HEADER TRANSFERASE 11-AUG-98 1BPJ TITLE THYMIDYLATE SYNTHASE R178T, R179T DOUBLE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (THYMIDYLATE SYNTHASE); COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.45; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI; SOURCE 3 ORGANISM_TAXID: 1582; SOURCE 4 STRAIN: E. COLI CHI-2913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: CHI-2913; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKPTSD; SOURCE 9 OTHER_DETAILS: SYNTHETIC GENE KEYWDS TRANSFERASE (METHYLTRANSFERASE), TRANSFERASE, METHYLTRANSFERASE, KEYWDS 2 NUCLEOTIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR R.J.MORSE,J.S.FINER-MOORE,R.M.STROUD REVDAT 9 09-AUG-23 1BPJ 1 REMARK REVDAT 8 03-NOV-21 1BPJ 1 REMARK SEQADV LINK REVDAT 7 13-JUL-11 1BPJ 1 VERSN REVDAT 6 24-FEB-09 1BPJ 1 VERSN REVDAT 5 01-APR-03 1BPJ 1 JRNL REVDAT 4 01-MAY-00 1BPJ 1 DBREF SEQADV REVDAT 3 04-FEB-00 1BPJ 1 JRNL REVDAT 2 29-DEC-99 1BPJ 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 19-AUG-98 1BPJ 0 JRNL AUTH R.J.MORSE,S.KAWASE,D.V.SANTI,J.FINER-MOORE,R.M.STROUD JRNL TITL ENERGETIC CONTRIBUTIONS OF FOUR ARGININES TO JRNL TITL 2 PHOSPHATE-BINDING IN THYMIDYLATE SYNTHASE ARE MORE THAN JRNL TITL 3 ADDITIVE AND DEPEND ON OPTIMIZATION OF "EFFECTIVE CHARGE JRNL TITL 4 BALANCE". JRNL REF BIOCHEMISTRY V. 39 1011 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10653645 JRNL DOI 10.1021/BI9918590 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.M.STROUD,J.S.FINER-MOORE REMARK 1 TITL STEREOCHEMISTRY OF A MULTISTEP(SLASH)BIPARTITE METHYL REMARK 1 TITL 2 TRANSFER REACTION: THYMIDYLATE SYNTHASE REMARK 1 REF FASEB J. V. 7 671 1993 REMARK 1 REFN ISSN 0892-6638 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.S.FINER-MOORE,E.B.FAUMAN,P.G.FOSTER,K.M.PERRY,D.V.SANTI, REMARK 1 AUTH 2 R.M.STROUD REMARK 1 TITL REFINED STRUCTURES OF SUBSTRATE-BOUND AND PHOSPHATE-BOUND REMARK 1 TITL 2 THYMIDYLATE SYNTHASE FROM LACTOBACILLUS CASEI REMARK 1 REF J.MOL.BIOL. V. 232 1101 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.W.HARDY,J.S.FINER-MOORE,W.R.MONTFORT,M.O.JONES,D.V.SANTI, REMARK 1 AUTH 2 R.M.STROUD REMARK 1 TITL ATOMIC STRUCTURE OF THYMIDYLATE SYNTHASE: TARGET FOR REMARK 1 TITL 2 RATIONAL DRUG DESIGN REMARK 1 REF SCIENCE V. 235 448 1987 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 71.6 REMARK 3 NUMBER OF REFLECTIONS : 12546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 850 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 80 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.67 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.940 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.720 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.030 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.660 ; 2.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM11.WAT REMARK 3 PARAMETER FILE 3 : PARAMED.LIG REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH11.WAT REMARK 3 TOPOLOGY FILE 3 : TOPO.DUMP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-95 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE MONOCHROMETER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 8.90000 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : 70.0000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1TDM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 162.53333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.90000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 203.16667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.63333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.26667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 162.53333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 203.16667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 121.90000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.63333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 78.80000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -81.26667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -121.90000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 317 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 25 27.04 46.95 REMARK 500 LYS A 50 125.52 178.79 REMARK 500 PRO A 53 98.21 -61.71 REMARK 500 MET A 101 45.20 -104.72 REMARK 500 LEU A 144 60.17 -101.91 REMARK 500 ALA A 152 47.60 -151.13 REMARK 500 ASP A 159 -155.20 -98.73 REMARK 500 VAL A 190 -53.65 -28.90 REMARK 500 MET A 296 -65.41 -28.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 LIES ON A CRYSTALLOGRAPHIC 2-FOLD REMARK 600 REMARK 600 POT 35 IS A POSSIBLE POTASSIUM ION THAT LIES ON A MOLECULAR REMARK 600 AND CRYSTALLOGRAPHIC TWO-FOLD AXIS. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 317 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 183 OG REMARK 620 2 SER A 183 OG 116.3 REMARK 620 3 TRP A 185 O 82.0 117.0 REMARK 620 4 TRP A 185 O 116.5 82.1 145.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC CYSTEINE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 318 DBREF 1BPJ A 1 316 UNP P00469 TYSY_LACCA 1 316 SEQADV 1BPJ THR A 178 UNP P00469 ARG 178 ENGINEERED MUTATION SEQADV 1BPJ THR A 179 UNP P00469 ARG 179 ENGINEERED MUTATION SEQRES 1 A 316 MET LEU GLU GLN PRO TYR LEU ASP LEU ALA LYS LYS VAL SEQRES 2 A 316 LEU ASP GLU GLY HIS PHE LYS PRO ASP ARG THR HIS THR SEQRES 3 A 316 GLY THR TYR SER ILE PHE GLY HIS GLN MET ARG PHE ASP SEQRES 4 A 316 LEU SER LYS GLY PHE PRO LEU LEU THR THR LYS LYS VAL SEQRES 5 A 316 PRO PHE GLY LEU ILE LYS SER GLU LEU LEU TRP PHE LEU SEQRES 6 A 316 HIS GLY ASP THR ASN ILE ARG PHE LEU LEU GLN HIS ARG SEQRES 7 A 316 ASN HIS ILE TRP ASP GLU TRP ALA PHE GLU LYS TRP VAL SEQRES 8 A 316 LYS SER ASP GLU TYR HIS GLY PRO ASP MET THR ASP PHE SEQRES 9 A 316 GLY HIS ARG SER GLN LYS ASP PRO GLU PHE ALA ALA VAL SEQRES 10 A 316 TYR HIS GLU GLU MET ALA LYS PHE ASP ASP ARG VAL LEU SEQRES 11 A 316 HIS ASP ASP ALA PHE ALA ALA LYS TYR GLY ASP LEU GLY SEQRES 12 A 316 LEU VAL TYR GLY SER GLN TRP ARG ALA TRP HIS THR SER SEQRES 13 A 316 LYS GLY ASP THR ILE ASP GLN LEU GLY ASP VAL ILE GLU SEQRES 14 A 316 GLN ILE LYS THR HIS PRO TYR SER THR THR LEU ILE VAL SEQRES 15 A 316 SER ALA TRP ASN PRO GLU ASP VAL PRO THR MET ALA LEU SEQRES 16 A 316 PRO PRO CYS HIS THR LEU TYR GLN PHE TYR VAL ASN ASP SEQRES 17 A 316 GLY LYS LEU SER LEU GLN LEU TYR GLN ARG SER ALA ASP SEQRES 18 A 316 ILE PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 19 A 316 LEU LEU THR HIS LEU VAL ALA HIS GLU CYS GLY LEU GLU SEQRES 20 A 316 VAL GLY GLU PHE ILE HIS THR PHE GLY ASP ALA HIS LEU SEQRES 21 A 316 TYR VAL ASN HIS LEU ASP GLN ILE LYS GLU GLN LEU SER SEQRES 22 A 316 ARG THR PRO ARG PRO ALA PRO THR LEU GLN LEU ASN PRO SEQRES 23 A 316 ASP LYS HIS ASP ILE PHE ASP PHE ASP MET LYS ASP ILE SEQRES 24 A 316 LYS LEU LEU ASN TYR ASP PRO TYR PRO ALA ILE LYS ALA SEQRES 25 A 316 PRO VAL ALA VAL HET K A 317 1 HET UMP A 318 20 HETNAM K POTASSIUM ION HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETSYN UMP DUMP FORMUL 2 K K 1+ FORMUL 3 UMP C9 H13 N2 O8 P FORMUL 4 HOH *58(H2 O) HELIX 1 1 LEU A 2 GLU A 16 5 15 HELIX 2 2 PHE A 54 LEU A 65 1 12 HELIX 3 3 ILE A 71 HIS A 77 5 7 HELIX 4 4 ASP A 83 VAL A 91 1 9 HELIX 5 5 PHE A 104 LYS A 110 1 7 HELIX 6 6 PHE A 114 HIS A 131 1 18 HELIX 7 7 ASP A 133 TYR A 139 1 7 HELIX 8 8 TYR A 146 ARG A 151 1 6 HELIX 9 9 GLN A 163 THR A 173 1 11 HELIX 10 10 PRO A 187 THR A 192 1 6 HELIX 11 11 VAL A 226 CYS A 244 1 19 HELIX 12 12 VAL A 262 SER A 273 5 12 HELIX 13 13 ILE A 291 ASP A 293 5 3 HELIX 14 14 MET A 296 ASP A 298 5 3 SHEET 1 A 4 HIS A 18 LYS A 20 0 SHEET 2 A 4 THR A 28 PHE A 32 -1 N SER A 30 O HIS A 18 SHEET 3 A 4 ASP A 257 TYR A 261 -1 N LEU A 260 O TYR A 29 SHEET 4 A 4 SER A 219 ASP A 221 1 N ALA A 220 O ASP A 257 SHEET 1 B 5 HIS A 34 ASP A 39 0 SHEET 2 B 5 GLU A 250 PHE A 255 -1 N PHE A 255 O HIS A 34 SHEET 3 B 5 LYS A 210 GLN A 217 1 N LEU A 213 O ILE A 252 SHEET 4 B 5 HIS A 199 ASN A 207 -1 N ASN A 207 O LYS A 210 SHEET 5 B 5 ILE A 181 SER A 183 -1 N VAL A 182 O TYR A 202 SHEET 1 C 2 THR A 281 LEU A 284 0 SHEET 2 C 2 ILE A 299 LEU A 302 -1 N LEU A 302 O THR A 281 LINK OG SER A 183 K K A 317 1555 1555 2.87 LINK OG SER A 183 K K A 317 11554 1555 2.86 LINK O TRP A 185 K K A 317 1555 1555 2.36 LINK O TRP A 185 K K A 317 11554 1555 2.37 SITE 1 CAT 1 CYS A 198 SITE 1 AC1 2 SER A 183 TRP A 185 SITE 1 AC2 16 ARG A 23 THR A 178 LEU A 195 GLN A 217 SITE 2 AC2 16 ARG A 218 SER A 219 ALA A 220 ASP A 221 SITE 3 AC2 16 ASN A 229 HIS A 259 TYR A 261 HOH A 337 SITE 4 AC2 16 HOH A 362 HOH A 367 HOH A 368 HOH A 370 CRYST1 78.800 78.800 243.800 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012690 0.007327 0.000000 0.00000 SCALE2 0.000000 0.014653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004102 0.00000 TER 2586 VAL A 316 HETATM 2587 K K A 317 0.004 59.245 -60.955 0.50 19.84 K HETATM 2588 N1 UMP A 318 14.727 48.839 -53.909 0.90 60.71 N HETATM 2589 C2 UMP A 318 13.691 47.898 -53.702 0.90 59.06 C HETATM 2590 N3 UMP A 318 13.044 48.009 -52.470 0.90 59.80 N HETATM 2591 C4 UMP A 318 13.349 48.956 -51.478 0.90 61.34 C HETATM 2592 C5 UMP A 318 14.428 49.855 -51.805 0.90 61.24 C HETATM 2593 C6 UMP A 318 15.070 49.744 -53.029 0.90 59.49 C HETATM 2594 O2 UMP A 318 13.349 47.018 -54.491 0.90 53.98 O HETATM 2595 O4 UMP A 318 12.739 49.042 -50.411 0.90 58.82 O HETATM 2596 C1' UMP A 318 15.635 48.893 -55.070 0.90 61.60 C HETATM 2597 C2' UMP A 318 15.080 48.756 -56.488 0.90 59.74 C HETATM 2598 C3' UMP A 318 16.358 48.942 -57.287 0.90 60.79 C HETATM 2599 C4' UMP A 318 17.059 50.167 -56.695 0.90 64.02 C HETATM 2600 O3' UMP A 318 17.182 47.803 -56.997 0.90 59.73 O HETATM 2601 O4' UMP A 318 16.511 50.098 -55.299 0.90 60.63 O HETATM 2602 C5' UMP A 318 16.570 51.456 -57.356 0.90 67.81 C HETATM 2603 O5' UMP A 318 16.987 51.514 -58.765 0.90 75.05 O HETATM 2604 P UMP A 318 16.032 50.929 -59.955 1.00 79.78 P HETATM 2605 OP1 UMP A 318 16.089 51.845 -61.116 1.00 79.88 O HETATM 2606 OP2 UMP A 318 16.462 49.566 -60.412 1.00 75.75 O HETATM 2607 OP3 UMP A 318 14.631 50.889 -59.477 1.00 81.03 O HETATM 2608 O HOH A 319 -13.866 48.419 -52.821 1.00 21.69 O HETATM 2609 O HOH A 320 -10.813 50.150 -54.903 1.00 4.86 O HETATM 2610 O HOH A 321 -1.264 66.768 -60.182 1.00 11.75 O HETATM 2611 O HOH A 322 4.970 64.108 -55.898 1.00 10.35 O HETATM 2612 O HOH A 323 4.896 67.863 -56.086 1.00 30.22 O HETATM 2613 O HOH A 324 6.577 61.315 -58.452 1.00 2.00 O HETATM 2614 O HOH A 325 9.165 58.838 -53.097 1.00 7.71 O HETATM 2615 O HOH A 326 3.877 54.274 -52.071 1.00 18.98 O HETATM 2616 O HOH A 327 7.392 52.356 -49.225 1.00 19.96 O HETATM 2617 O HOH A 328 13.030 42.152 -35.826 1.00 41.68 O HETATM 2618 O HOH A 329 22.257 37.317 -36.712 1.00 12.44 O HETATM 2619 O HOH A 330 18.476 29.848 -35.685 1.00 14.76 O HETATM 2620 O HOH A 331 12.319 24.880 -38.918 1.00 17.10 O HETATM 2621 O HOH A 332 16.630 23.098 -42.475 1.00 57.19 O HETATM 2622 O HOH A 333 21.032 25.441 -43.528 1.00 20.10 O HETATM 2623 O HOH A 334 13.162 23.578 -46.621 1.00 9.92 O HETATM 2624 O HOH A 335 20.420 26.402 -52.192 1.00 32.44 O HETATM 2625 O HOH A 336 19.390 41.224 -54.748 1.00 44.43 O HETATM 2626 O HOH A 337 17.170 51.947 -64.011 1.00 11.96 O HETATM 2627 O HOH A 338 -4.035 32.597 -50.045 1.00 5.60 O HETATM 2628 O HOH A 339 -8.087 39.677 -52.063 1.00 8.04 O HETATM 2629 O HOH A 340 -5.435 58.770 -55.677 1.00 10.47 O HETATM 2630 O HOH A 341 -9.959 58.266 -55.286 1.00 34.65 O HETATM 2631 O HOH A 342 -17.127 60.521 -47.251 1.00 18.84 O HETATM 2632 O HOH A 343 -9.096 60.499 -42.492 1.00 19.55 O HETATM 2633 O HOH A 344 8.485 60.585 -46.056 1.00 34.92 O HETATM 2634 O HOH A 345 -15.820 50.655 -43.565 1.00 40.43 O HETATM 2635 O HOH A 346 -8.385 38.170 -40.619 1.00 36.91 O HETATM 2636 O HOH A 347 5.870 32.253 -33.857 1.00 12.48 O HETATM 2637 O HOH A 348 8.462 33.522 -35.998 1.00 29.98 O HETATM 2638 O HOH A 349 6.341 34.151 -42.736 1.00 30.16 O HETATM 2639 O HOH A 350 5.460 30.670 -41.830 1.00 10.89 O HETATM 2640 O HOH A 351 9.524 40.337 -44.611 1.00 19.88 O HETATM 2641 O HOH A 352 21.939 55.597 -34.754 1.00 45.71 O HETATM 2642 O HOH A 353 31.272 74.179 -51.116 1.00 26.86 O HETATM 2643 O HOH A 354 31.212 73.061 -43.784 1.00 38.46 O HETATM 2644 O HOH A 355 26.017 75.970 -36.801 1.00 39.80 O HETATM 2645 O HOH A 356 -1.969 68.335 -46.041 1.00 22.45 O HETATM 2646 O HOH A 357 -8.096 54.506 -22.394 1.00 52.21 O HETATM 2647 O HOH A 358 9.807 49.186 -47.361 1.00 16.47 O HETATM 2648 O HOH A 359 24.418 38.828 -38.090 1.00 38.63 O HETATM 2649 O HOH A 360 21.352 46.592 -53.169 1.00 32.61 O HETATM 2650 O HOH A 361 16.656 38.034 -48.168 1.00 28.72 O HETATM 2651 O HOH A 362 16.793 48.011 -51.091 1.00 58.61 O HETATM 2652 O HOH A 363 8.255 50.890 -43.675 1.00 34.10 O HETATM 2653 O HOH A 364 11.423 52.346 -48.655 1.00 48.00 O HETATM 2654 O HOH A 365 12.109 53.523 -53.497 1.00 47.79 O HETATM 2655 O HOH A 366 19.401 57.076 -57.825 1.00 42.75 O HETATM 2656 O HOH A 367 18.360 49.233 -62.297 1.00 61.43 O HETATM 2657 O HOH A 368 16.239 52.464 -52.539 1.00 36.98 O HETATM 2658 O HOH A 369 12.830 50.990 -46.626 1.00 45.28 O HETATM 2659 O HOH A 370 14.880 50.109 -48.467 1.00 71.83 O HETATM 2660 O HOH A 371 20.842 49.364 -54.511 1.00 65.21 O HETATM 2661 O HOH A 372 6.448 70.264 -56.180 1.00 78.63 O HETATM 2662 O HOH A 373 4.515 67.049 -52.484 1.00 58.18 O HETATM 2663 O HOH A 374 -2.241 64.212 -39.116 1.00 45.64 O HETATM 2664 O HOH A 375 0.672 60.187 -30.065 1.00 52.32 O HETATM 2665 O HOH A 376 -0.712 39.286 -40.227 1.00 32.01 O CONECT 1516 2587 CONECT 1525 2587 CONECT 2587 1516 1525 CONECT 2588 2589 2593 2596 CONECT 2589 2588 2590 2594 CONECT 2590 2589 2591 CONECT 2591 2590 2592 2595 CONECT 2592 2591 2593 CONECT 2593 2588 2592 CONECT 2594 2589 CONECT 2595 2591 CONECT 2596 2588 2597 2601 CONECT 2597 2596 2598 CONECT 2598 2597 2599 2600 CONECT 2599 2598 2601 2602 CONECT 2600 2598 CONECT 2601 2596 2599 CONECT 2602 2599 2603 CONECT 2603 2602 2604 CONECT 2604 2603 2605 2606 2607 CONECT 2605 2604 CONECT 2606 2604 CONECT 2607 2604 MASTER 341 0 2 14 11 0 6 6 2664 1 23 25 END