GLY GLY A . n A 1 98 ALA 98 185 185 ALA ALA A . n A 1 99 GLU 99 186 186 GLU GLU A . n A 1 100 SER 100 187 187 SER SER A . n A 1 101 SER 101 188 188 SER SER A . n A 1 102 GLY 102 189 189 GLY GLY A . n A 1 103 ASP 103 190 190 ASP ASP A . n A 1 104 MET 104 191 191 MET MET A . n A 1 105 ASP 105 192 192 ASP ASP A . n A 1 106 VAL 106 193 193 VAL VAL A . n A 1 107 LEU 107 194 194 LEU LEU A . n A 1 108 LEU 108 195 195 LEU LEU A . n A 1 109 THR 109 196 196 THR THR A . n A 1 110 HIS 110 197 197 HIS HIS A . n A 1 111 PRO 111 198 198 PRO PRO A . n A 1 112 ASN 112 199 199 ASN ASN A . n A 1 113 PHE 113 200 200 PHE PHE A . n A 1 114 THR 114 201 201 THR THR A . n A 1 115 SER 115 202 202 SER SER A . n A 1 116 GLU 116 203 203 GLU GLU A . n A 1 117 SER 117 204 204 SER SER A . n A 1 118 SER 118 205 205 SER SER A . n A 1 119 LYS 119 206 206 LYS LYS A . n A 1 120 GLN 120 207 207 GLN GLN A . n A 1 121 PRO 121 208 208 PRO PRO A . n A 1 122 LYS 122 209 209 LYS LYS A . n A 1 123 LEU 123 210 210 LEU LEU A . n A 1 124 LEU 124 211 211 LEU LEU A . n A 1 125 HIS 125 212 212 HIS HIS A . n A 1 126 ARG 126 213 213 ARG ARG A . n A 1 127 VAL 127 214 214 VAL VAL A . n A 1 128 VAL 128 215 215 VAL VAL A . n A 1 129 GLU 129 216 216 GLU GLU A . n A 1 130 GLN 130 217 217 GLN GLN A . n A 1 131 LEU 131 218 218 LEU LEU A . n A 1 132 GLN 132 219 219 GLN GLN A . n A 1 133 LYS 133 220 220 LYS LYS A . n A 1 134 VAL 134 221 221 VAL VAL A . n A 1 135 ARG 135 222 222 ARG ARG A . n A 1 136 PHE 136 223 223 PHE PHE A . n A 1 137 ILE 137 224 224 ILE ILE A . n A 1 138 THR 138 225 225 THR THR A . n A 1 139 ASP 139 226 226 ASP ASP A . n A 1 140 THR 140 227 227 THR THR A . n A 1 141 LEU 141 228 228 LEU LEU A . n A 1 142 SER 142 229 229 SER SER A . n A 1 143 LYS 143 230 230 LYS LYS A . n A 1 144 GLY 144 231 231 GLY GLY A . n A 1 145 GLU 145 232 232 GLU GLU A . n A 1 146 THR 146 233 233 THR THR A . n A 1 147 LYS 147 234 234 LYS LYS A . n A 1 148 PHE 148 235 235 PHE PHE A . n A 1 149 MET 149 236 236 MET MET A . n A 1 150 GLY 150 237 237 GLY GLY A . n A 1 151 VAL 151 238 238 VAL VAL A . n A 1 152 CYS 152 239 239 CYS CYS A . n A 1 153 GLN 153 240 240 GLN GLN A . n A 1 154 LEU 154 241 241 LEU LEU A . n A 1 155 PRO 155 242 242 PRO PRO A . n A 1 156 SER 156 243 243 SER SER A . n A 1 157 GLU 157 244 244 GLU GLU A . n A 1 158 ASN 158 245 245 ASN ASN A . n A 1 159 ASP 159 246 ? ? ? A . n A 1 160 GLU 160 247 ? ? ? A . n A 1 161 ASN 161 248 ? ? ? A . n A 1 162 GLU 162 249 249 GLU GLU A . n A 1 163 TYR 163 250 250 TYR TYR A . n A 1 164 PRO 164 251 251 PRO PRO A . n A 1 165 HIS 165 252 252 HIS HIS A . n A 1 166 ARG 166 253 253 ARG ARG A . n A 1 167 ARG 167 254 254 ARG ARG A . n A 1 168 ILE 168 255 255 ILE ILE A . n A 1 169 ASP 169 256 256 ASP ASP A . n A 1 170 ILE 170 257 257 ILE ILE A . n A 1 171 ARG 171 258 258 ARG ARG A . n A 1 172 LEU 172 259 259 LEU LEU A . n A 1 173 ILE 173 260 260 ILE ILE A . n A 1 174 PRO 174 261 261 PRO PRO A . n A 1 175 LYS 175 262 262 LYS LYS A . n A 1 176 ASP 176 263 263 ASP ASP A . n A 1 177 GLN 177 264 264 GLN GLN A . n A 1 178 TYR 178 265 265 TYR TYR A . n A 1 179 TYR 179 266 266 TYR TYR A . n A 1 180 CYS 180 267 267 CYS CYS A . n A 1 181 GLY 181 268 268 GLY GLY A . n A 1 182 VAL 182 269 269 VAL VAL A . n A 1 183 LEU 183 270 270 LEU LEU A . n A 1 184 TYR 184 271 271 TYR TYR A . n A 1 185 PHE 185 272 272 PHE PHE A . n A 1 186 THR 186 273 273 THR THR A . n A 1 187 GLY 187 274 274 GLY GLY A . n A 1 188 SER 188 275 275 SER SER A . n A 1 189 ASP 189 276 276 ASP ASP A . n A 1 190 ILE 190 277 277 ILE ILE A . n A 1 191 PHE 191 278 278 PHE PHE A . n A 1 192 ASN 192 279 279 ASN ASN A . n A 1 193 LYS 193 280 280 LYS LYS A . n A 1 194 ASN 194 281 281 ASN ASN A . n A 1 195 MET 195 282 282 MET MET A . n A 1 196 ARG 196 283 283 ARG ARG A . n A 1 197 ALA 197 284 284 ALA ALA A . n A 1 198 HIS 198 285 285 HIS HIS A . n A 1 199 ALA 199 286 286 ALA ALA A . n A 1 200 LEU 200 287 287 LEU LEU A . n A 1 201 GLU 201 288 288 GLU GLU A . n A 1 202 LYS 202 289 289 LYS LYS A . n A 1 203 GLY 203 290 290 GLY GLY A . n A 1 204 PHE 204 291 291 PHE PHE A . n A 1 205 THR 205 292 292 THR THR A . n A 1 206 ILE 206 293 293 ILE ILE A . n A 1 207 ASN 207 294 294 ASN ASN A . n A 1 208 GLU 208 295 295 GLU GLU A . n A 1 209 TYR 209 296 296 TYR TYR A . n A 1 210 THR 210 297 297 THR THR A . n A 1 211 ILE 211 298 298 ILE ILE A . n A 1 212 ARG 212 299 299 ARG ARG A . n A 1 213 PRO 213 300 300 PRO PRO A . n A 1 214 LEU 214 301 301 LEU LEU A . n A 1 215 GLY 215 302 302 GLY GLY A . n A 1 216 VAL 216 303 303 VAL VAL A . n A 1 217 THR 217 304 304 THR THR A . n A 1 218 GLY 218 305 305 GLY GLY A . n A 1 219 VAL 219 306 306 VAL VAL A . n A 1 220 ALA 220 307 307 ALA ALA A . n A 1 221 GLY 221 308 308 GLY GLY A . n A 1 222 GLU 222 309 309 GLU GLU A . n A 1 223 PRO 223 310 310 PRO PRO A . n A 1 224 LEU 224 311 311 LEU LEU A . n A 1 225 PRO 225 312 312 PRO PRO A . n A 1 226 VAL 226 313 313 VAL VAL A . n A 1 227 ASP 227 314 314 ASP ASP A . n A 1 228 SER 228 315 315 SER SER A . n A 1 229 GLU 229 316 316 GLU GLU A . n A 1 230 GLN 230 317 317 GLN GLN A . n A 1 231 ASP 231 318 318 ASP ASP A . n A 1 232 ILE 232 319 319 ILE ILE A . n A 1 233 PHE 233 320 320 PHE PHE A . n A 1 234 ASP 234 321 321 ASP ASP A . n A 1 235 TYR 235 322 322 TYR TYR A . n A 1 236 ILE 236 323 323 ILE ILE A . n A 1 237 GLN 237 324 324 GLN GLN A . n A 1 238 TRP 238 325 325 TRP TRP A . n A 1 239 ARG 239 326 326 ARG ARG A . n A 1 240 TYR 240 327 327 TYR TYR A . n A 1 241 ARG 241 328 328 ARG ARG A . n A 1 242 GLU 242 329 329 GLU GLU A . n A 1 243 PRO 243 330 330 PRO PRO A . n A 1 244 LYS 244 331 331 LYS LYS A . n A 1 245 ASP 245 332 332 ASP ASP A . n A 1 246 ARG 246 333 333 ARG ARG A . n A 1 247 SER 247 334 334 SER SER A . n A 1 248 GLU 248 335 335 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 401 401 HOH HOH A . B 2 HOH 2 402 402 HOH HOH A . B 2 HOH 3 403 403 HOH HOH A . B 2 HOH 4 404 404 HOH HOH A . B 2 HOH 5 405 405 HOH HOH A . B 2 HOH 6 406 406 HOH HOH A . B 2 HOH 7 407 407 HOH HOH A . B 2 HOH 8 408 408 HOH HOH A . B 2 HOH 9 409 409 HOH HOH A . B 2 HOH 10 410 410 HOH HOH A . B 2 HOH 11 411 411 HOH HOH A . B 2 HOH 12 412 412 HOH HOH A . B 2 HOH 13 413 413 HOH HOH A . B 2 HOH 14 414 414 HOH HOH A . B 2 HOH 15 415 415 HOH HOH A . B 2 HOH 16 416 416 HOH HOH A . B 2 HOH 17 417 417 HOH HOH A . B 2 HOH 18 418 418 HOH HOH A . B 2 HOH 19 419 419 HOH HOH A . B 2 HOH 20 420 420 HOH HOH A . B 2 HOH 21 421 421 HOH HOH A . B 2 HOH 22 422 422 HOH HOH A . B 2 HOH 23 423 423 HOH HOH A . B 2 HOH 24 424 424 HOH HOH A . B 2 HOH 25 425 425 HOH HOH A . B 2 HOH 26 426 426 HOH HOH A . B 2 HOH 27 427 427 HOH HOH A . B 2 HOH 28 428 428 HOH HOH A . B 2 HOH 29 429 429 HOH HOH A . B 2 HOH 30 430 430 HOH HOH A . B 2 HOH 31 433 433 HOH HOH A . B 2 HOH 32 434 434 HOH HOH A . B 2 HOH 33 435 435 HOH HOH A . B 2 HOH 34 436 436 HOH HOH A . B 2 HOH 35 437 437 HOH HOH A . B 2 HOH 36 438 438 HOH HOH A . B 2 HOH 37 439 439 HOH HOH A . B 2 HOH 38 440 440 HOH HOH A . B 2 HOH 39 441 441 HOH HOH A . B 2 HOH 40 442 442 HOH HOH A . B 2 HOH 41 443 443 HOH HOH A . B 2 HOH 42 444 444 HOH HOH A . B 2 HOH 43 445 445 HOH HOH A . B 2 HOH 44 447 447 HOH HOH A . B 2 HOH 45 448 448 HOH HOH A . B 2 HOH 46 449 449 HOH HOH A . B 2 HOH 47 450 450 HOH HOH A . B 2 HOH 48 451 451 HOH HOH A . B 2 HOH 49 454 454 HOH HOH A . B 2 HOH 50 455 455 HOH HOH A . B 2 HOH 51 456 456 HOH HOH A . B 2 HOH 52 457 457 HOH HOH A . B 2 HOH 53 458 458 HOH HOH A . B 2 HOH 54 459 459 HOH HOH A . B 2 HOH 55 460 460 HOH HOH A . B 2 HOH 56 461 461 HOH HOH A . B 2 HOH 57 462 462 HOH HOH A . B 2 HOH 58 463 463 HOH HOH A . B 2 HOH 59 464 464 HOH HOH A . B 2 HOH 60 465 465 HOH HOH A . B 2 HOH 61 466 466 HOH HOH A . B 2 HOH 62 467 467 HOH HOH A . B 2 HOH 63 468 468 HOH HOH A . B 2 HOH 64 469 469 HOH HOH A . B 2 HOH 65 470 470 HOH HOH A . B 2 HOH 66 471 471 HOH HOH A . B 2 HOH 67 472 472 HOH HOH A . B 2 HOH 68 473 473 HOH HOH A . B 2 HOH 69 474 474 HOH HOH A . B 2 HOH 70 476 476 HOH HOH A . B 2 HOH 71 477 477 HOH HOH A . B 2 HOH 72 478 478 HOH HOH A . B 2 HOH 73 479 479 HOH HOH A . B 2 HOH 74 481 481 HOH HOH A . B 2 HOH 75 482 482 HOH HOH A . B 2 HOH 76 483 483 HOH HOH A . B 2 HOH 77 484 484 HOH HOH A . B 2 HOH 78 485 485 HOH HOH A . B 2 HOH 79 486 486 HOH HOH A . B 2 HOH 80 487 487 HOH HOH A . B 2 HOH 81 488 488 HOH HOH A . B 2 HOH 82 489 489 HOH HOH A . B 2 HOH 83 490 490 HOH HOH A . B 2 HOH 84 491 491 HOH HOH A . B 2 HOH 85 492 492 HOH HOH A . B 2 HOH 86 494 494 HOH HOH A . B 2 HOH 87 496 496 HOH HOH A . B 2 HOH 88 497 497 HOH HOH A . B 2 HOH 89 498 498 HOH HOH A . B 2 HOH 90 499 499 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 91 ? CG ? A ASP 4 CG 2 1 Y 1 A ASP 91 ? OD1 ? A ASP 4 OD1 3 1 Y 1 A ASP 91 ? OD2 ? A ASP 4 OD2 4 1 Y 1 A ASP 92 ? CG ? A ASP 5 CG 5 1 Y 1 A ASP 92 ? OD1 ? A ASP 5 OD1 6 1 Y 1 A ASP 92 ? OD2 ? A ASP 5 OD2 7 1 Y 1 A SER 109 ? OG ? A SER 22 OG 8 1 Y 1 A ILE 119 ? CG1 ? A ILE 32 CG1 9 1 Y 1 A ILE 119 ? CG2 ? A ILE 32 CG2 10 1 Y 1 A ILE 119 ? CD1 ? A ILE 32 CD1 11 1 Y 1 A GLU 123 ? CG ? A GLU 36 CG 12 1 Y 1 A GLU 123 ? CD ? A GLU 36 CD 13 1 Y 1 A GLU 123 ? OE1 ? A GLU 36 OE1 14 1 Y 1 A GLU 123 ? OE2 ? A GLU 36 OE2 15 1 Y 1 A LYS 131 ? CG ? A LYS 44 CG 16 1 Y 1 A LYS 131 ? CD ? A LYS 44 CD 17 1 Y 1 A LYS 131 ? CE ? A LYS 44 CE 18 1 Y 1 A LYS 131 ? NZ ? A LYS 44 NZ 19 1 Y 1 A LYS 206 ? NZ ? A LYS 119 NZ 20 1 Y 1 A LYS 220 ? CD ? A LYS 133 CD 21 1 Y 1 A LYS 220 ? CE ? A LYS 133 CE 22 1 Y 1 A LYS 220 ? NZ ? A LYS 133 NZ 23 1 Y 1 A SER 243 ? OG ? A SER 156 OG 24 1 Y 1 A GLU 244 ? CG ? A GLU 157 CG 25 1 Y 1 A GLU 244 ? CD ? A GLU 157 CD 26 1 Y 1 A GLU 244 ? OE1 ? A GLU 157 OE1 27 1 Y 1 A GLU 244 ? OE2 ? A GLU 157 OE2 28 1 Y 1 A ASN 245 ? CG ? A ASN 158 CG 29 1 Y 1 A ASN 245 ? OD1 ? A ASN 158 OD1 30 1 Y 1 A ASN 245 ? ND2 ? A ASN 158 ND2 31 1 Y 1 A LYS 280 ? CG ? A LYS 193 CG 32 1 Y 1 A LYS 280 ? CD ? A LYS 193 CD 33 1 Y 1 A LYS 280 ? CE ? A LYS 193 CE 34 1 Y 1 A LYS 280 ? NZ ? A LYS 193 NZ 35 1 Y 1 A VAL 303 ? CG1 ? A VAL 216 CG1 36 1 Y 1 A VAL 303 ? CG2 ? A VAL 216 CG2 37 1 Y 1 A THR 304 ? OG1 ? A THR 217 OG1 38 1 Y 1 A THR 304 ? CG2 ? A THR 217 CG2 39 1 Y 1 A VAL 306 ? CG1 ? A VAL 219 CG1 40 1 Y 1 A VAL 306 ? CG2 ? A VAL 219 CG2 41 1 Y 1 A ARG 326 ? CG ? A ARG 239 CG 42 1 Y 1 A ARG 326 ? CD ? A ARG 239 CD 43 1 Y 1 A ARG 326 ? NE ? A ARG 239 NE 44 1 Y 1 A ARG 326 ? CZ ? A ARG 239 CZ 45 1 Y 1 A ARG 326 ? NH1 ? A ARG 239 NH1 46 1 Y 1 A ARG 326 ? NH2 ? A ARG 239 NH2 # _software.name TNT _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1BPB _cell.length_a 120.576 _cell.length_b 63.520 _cell.length_c 38.215 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BPB _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.entry_id 1BPB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.61 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1BPB _refine.ls_number_reflns_obs 13634 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1930000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1934 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 2024 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg 3.0 ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1BPB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1BPB _struct.title 'CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BPB _struct_keywords.pdbx_keywords NUCLEOTIDYLTRANSFERASE _struct_keywords.text NUCLEOTIDYLTRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DPOB_RAT _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P06766 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;SKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGK LRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDI VLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQL PSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFD YIQWRYREPKDRSE ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1BPB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 248 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P06766 _struct_ref_seq.db_align_beg 87 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 334 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 88 _struct_ref_seq.pdbx_auth_seq_align_end 335 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 6 ? THR A 14 ? THR A 93 THR A 101 1 ? 9 HELX_P HELX_P2 2 GLY A 20 ? VAL A 28 ? GLY A 107 VAL A 115 1 ? 9 HELX_P HELX_P3 3 THR A 34 ? ASN A 41 ? THR A 121 ASN A 128 1 ? 8 HELX_P HELX_P4 4 GLU A 42 ? LEU A 45 ? GLU A 129 LEU A 132 5 ? 4 HELX_P HELX_P5 5 ASN A 46 ? TYR A 55 ? ASN A 133 TYR A 142 1 ? 10 HELX_P HELX_P6 6 GLU A 57 ? LYS A 61 ? GLU A 144 LYS A 148 5 ? 5 HELX_P HELX_P7 7 ARG A 65 ? ASP A 83 ? ARG A 152 ASP A 170 1 ? 19 HELX_P HELX_P8 8 CYS A 91 ? ARG A 96 ? CYS A 178 ARG A 183 1 ? 6 HELX_P HELX_P9 9 GLN A 120 ? VAL A 134 ? GLN A 207 VAL A 221 1 ? 15 HELX_P HELX_P10 10 PRO A 174 ? ASP A 176 ? PRO A 261 ASP A 263 5 ? 3 HELX_P HELX_P11 11 GLN A 177 ? GLY A 187 ? GLN A 264 GLY A 274 1 ? 11 HELX_P HELX_P12 12 SER A 188 ? LYS A 202 ? SER A 275 LYS A 289 1 ? 15 HELX_P HELX_P13 13 SER A 228 ? ILE A 236 ? SER A 315 ILE A 323 1 ? 9 HELX_P HELX_P14 14 GLU A 242 ? ARG A 246 ? GLU A 329 ARG A 333 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 187 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 188 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 63 ? PRO A 64 ? ILE A 150 PRO A 151 A 2 SER A 100 ? SER A 101 ? SER A 187 SER A 188 B 1 ILE A 87 ? VAL A 90 ? ILE A 174 VAL A 177 B 2 MET A 104 ? THR A 109 ? MET A 191 THR A 196 B 3 ARG A 166 ? LEU A 172 ? ARG A 253 LEU A 259 B 4 LYS A 147 ? CYS A 152 ? LYS A 234 CYS A 239 B 5 ILE A 137 ? LYS A 143 ? ILE A 224 LYS A 230 C 1 PHE A 204 ? ILE A 206 ? PHE A 291 ILE A 293 C 2 ILE A 211 ? PRO A 213 ? ILE A 298 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 63 ? N ILE A 150 O SER A 101 ? O SER A 188 B 1 2 N THR A 89 ? N THR A 176 O LEU A 107 ? O LEU A 194 B 2 3 N MET A 104 ? N MET A 191 O ARG A 167 ? O ARG A 254 B 3 4 O ILE A 170 ? O ILE A 257 N PHE A 148 ? N PHE A 235 B 4 5 O VAL A 151 ? O VAL A 238 N THR A 138 ? N THR A 225 C 1 2 O THR A 205 ? O THR A 292 N ARG A 212 ? N ARG A 299 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 468 ? ? 1_555 O A HOH 468 ? ? 2_565 0.30 2 1 OG A SER 204 ? ? 1_555 CE A LYS 206 ? ? 2_555 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 154 ? ? OE1 A GLU 154 ? ? 1.324 1.252 0.072 0.011 N 2 1 CD A GLU 203 ? ? OE1 A GLU 203 ? ? 1.319 1.252 0.067 0.011 N 3 1 CD A GLU 216 ? ? OE1 A GLU 216 ? ? 1.324 1.252 0.072 0.011 N 4 1 CD A GLU 232 ? ? OE1 A GLU 232 ? ? 1.321 1.252 0.069 0.011 N 5 1 CD A GLU 309 ? ? OE1 A GLU 309 ? ? 1.322 1.252 0.070 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 102 ? ? CZ A ARG 102 ? ? NH2 A ARG 102 ? ? 117.20 120.30 -3.10 0.50 N 2 1 NE A ARG 112 ? ? CZ A ARG 112 ? ? NH1 A ARG 112 ? ? 125.13 120.30 4.83 0.50 N 3 1 NE A ARG 112 ? ? CZ A ARG 112 ? ? NH2 A ARG 112 ? ? 116.93 120.30 -3.37 0.50 N 4 1 O A LYS 120 ? ? C A LYS 120 ? ? N A THR 121 ? ? 105.37 122.70 -17.33 1.60 Y 5 1 CA A ARG 126 ? ? C A ARG 126 ? ? N A LYS 127 ? ? 99.24 117.20 -17.96 2.20 Y 6 1 O A ARG 126 ? ? C A ARG 126 ? ? N A LYS 127 ? ? 138.29 122.70 15.59 1.60 Y 7 1 C A ARG 126 ? ? N A LYS 127 ? ? CA A LYS 127 ? ? 93.55 121.70 -28.15 2.50 Y 8 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD1 A ASP 130 ? ? 112.51 118.30 -5.79 0.90 N 9 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH1 A ARG 137 ? ? 123.65 120.30 3.35 0.50 N 10 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH2 A ARG 137 ? ? 116.84 120.30 -3.46 0.50 N 11 1 CB A ASP 145 ? ? CG A ASP 145 ? ? OD1 A ASP 145 ? ? 112.56 118.30 -5.74 0.90 N 12 1 NE A ARG 149 ? ? CZ A ARG 149 ? ? NH2 A ARG 149 ? ? 123.42 120.30 3.12 0.50 N 13 1 CB A PRO 151 ? ? CA A PRO 151 ? ? C A PRO 151 ? ? 98.88 111.70 -12.82 2.10 N 14 1 N A ARG 152 ? ? CA A ARG 152 ? ? CB A ARG 152 ? ? 122.65 110.60 12.05 1.80 N 15 1 CA A VAL 166 ? ? CB A VAL 166 ? ? CG1 A VAL 166 ? ? 120.01 110.90 9.11 1.50 N 16 1 CB A ASP 170 ? ? CG A ASP 170 ? ? OD1 A ASP 170 ? ? 112.05 118.30 -6.25 0.90 N 17 1 NE A ARG 182 ? ? CZ A ARG 182 ? ? NH1 A ARG 182 ? ? 124.72 120.30 4.42 0.50 N 18 1 NE A ARG 182 ? ? CZ A ARG 182 ? ? NH2 A ARG 182 ? ? 117.04 120.30 -3.26 0.50 N 19 1 NE A ARG 183 ? ? CZ A ARG 183 ? ? NH1 A ARG 183 ? ? 123.46 120.30 3.16 0.50 N 20 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD1 A ASP 190 ? ? 125.89 118.30 7.59 0.90 N 21 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD2 A ASP 190 ? ? 110.67 118.30 -7.63 0.90 N 22 1 CB A ASP 192 ? ? CG A ASP 192 ? ? OD1 A ASP 192 ? ? 111.11 118.30 -7.19 0.90 N 23 1 CB A ASP 192 ? ? CG A ASP 192 ? ? OD2 A ASP 192 ? ? 123.77 118.30 5.47 0.90 N 24 1 NE A ARG 213 ? ? CZ A ARG 213 ? ? NH1 A ARG 213 ? ? 123.58 120.30 3.28 0.50 N 25 1 NE A ARG 253 ? ? CZ A ARG 253 ? ? NH1 A ARG 253 ? ? 127.08 120.30 6.78 0.50 N 26 1 NE A ARG 253 ? ? CZ A ARG 253 ? ? NH2 A ARG 253 ? ? 114.63 120.30 -5.67 0.50 N 27 1 CB A TYR 266 ? ? CG A TYR 266 ? ? CD1 A TYR 266 ? ? 116.90 121.00 -4.10 0.60 N 28 1 CB A ASP 276 ? ? CG A ASP 276 ? ? OD1 A ASP 276 ? ? 111.93 118.30 -6.37 0.90 N 29 1 NE A ARG 283 ? ? CZ A ARG 283 ? ? NH1 A ARG 283 ? ? 124.04 120.30 3.74 0.50 N 30 1 CD A ARG 299 ? A NE A ARG 299 ? A CZ A ARG 299 ? A 132.44 123.60 8.84 1.40 N 31 1 NE A ARG 299 ? A CZ A ARG 299 ? A NH1 A ARG 299 ? A 125.12 120.30 4.82 0.50 N 32 1 NE A ARG 299 ? A CZ A ARG 299 ? A NH2 A ARG 299 ? A 116.98 120.30 -3.32 0.50 N 33 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD1 A ASP 314 ? ? 110.02 118.30 -8.28 0.90 N 34 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD2 A ASP 314 ? ? 124.14 118.30 5.84 0.90 N 35 1 CB A ASP 321 ? ? CG A ASP 321 ? ? OD1 A ASP 321 ? ? 111.12 118.30 -7.18 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 101 ? ? -54.91 -7.08 2 1 PRO A 108 ? ? -59.01 -70.99 3 1 LYS A 120 ? ? -116.83 -90.86 4 1 THR A 121 ? ? -28.00 166.58 5 1 ASN A 128 ? ? -95.14 49.87 6 1 GLU A 144 ? ? -53.19 -73.33 7 1 ASP A 145 ? ? -36.39 -35.47 8 1 ASP A 170 ? ? 176.31 106.10 9 1 CYS A 178 ? ? -88.08 -145.52 10 1 SER A 204 ? ? -48.35 -72.30 11 1 SER A 205 ? ? 42.29 85.68 12 1 LYS A 206 ? ? 163.65 41.43 13 1 ARG A 222 ? ? 80.29 32.44 14 1 GLU A 244 ? ? -141.40 -1.17 15 1 THR A 304 ? ? 83.65 -15.80 16 1 VAL A 306 ? ? -36.29 75.40 17 1 GLU A 309 ? ? 125.22 94.30 18 1 GLN A 324 ? ? 42.17 78.92 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id GLU _pdbx_validate_chiral.auth_seq_id 249 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 LYS A 120 ? ? 15.07 2 1 THR A 297 ? ? -15.43 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 441 ? B HOH . 2 1 A HOH 477 ? B HOH . # _pdbx_entry_details.entry_id 1BPB _pdbx_entry_details.compound_details ;DNA POLYMERASE BETA POSSESSES A PROTEOLYTICALLY SENSITIVE REGION IN ITS AMINO ACID SEQUENCE (RESIDUES 80 - 90), AND THE PRECISE CLEAVAGE SITE VARIES DEPENDING ON THE PROTEASE OR THE CHEMICAL REAGENT USED IN THE CLEAVAGE REACTION (SEE A. KUMAR ET AL., J. BIOL. CHEM. 265, 2124 (1990)). THE AUTHORS SUSPECT THAT A BACTERIAL PROTEASE OF UNKNOWN ORIGIN UNEXPECTEDLY CLEAVED THEIR INTACT ENZYME DURING THE CRYSTALLIZATION PROCESS, RESULTING IN CRYSTALS OF THE PROTEIN STRUCTURE REPORTED IN THIS ENTRY - THE 31-KD COOH-TERMINAL DOMAIN (RESIDUES 88 - 335) OF DNA POLYMERASE BETA. BECAUSE THE AUTHORS HAVE NOT DONE AN N-TERMINAL ANALYSIS ON THE PROTEIN IN THEIR CRYSTALS, THEIR CHOICE OF THE CLEAVAGE SITE (BETWEEN RESIDUES 87 AND 88) IS RATHER ARBITRARY, AND IN FACT, THERE MAY EVEN BE VARIABLE N-TERMINAL RESIDUES WITHIN ANY GIVEN CRYSTAL OF THIS CLEAVED PROTEIN. PLEASE NOTE THAT THIS ENTRY IS ONLY THE 31 KD DOMAIN AND THE FIRST 8 KD DOMAIN IS NOT PRESENT IN THIS STRUCTURE. PDB ADVISORY NOTICE: WATER MOLECULES 441, 468, AND 477 ARE VERY CLOSE TO SPECIAL POSITIONS. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE ADVISORY NOTICE DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: DPOB_RAT SWISS-PROT RESIDUE PDB SEQRES NAME NUMBER NAME CHAIN SEQ/INSERT CODE ARG 227 LEU 228 THE PAPER BY KUMAR, ET AL., J.BIOL.CHEM., 265, 2124, (1990) REPORTS A CORRECTION TO THE SEQUENCE GIVEN IN SWISS-PROT (SEE REFERENCE 3 ABOVE). ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 88 ? A ILE 1 2 1 Y 1 A ARG 89 ? A ARG 2 3 1 Y 1 A GLN 90 ? A GLN 3 4 1 Y 1 A ASP 246 ? A ASP 159 5 1 Y 1 A GLU 247 ? A GLU 160 6 1 Y 1 A ASN 248 ? A ASN 161 7 1 N 0 A HOH 499 ? B HOH ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 1BPB _atom_sites.fract_transf_matrix[1][1] 0.008294 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015743 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026168 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'GLY 274 - SER 275 OMEGA =359.35 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION' # loop_ _atom_type.symbol C N O S # loop_