data_1BPX # _entry.id 1BPX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BPX pdb_00001bpx 10.2210/pdb1bpx/pdb RCSB PDE0126 ? ? WWPDB D_1000171991 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1BPY . unspecified PDB 1BPZ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BPX _pdbx_database_status.recvd_initial_deposition_date 1997-04-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sawaya, M.R.' 1 'Prasad, R.' 2 'Wilson, S.H.' 3 'Kraut, J.' 4 'Pelletier, H.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism.' Biochemistry 36 11205 11215 1997 BICHAW US 0006-2960 0033 ? 9287163 10.1021/bi9703812 1 'Characterization of the Metal Ion Binding Helix-Hairpin-Helix Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis' Biochemistry 35 12778 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 2 'A Structural Basis for Metal Ion Mutagenicity and Nucleotide Selectivity in Human DNA Polymerase Beta' Biochemistry 35 12762 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 3 ;Crystal Structures of Human DNA Polymerase Beta Complexed with DNA: Implications for Catalytic Mechanism, Processivity, and Fidelity ; Biochemistry 35 12742 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 4 'Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism' Science 264 1930 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? 5 'Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP' Science 264 1891 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawaya, M.R.' 1 ? primary 'Prasad, R.' 2 ? primary 'Wilson, S.H.' 3 ? primary 'Kraut, J.' 4 ? primary 'Pelletier, H.' 5 ? 1 'Pelletier, H.' 6 ? 1 'Sawaya, M.R.' 7 ? 2 'Pelletier, H.' 8 ? 2 'Sawaya, M.R.' 9 ? 2 'Wolfle, W.' 10 ? 2 'Wilson, S.H.' 11 ? 2 'Kraut, J.' 12 ? 3 'Pelletier, H.' 13 ? 3 'Sawaya, M.R.' 14 ? 3 'Wolfle, W.' 15 ? 3 'Wilson, S.H.' 16 ? 3 'Kraut, J.' 17 ? 4 'Sawaya, M.R.' 18 ? 4 'Pelletier, H.' 19 ? 4 'Kumar, A.' 20 ? 4 'Wilson, S.H.' 21 ? 4 'Kraut, J.' 22 ? 5 'Pelletier, H.' 23 ? 5 'Sawaya, M.R.' 24 ? 5 'Kumar, A.' 25 ? 5 'Wilson, S.H.' 26 ? 5 'Kraut, J.' 27 ? # _cell.entry_id 1BPX _cell.length_a 52.767 _cell.length_b 79.395 _cell.length_c 54.622 _cell.angle_alpha 90.00 _cell.angle_beta 106.35 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BPX _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') ; 4869.157 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3') ; 3061.004 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*CP*GP*G)-3') ; 1536.035 1 ? ? ? ? 4 polymer man 'PROTEIN (DNA POLYMERASE BETA)' 38241.672 1 2.7.7.7 ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 6 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 4 _entity_name_com.name 'POL-BETA, BETA-POL' # _entity_name_sys.entity_id 4 _entity_name_sys.name 'EC 2.7.7.7' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DA)(DC)(DG)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)' CCGACGGCGCATCAGC T ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DC)' GCTGATGCGC P ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DG)' GTCGG D ? 4 'polypeptide(L)' no no ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DC n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n 2 1 DG n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DG n 2 10 DC n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DG n 3 5 DG n 4 1 MET n 4 2 SER n 4 3 LYS n 4 4 ARG n 4 5 LYS n 4 6 ALA n 4 7 PRO n 4 8 GLN n 4 9 GLU n 4 10 THR n 4 11 LEU n 4 12 ASN n 4 13 GLY n 4 14 GLY n 4 15 ILE n 4 16 THR n 4 17 ASP n 4 18 MET n 4 19 LEU n 4 20 THR n 4 21 GLU n 4 22 LEU n 4 23 ALA n 4 24 ASN n 4 25 PHE n 4 26 GLU n 4 27 LYS n 4 28 ASN n 4 29 VAL n 4 30 SER n 4 31 GLN n 4 32 ALA n 4 33 ILE n 4 34 HIS n 4 35 LYS n 4 36 TYR n 4 37 ASN n 4 38 ALA n 4 39 TYR n 4 40 ARG n 4 41 LYS n 4 42 ALA n 4 43 ALA n 4 44 SER n 4 45 VAL n 4 46 ILE n 4 47 ALA n 4 48 LYS n 4 49 TYR n 4 50 PRO n 4 51 HIS n 4 52 LYS n 4 53 ILE n 4 54 LYS n 4 55 SER n 4 56 GLY n 4 57 ALA n 4 58 GLU n 4 59 ALA n 4 60 LYS n 4 61 LYS n 4 62 LEU n 4 63 PRO n 4 64 GLY n 4 65 VAL n 4 66 GLY n 4 67 THR n 4 68 LYS n 4 69 ILE n 4 70 ALA n 4 71 GLU n 4 72 LYS n 4 73 ILE n 4 74 ASP n 4 75 GLU n 4 76 PHE n 4 77 LEU n 4 78 ALA n 4 79 THR n 4 80 GLY n 4 81 LYS n 4 82 LEU n 4 83 ARG n 4 84 LYS n 4 85 LEU n 4 86 GLU n 4 87 LYS n 4 88 ILE n 4 89 ARG n 4 90 GLN n 4 91 ASP n 4 92 ASP n 4 93 THR n 4 94 SER n 4 95 SER n 4 96 SER n 4 97 ILE n 4 98 ASN n 4 99 PHE n 4 100 LEU n 4 101 THR n 4 102 ARG n 4 103 VAL n 4 104 SER n 4 105 GLY n 4 106 ILE n 4 107 GLY n 4 108 PRO n 4 109 SER n 4 110 ALA n 4 111 ALA n 4 112 ARG n 4 113 LYS n 4 114 PHE n 4 115 VAL n 4 116 ASP n 4 117 GLU n 4 118 GLY n 4 119 ILE n 4 120 LYS n 4 121 THR n 4 122 LEU n 4 123 GLU n 4 124 ASP n 4 125 LEU n 4 126 ARG n 4 127 LYS n 4 128 ASN n 4 129 GLU n 4 130 ASP n 4 131 LYS n 4 132 LEU n 4 133 ASN n 4 134 HIS n 4 135 HIS n 4 136 GLN n 4 137 ARG n 4 138 ILE n 4 139 GLY n 4 140 LEU n 4 141 LYS n 4 142 TYR n 4 143 PHE n 4 144 GLY n 4 145 ASP n 4 146 PHE n 4 147 GLU n 4 148 LYS n 4 149 ARG n 4 150 ILE n 4 151 PRO n 4 152 ARG n 4 153 GLU n 4 154 GLU n 4 155 MET n 4 156 LEU n 4 157 GLN n 4 158 MET n 4 159 GLN n 4 160 ASP n 4 161 ILE n 4 162 VAL n 4 163 LEU n 4 164 ASN n 4 165 GLU n 4 166 VAL n 4 167 LYS n 4 168 LYS n 4 169 VAL n 4 170 ASP n 4 171 SER n 4 172 GLU n 4 173 TYR n 4 174 ILE n 4 175 ALA n 4 176 THR n 4 177 VAL n 4 178 CYS n 4 179 GLY n 4 180 SER n 4 181 PHE n 4 182 ARG n 4 183 ARG n 4 184 GLY n 4 185 ALA n 4 186 GLU n 4 187 SER n 4 188 SER n 4 189 GLY n 4 190 ASP n 4 191 MET n 4 192 ASP n 4 193 VAL n 4 194 LEU n 4 195 LEU n 4 196 THR n 4 197 HIS n 4 198 PRO n 4 199 SER n 4 200 PHE n 4 201 THR n 4 202 SER n 4 203 GLU n 4 204 SER n 4 205 THR n 4 206 LYS n 4 207 GLN n 4 208 PRO n 4 209 LYS n 4 210 LEU n 4 211 LEU n 4 212 HIS n 4 213 GLN n 4 214 VAL n 4 215 VAL n 4 216 GLU n 4 217 GLN n 4 218 LEU n 4 219 GLN n 4 220 LYS n 4 221 VAL n 4 222 HIS n 4 223 PHE n 4 224 ILE n 4 225 THR n 4 226 ASP n 4 227 THR n 4 228 LEU n 4 229 SER n 4 230 LYS n 4 231 GLY n 4 232 GLU n 4 233 THR n 4 234 LYS n 4 235 PHE n 4 236 MET n 4 237 GLY n 4 238 VAL n 4 239 CYS n 4 240 GLN n 4 241 LEU n 4 242 PRO n 4 243 SER n 4 244 LYS n 4 245 ASN n 4 246 ASP n 4 247 GLU n 4 248 LYS n 4 249 GLU n 4 250 TYR n 4 251 PRO n 4 252 HIS n 4 253 ARG n 4 254 ARG n 4 255 ILE n 4 256 ASP n 4 257 ILE n 4 258 ARG n 4 259 LEU n 4 260 ILE n 4 261 PRO n 4 262 LYS n 4 263 ASP n 4 264 GLN n 4 265 TYR n 4 266 TYR n 4 267 CYS n 4 268 GLY n 4 269 VAL n 4 270 LEU n 4 271 TYR n 4 272 PHE n 4 273 THR n 4 274 GLY n 4 275 SER n 4 276 ASP n 4 277 ILE n 4 278 PHE n 4 279 ASN n 4 280 LYS n 4 281 ASN n 4 282 MET n 4 283 ARG n 4 284 ALA n 4 285 HIS n 4 286 ALA n 4 287 LEU n 4 288 GLU n 4 289 LYS n 4 290 GLY n 4 291 PHE n 4 292 THR n 4 293 ILE n 4 294 ASN n 4 295 GLU n 4 296 TYR n 4 297 THR n 4 298 ILE n 4 299 ARG n 4 300 PRO n 4 301 LEU n 4 302 GLY n 4 303 VAL n 4 304 THR n 4 305 GLY n 4 306 VAL n 4 307 ALA n 4 308 GLY n 4 309 GLU n 4 310 PRO n 4 311 LEU n 4 312 PRO n 4 313 VAL n 4 314 ASP n 4 315 SER n 4 316 GLU n 4 317 LYS n 4 318 ASP n 4 319 ILE n 4 320 PHE n 4 321 ASP n 4 322 TYR n 4 323 ILE n 4 324 GLN n 4 325 TRP n 4 326 LYS n 4 327 TYR n 4 328 ARG n 4 329 GLU n 4 330 PRO n 4 331 LYS n 4 332 ASP n 4 333 ARG n 4 334 SER n 4 335 GLU n # _entity_src_gen.entity_id 4 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location NUCLEUS _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP DPOB_HUMAN P06746 4 1 ? ? 2 PDB 1BPX 1BPX 1 ? ? ? 3 PDB 1BPX 1BPX 2 ? ? ? 4 PDB 1BPX 1BPX 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BPX A 2 ? 335 ? P06746 1 ? 334 ? 2 335 2 2 1BPX T 1 ? 16 ? 1BPX 1 ? 16 ? 1 16 3 3 1BPX P 1 ? 10 ? 1BPX 1 ? 10 ? 1 10 4 4 1BPX D 1 ? 5 ? 1BPX 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1BPX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 41.4000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;PROTEIN-DNA COMPLEX WAS CRYSTALLIZED USING A RESERVOIR CONTAINING 13.8% PEG 3350, 360 MM SODIUM ACETATE, AND 50 MM IMIDAZOLE, PH 7.0., VAPOR DIFFUSION ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-11-14 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BPX _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F 0.000 _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 16536 _reflns.number_all ? _reflns.percent_possible_obs 97.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.047 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.900 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.400 _reflns_shell.d_res_low 2.490 _reflns_shell.percent_possible_all 96.90 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.27 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BPX _refine.ls_number_reflns_obs 16536 _refine.ls_number_reflns_all 16536 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs 97.000 _refine.ls_R_factor_R_work 0.253 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MOEWS _refine.solvent_model_param_ksol 0.778 _refine.solvent_model_param_bsol 86.30 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1BPY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2653 _refine_hist.pdbx_number_atoms_nucleic_acid 633 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 3369 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.020 ? 0.450 3451 'X-RAY DIFFRACTION' ? t_angle_deg 2.900 ? 1.000 4721 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 22.00 ? 1.000 2015 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.011 ? 1.000 74 'X-RAY DIFFRACTION' ? t_gen_planes 0.007 ? 10.00 430 'X-RAY DIFFRACTION' ? t_it 6.500 ? 0.025 3451 'X-RAY DIFFRACTION' ? t_nbd 0.019 ? 10.00 255 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1BPX _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.253 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1BPX _struct.title 'DNA POLYMERASE BETA/DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BPX _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'NUCLEOTIDYLTRANSFERASE, DNA REPAIR, BASE EXCISION REPAIR PATHWAY, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 A GLY D 13 ? SER D 30 ? GLY A 13 SER A 30 1 ? 18 HELX_P HELX_P2 B ILE D 33 ? LYS D 48 ? ILE A 33 LYS A 48 1 ? 16 HELX_P HELX_P3 C GLY D 56 ? LYS D 61 ? GLY A 56 LYS A 61 1 ? 6 HELX_P HELX_P4 D THR D 67 ? THR D 79 ? THR A 67 THR A 79 1 'SEE REMARK 650' 13 HELX_P HELX_P5 E ARG D 83 ? GLN D 90 ? ARG A 83 GLN A 90 1 ? 8 HELX_P HELX_P6 F ASP D 92 ? ARG D 102 ? ASP A 92 ARG A 102 1 ? 11 HELX_P HELX_P7 G PRO D 108 ? ASP D 116 ? PRO A 108 ASP A 116 1 'SEE REMARK 650' 9 HELX_P HELX_P8 H LEU D 122 ? LYS D 127 ? LEU A 122 LYS A 127 1 ? 6 HELX_P HELX_P9 I HIS D 134 ? GLU D 147 ? HIS A 134 GLU A 147 1 ? 14 HELX_P HELX_P10 J ARG D 152 ? VAL D 169 ? ARG A 152 VAL A 169 1 ? 18 HELX_P HELX_P11 K SER D 180 ? ARG D 183 ? SER A 180 ARG A 183 1 ? 4 HELX_P HELX_P12 L PRO D 208 ? LYS D 220 ? PRO A 208 LYS A 220 1 ? 13 HELX_P HELX_P13 M LYS D 262 ? THR D 273 ? LYS A 262 THR A 273 1 ? 12 HELX_P HELX_P14 N ASP D 276 ? GLU D 288 ? ASP A 276 GLU A 288 1 ? 13 HELX_P HELX_P15 O GLU D 316 ? ILE D 323 ? GLU A 316 ILE A 323 1 ? 8 HELX_P HELX_P16 P PRO D 330 ? ASP D 332 ? PRO A 330 ASP A 332 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B DG 9 OP1 ? ? ? 1_555 F NA . NA ? ? P DG 9 A NA 341 1_555 ? ? ? ? ? ? ? 1.967 ? ? metalc2 metalc ? ? H HOH . O ? ? ? 1_555 F NA . NA ? ? P HOH 501 A NA 341 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc3 metalc ? ? C DC 3 OP1 ? ? ? 1_555 E NA . NA ? ? D DC 3 D NA 342 1_555 ? ? ? ? ? ? ? 2.522 ? ? metalc4 metalc ? ? C DC 3 OP2 ? ? ? 1_555 E NA . NA ? ? D DC 3 D NA 342 1_555 ? ? ? ? ? ? ? 2.848 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 D LYS 60 O ? ? D NA 342 A LYS 60 1_555 ? ? ? ? ? ? ? 2.604 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 D LEU 62 O ? ? D NA 342 A LEU 62 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc7 metalc ? ? E NA . NA ? ? ? 1_555 D VAL 65 O ? ? D NA 342 A VAL 65 1_555 ? ? ? ? ? ? ? 2.472 ? ? metalc8 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? D NA 342 A HOH 502 1_555 ? ? ? ? ? ? ? 1.816 ? ? metalc9 metalc ? ? D THR 101 O ? ? ? 1_555 F NA . NA ? ? A THR 101 A NA 341 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc10 metalc ? ? D VAL 103 O ? ? ? 1_555 F NA . NA ? ? A VAL 103 A NA 341 1_555 ? ? ? ? ? ? ? 2.810 ? ? metalc11 metalc ? ? D ILE 106 O ? ? ? 1_555 F NA . NA ? ? A ILE 106 A NA 341 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc12 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 341 A HOH 500 1_555 ? ? ? ? ? ? ? 2.692 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 C DG 5 N1 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 C DG 5 O6 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 C DG 5 N2 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 C DC 3 N3 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 C DC 3 O2 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 C DC 3 N4 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 C DT 2 N3 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 C DT 2 O4 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 C DG 1 N1 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 C DG 1 O6 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 C DG 1 N2 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 10 N3 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 10 O2 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 10 N4 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 9 N1 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 9 O6 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 9 N2 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 7 N1 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 7 O6 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 7 N2 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 6 N3 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 6 O4 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 5 N1 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 5 N6 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4 N1 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4 O6 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4 N2 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 3 N3 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 3 O4 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 1 N1 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 1 O6 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 1 N2 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id D _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 D _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 2 ? S2 ? 5 ? S3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? parallel S2 3 4 ? anti-parallel S2 4 5 ? anti-parallel S3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 ILE D 150 ? PRO D 151 ? ILE A 150 PRO A 151 S1 2 SER D 187 ? SER D 188 ? SER A 187 SER A 188 S2 1 ILE D 174 ? CYS D 178 ? ILE A 174 CYS A 178 S2 2 MET D 191 ? THR D 196 ? MET A 191 THR A 196 S2 3 ARG D 253 ? ARG D 258 ? ARG A 253 ARG A 258 S2 4 LYS D 234 ? CYS D 239 ? LYS A 234 CYS A 239 S2 5 SER D 229 ? GLY D 231 ? SER A 229 GLY A 231 S3 1 PHE D 291 ? ASN D 294 ? PHE A 291 ASN A 294 S3 2 THR D 297 ? PRO D 300 ? THR A 297 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1 1 2 O ILE D 150 ? O ILE A 150 N SER D 188 ? N SER A 188 S2 1 2 O ILE D 174 ? O ILE A 174 N THR D 196 ? N THR A 196 S2 2 3 O MET D 191 ? O MET A 191 N ASP D 256 ? N ASP A 256 S2 3 4 O ARG D 253 ? O ARG A 253 N CYS D 239 ? N CYS A 239 S2 4 5 N MET D 236 ? N MET A 236 O SER D 229 ? O SER A 229 S3 1 2 O THR D 292 ? O THR A 292 N ARG D 299 ? N ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details ACT Unknown ? ? ? ? 3 ? AC1 Software A NA 341 ? 6 'BINDING SITE FOR RESIDUE NA A 341' AC2 Software D NA 342 ? 5 'BINDING SITE FOR RESIDUE NA D 342' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 ACT 3 ASP D 190 ? ASP A 190 . ? 1_555 ? 2 ACT 3 ASP D 192 ? ASP A 192 . ? 1_555 ? 3 ACT 3 ASP D 256 ? ASP A 256 . ? 1_555 ? 4 AC1 6 THR D 101 ? THR A 101 . ? 1_555 ? 5 AC1 6 VAL D 103 ? VAL A 103 . ? 1_555 ? 6 AC1 6 ILE D 106 ? ILE A 106 . ? 1_555 ? 7 AC1 6 HOH J . ? HOH A 500 . ? 1_555 ? 8 AC1 6 DG B 9 ? DG P 9 . ? 1_555 ? 9 AC1 6 HOH H . ? HOH P 501 . ? 1_555 ? 10 AC2 5 LYS D 60 ? LYS A 60 . ? 1_555 ? 11 AC2 5 LEU D 62 ? LEU A 62 . ? 1_555 ? 12 AC2 5 VAL D 65 ? VAL A 65 . ? 1_555 ? 13 AC2 5 HOH J . ? HOH A 502 . ? 1_555 ? 14 AC2 5 DC C 3 ? DC D 3 . ? 1_555 ? # _database_PDB_matrix.entry_id 1BPX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BPX _atom_sites.fract_transf_matrix[1][1] 0.018951 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005560 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012595 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019079 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C T . n A 1 2 DC 2 2 2 DC C T . n A 1 3 DG 3 3 3 DG G T . n A 1 4 DA 4 4 4 DA A T . n A 1 5 DC 5 5 5 DC C T . n A 1 6 DG 6 6 6 DG G T . n A 1 7 DG 7 7 7 DG G T . n A 1 8 DC 8 8 8 DC C T . n A 1 9 DG 9 9 9 DG G T . n A 1 10 DC 10 10 10 DC C T . n A 1 11 DA 11 11 11 DA A T . n A 1 12 DT 12 12 12 DT T T . n A 1 13 DC 13 13 13 DC C T . n A 1 14 DA 14 14 14 DA A T . n A 1 15 DG 15 15 15 DG G T . n A 1 16 DC 16 16 16 DC C T . n B 2 1 DG 1 1 1 DG G P . n B 2 2 DC 2 2 2 DC C P . n B 2 3 DT 3 3 3 DT T P . n B 2 4 DG 4 4 4 DG G P . n B 2 5 DA 5 5 5 DA A P . n B 2 6 DT 6 6 6 DT T P . n B 2 7 DG 7 7 7 DG G P . n B 2 8 DC 8 8 8 DC C P . n B 2 9 DG 9 9 9 DG G P . n B 2 10 DC 10 10 10 DC C P . n C 3 1 DG 1 1 1 DG G D . n C 3 2 DT 2 2 2 DT T D . n C 3 3 DC 3 3 3 DC C D . n C 3 4 DG 4 4 4 DG G D . n C 3 5 DG 5 5 5 DG G D . n D 4 1 MET 1 1 ? ? ? A . n D 4 2 SER 2 2 ? ? ? A . n D 4 3 LYS 3 3 ? ? ? A . n D 4 4 ARG 4 4 ? ? ? A . n D 4 5 LYS 5 5 5 LYS LYS A . n D 4 6 ALA 6 6 6 ALA ALA A . n D 4 7 PRO 7 7 7 PRO PRO A . n D 4 8 GLN 8 8 8 GLN GLN A . n D 4 9 GLU 9 9 9 GLU GLU A . n D 4 10 THR 10 10 10 THR THR A . n D 4 11 LEU 11 11 11 LEU LEU A . n D 4 12 ASN 12 12 12 ASN ASN A . n D 4 13 GLY 13 13 13 GLY GLY A . n D 4 14 GLY 14 14 14 GLY GLY A . n D 4 15 ILE 15 15 15 ILE ILE A . n D 4 16 THR 16 16 16 THR THR A . n D 4 17 ASP 17 17 17 ASP ASP A . n D 4 18 MET 18 18 18 MET MET A . n D 4 19 LEU 19 19 19 LEU LEU A . n D 4 20 THR 20 20 20 THR THR A . n D 4 21 GLU 21 21 21 GLU GLU A . n D 4 22 LEU 22 22 22 LEU LEU A . n D 4 23 ALA 23 23 23 ALA ALA A . n D 4 24 ASN 24 24 24 ASN ASN A . n D 4 25 PHE 25 25 25 PHE PHE A . n D 4 26 GLU 26 26 26 GLU GLU A . n D 4 27 LYS 27 27 27 LYS LYS A . n D 4 28 ASN 28 28 28 ASN ASN A . n D 4 29 VAL 29 29 29 VAL VAL A . n D 4 30 SER 30 30 30 SER SER A . n D 4 31 GLN 31 31 31 GLN GLN A . n D 4 32 ALA 32 32 32 ALA ALA A . n D 4 33 ILE 33 33 33 ILE ILE A . n D 4 34 HIS 34 34 34 HIS HIS A . n D 4 35 LYS 35 35 35 LYS LYS A . n D 4 36 TYR 36 36 36 TYR TYR A . n D 4 37 ASN 37 37 37 ASN ASN A . n D 4 38 ALA 38 38 38 ALA ALA A . n D 4 39 TYR 39 39 39 TYR TYR A . n D 4 40 ARG 40 40 40 ARG ARG A . n D 4 41 LYS 41 41 41 LYS LYS A . n D 4 42 ALA 42 42 42 ALA ALA A . n D 4 43 ALA 43 43 43 ALA ALA A . n D 4 44 SER 44 44 44 SER SER A . n D 4 45 VAL 45 45 45 VAL VAL A . n D 4 46 ILE 46 46 46 ILE ILE A . n D 4 47 ALA 47 47 47 ALA ALA A . n D 4 48 LYS 48 48 48 LYS LYS A . n D 4 49 TYR 49 49 49 TYR TYR A . n D 4 50 PRO 50 50 50 PRO PRO A . n D 4 51 HIS 51 51 51 HIS HIS A . n D 4 52 LYS 52 52 52 LYS LYS A . n D 4 53 ILE 53 53 53 ILE ILE A . n D 4 54 LYS 54 54 54 LYS LYS A . n D 4 55 SER 55 55 55 SER SER A . n D 4 56 GLY 56 56 56 GLY GLY A . n D 4 57 ALA 57 57 57 ALA ALA A . n D 4 58 GLU 58 58 58 GLU GLU A . n D 4 59 ALA 59 59 59 ALA ALA A . n D 4 60 LYS 60 60 60 LYS LYS A . n D 4 61 LYS 61 61 61 LYS LYS A . n D 4 62 LEU 62 62 62 LEU LEU A . n D 4 63 PRO 63 63 63 PRO PRO A . n D 4 64 GLY 64 64 64 GLY GLY A . n D 4 65 VAL 65 65 65 VAL VAL A . n D 4 66 GLY 66 66 66 GLY GLY A . n D 4 67 THR 67 67 67 THR THR A . n D 4 68 LYS 68 68 68 LYS LYS A . n D 4 69 ILE 69 69 69 ILE ILE A . n D 4 70 ALA 70 70 70 ALA ALA A . n D 4 71 GLU 71 71 71 GLU GLU A . n D 4 72 LYS 72 72 72 LYS LYS A . n D 4 73 ILE 73 73 73 ILE ILE A . n D 4 74 ASP 74 74 74 ASP ASP A . n D 4 75 GLU 75 75 75 GLU GLU A . n D 4 76 PHE 76 76 76 PHE PHE A . n D 4 77 LEU 77 77 77 LEU LEU A . n D 4 78 ALA 78 78 78 ALA ALA A . n D 4 79 THR 79 79 79 THR THR A . n D 4 80 GLY 80 80 80 GLY GLY A . n D 4 81 LYS 81 81 81 LYS LYS A . n D 4 82 LEU 82 82 82 LEU LEU A . n D 4 83 ARG 83 83 83 ARG ARG A . n D 4 84 LYS 84 84 84 LYS LYS A . n D 4 85 LEU 85 85 85 LEU LEU A . n D 4 86 GLU 86 86 86 GLU GLU A . n D 4 87 LYS 87 87 87 LYS LYS A . n D 4 88 ILE 88 88 88 ILE ILE A . n D 4 89 ARG 89 89 89 ARG ARG A . n D 4 90 GLN 90 90 90 GLN GLN A . n D 4 91 ASP 91 91 91 ASP ASP A . n D 4 92 ASP 92 92 92 ASP ASP A . n D 4 93 THR 93 93 93 THR THR A . n D 4 94 SER 94 94 94 SER SER A . n D 4 95 SER 95 95 95 SER SER A . n D 4 96 SER 96 96 96 SER SER A . n D 4 97 ILE 97 97 97 ILE ILE A . n D 4 98 ASN 98 98 98 ASN ASN A . n D 4 99 PHE 99 99 99 PHE PHE A . n D 4 100 LEU 100 100 100 LEU LEU A . n D 4 101 THR 101 101 101 THR THR A . n D 4 102 ARG 102 102 102 ARG ARG A . n D 4 103 VAL 103 103 103 VAL VAL A . n D 4 104 SER 104 104 104 SER SER A . n D 4 105 GLY 105 105 105 GLY GLY A . n D 4 106 ILE 106 106 106 ILE ILE A . n D 4 107 GLY 107 107 107 GLY GLY A . n D 4 108 PRO 108 108 108 PRO PRO A . n D 4 109 SER 109 109 109 SER SER A . n D 4 110 ALA 110 110 110 ALA ALA A . n D 4 111 ALA 111 111 111 ALA ALA A . n D 4 112 ARG 112 112 112 ARG ARG A . n D 4 113 LYS 113 113 113 LYS LYS A . n D 4 114 PHE 114 114 114 PHE PHE A . n D 4 115 VAL 115 115 115 VAL VAL A . n D 4 116 ASP 116 116 116 ASP ASP A . n D 4 117 GLU 117 117 117 GLU GLU A . n D 4 118 GLY 118 118 118 GLY GLY A . n D 4 119 ILE 119 119 119 ILE ILE A . n D 4 120 LYS 120 120 120 LYS LYS A . n D 4 121 THR 121 121 121 THR THR A . n D 4 122 LEU 122 122 122 LEU LEU A . n D 4 123 GLU 123 123 123 GLU GLU A . n D 4 124 ASP 124 124 124 ASP ASP A . n D 4 125 LEU 125 125 125 LEU LEU A . n D 4 126 ARG 126 126 126 ARG ARG A . n D 4 127 LYS 127 127 127 LYS LYS A . n D 4 128 ASN 128 128 128 ASN ASN A . n D 4 129 GLU 129 129 129 GLU GLU A . n D 4 130 ASP 130 130 130 ASP ASP A . n D 4 131 LYS 131 131 131 LYS LYS A . n D 4 132 LEU 132 132 132 LEU LEU A . n D 4 133 ASN 133 133 133 ASN ASN A . n D 4 134 HIS 134 134 134 HIS HIS A . n D 4 135 HIS 135 135 135 HIS HIS A . n D 4 136 GLN 136 136 136 GLN GLN A . n D 4 137 ARG 137 137 137 ARG ARG A . n D 4 138 ILE 138 138 138 ILE ILE A . n D 4 139 GLY 139 139 139 GLY GLY A . n D 4 140 LEU 140 140 140 LEU LEU A . n D 4 141 LYS 141 141 141 LYS LYS A . n D 4 142 TYR 142 142 142 TYR TYR A . n D 4 143 PHE 143 143 143 PHE PHE A . n D 4 144 GLY 144 144 144 GLY GLY A . n D 4 145 ASP 145 145 145 ASP ASP A . n D 4 146 PHE 146 146 146 PHE PHE A . n D 4 147 GLU 147 147 147 GLU GLU A . n D 4 148 LYS 148 148 148 LYS LYS A . n D 4 149 ARG 149 149 149 ARG ARG A . n D 4 150 ILE 150 150 150 ILE ILE A . n D 4 151 PRO 151 151 151 PRO PRO A . n D 4 152 ARG 152 152 152 ARG ARG A . n D 4 153 GLU 153 153 153 GLU GLU A . n D 4 154 GLU 154 154 154 GLU GLU A . n D 4 155 MET 155 155 155 MET MET A . n D 4 156 LEU 156 156 156 LEU LEU A . n D 4 157 GLN 157 157 157 GLN GLN A . n D 4 158 MET 158 158 158 MET MET A . n D 4 159 GLN 159 159 159 GLN GLN A . n D 4 160 ASP 160 160 160 ASP ASP A . n D 4 161 ILE 161 161 161 ILE ILE A . n D 4 162 VAL 162 162 162 VAL VAL A . n D 4 163 LEU 163 163 163 LEU LEU A . n D 4 164 ASN 164 164 164 ASN ASN A . n D 4 165 GLU 165 165 165 GLU GLU A . n D 4 166 VAL 166 166 166 VAL VAL A . n D 4 167 LYS 167 167 167 LYS LYS A . n D 4 168 LYS 168 168 168 LYS LYS A . n D 4 169 VAL 169 169 169 VAL VAL A . n D 4 170 ASP 170 170 170 ASP ASP A . n D 4 171 SER 171 171 171 SER SER A . n D 4 172 GLU 172 172 172 GLU GLU A . n D 4 173 TYR 173 173 173 TYR TYR A . n D 4 174 ILE 174 174 174 ILE ILE A . n D 4 175 ALA 175 175 175 ALA ALA A . n D 4 176 THR 176 176 176 THR THR A . n D 4 177 VAL 177 177 177 VAL VAL A . n D 4 178 CYS 178 178 178 CYS CYS A . n D 4 179 GLY 179 179 179 GLY GLY A . n D 4 180 SER 180 180 180 SER SER A . n D 4 181 PHE 181 181 181 PHE PHE A . n D 4 182 ARG 182 182 182 ARG ARG A . n D 4 183 ARG 183 183 183 ARG ARG A . n D 4 184 GLY 184 184 184 GLY GLY A . n D 4 185 ALA 185 185 185 ALA ALA A . n D 4 186 GLU 186 186 186 GLU GLU A . n D 4 187 SER 187 187 187 SER SER A . n D 4 188 SER 188 188 188 SER SER A . n D 4 189 GLY 189 189 189 GLY GLY A . n D 4 190 ASP 190 190 190 ASP ASP A . n D 4 191 MET 191 191 191 MET MET A . n D 4 192 ASP 192 192 192 ASP ASP A . n D 4 193 VAL 193 193 193 VAL VAL A . n D 4 194 LEU 194 194 194 LEU LEU A . n D 4 195 LEU 195 195 195 LEU LEU A . n D 4 196 THR 196 196 196 THR THR A . n D 4 197 HIS 197 197 197 HIS HIS A . n D 4 198 PRO 198 198 198 PRO PRO A . n D 4 199 SER 199 199 199 SER SER A . n D 4 200 PHE 200 200 200 PHE PHE A . n D 4 201 THR 201 201 201 THR THR A . n D 4 202 SER 202 202 202 SER SER A . n D 4 203 GLU 203 203 203 GLU GLU A . n D 4 204 SER 204 204 204 SER SER A . n D 4 205 THR 205 205 205 THR THR A . n D 4 206 LYS 206 206 206 LYS LYS A . n D 4 207 GLN 207 207 207 GLN GLN A . n D 4 208 PRO 208 208 208 PRO PRO A . n D 4 209 LYS 209 209 209 LYS LYS A . n D 4 210 LEU 210 210 210 LEU LEU A . n D 4 211 LEU 211 211 211 LEU LEU A . n D 4 212 HIS 212 212 212 HIS HIS A . n D 4 213 GLN 213 213 213 GLN GLN A . n D 4 214 VAL 214 214 214 VAL VAL A . n D 4 215 VAL 215 215 215 VAL VAL A . n D 4 216 GLU 216 216 216 GLU GLU A . n D 4 217 GLN 217 217 217 GLN GLN A . n D 4 218 LEU 218 218 218 LEU LEU A . n D 4 219 GLN 219 219 219 GLN GLN A . n D 4 220 LYS 220 220 220 LYS LYS A . n D 4 221 VAL 221 221 221 VAL VAL A . n D 4 222 HIS 222 222 222 HIS HIS A . n D 4 223 PHE 223 223 223 PHE PHE A . n D 4 224 ILE 224 224 224 ILE ILE A . n D 4 225 THR 225 225 225 THR THR A . n D 4 226 ASP 226 226 226 ASP ASP A . n D 4 227 THR 227 227 227 THR THR A . n D 4 228 LEU 228 228 228 LEU LEU A . n D 4 229 SER 229 229 229 SER SER A . n D 4 230 LYS 230 230 230 LYS LYS A . n D 4 231 GLY 231 231 231 GLY GLY A . n D 4 232 GLU 232 232 232 GLU GLU A . n D 4 233 THR 233 233 233 THR THR A . n D 4 234 LYS 234 234 234 LYS LYS A . n D 4 235 PHE 235 235 235 PHE PHE A . n D 4 236 MET 236 236 236 MET MET A . n D 4 237 GLY 237 237 237 GLY GLY A . n D 4 238 VAL 238 238 238 VAL VAL A . n D 4 239 CYS 239 239 239 CYS CYS A . n D 4 240 GLN 240 240 240 GLN GLN A . n D 4 241 LEU 241 241 241 LEU LEU A . n D 4 242 PRO 242 242 242 PRO PRO A . n D 4 243 SER 243 243 243 SER SER A . n D 4 244 LYS 244 244 244 LYS LYS A . n D 4 245 ASN 245 245 245 ASN ASN A . n D 4 246 ASP 246 246 246 ASP ASP A . n D 4 247 GLU 247 247 247 GLU GLU A . n D 4 248 LYS 248 248 248 LYS LYS A . n D 4 249 GLU 249 249 249 GLU GLU A . n D 4 250 TYR 250 250 250 TYR TYR A . n D 4 251 PRO 251 251 251 PRO PRO A . n D 4 252 HIS 252 252 252 HIS HIS A . n D 4 253 ARG 253 253 253 ARG ARG A . n D 4 254 ARG 254 254 254 ARG ARG A . n D 4 255 ILE 255 255 255 ILE ILE A . n D 4 256 ASP 256 256 256 ASP ASP A . n D 4 257 ILE 257 257 257 ILE ILE A . n D 4 258 ARG 258 258 258 ARG ARG A . n D 4 259 LEU 259 259 259 LEU LEU A . n D 4 260 ILE 260 260 260 ILE ILE A . n D 4 261 PRO 261 261 261 PRO PRO A . n D 4 262 LYS 262 262 262 LYS LYS A . n D 4 263 ASP 263 263 263 ASP ASP A . n D 4 264 GLN 264 264 264 GLN GLN A . n D 4 265 TYR 265 265 265 TYR TYR A . n D 4 266 TYR 266 266 266 TYR TYR A . n D 4 267 CYS 267 267 267 CYS CYS A . n D 4 268 GLY 268 268 268 GLY GLY A . n D 4 269 VAL 269 269 269 VAL VAL A . n D 4 270 LEU 270 270 270 LEU LEU A . n D 4 271 TYR 271 271 271 TYR TYR A . n D 4 272 PHE 272 272 272 PHE PHE A . n D 4 273 THR 273 273 273 THR THR A . n D 4 274 GLY 274 274 274 GLY GLY A . n D 4 275 SER 275 275 275 SER SER A . n D 4 276 ASP 276 276 276 ASP ASP A . n D 4 277 ILE 277 277 277 ILE ILE A . n D 4 278 PHE 278 278 278 PHE PHE A . n D 4 279 ASN 279 279 279 ASN ASN A . n D 4 280 LYS 280 280 280 LYS LYS A . n D 4 281 ASN 281 281 281 ASN ASN A . n D 4 282 MET 282 282 282 MET MET A . n D 4 283 ARG 283 283 283 ARG ARG A . n D 4 284 ALA 284 284 284 ALA ALA A . n D 4 285 HIS 285 285 285 HIS HIS A . n D 4 286 ALA 286 286 286 ALA ALA A . n D 4 287 LEU 287 287 287 LEU LEU A . n D 4 288 GLU 288 288 288 GLU GLU A . n D 4 289 LYS 289 289 289 LYS LYS A . n D 4 290 GLY 290 290 290 GLY GLY A . n D 4 291 PHE 291 291 291 PHE PHE A . n D 4 292 THR 292 292 292 THR THR A . n D 4 293 ILE 293 293 293 ILE ILE A . n D 4 294 ASN 294 294 294 ASN ASN A . n D 4 295 GLU 295 295 295 GLU GLU A . n D 4 296 TYR 296 296 296 TYR TYR A . n D 4 297 THR 297 297 297 THR THR A . n D 4 298 ILE 298 298 298 ILE ILE A . n D 4 299 ARG 299 299 299 ARG ARG A . n D 4 300 PRO 300 300 300 PRO PRO A . n D 4 301 LEU 301 301 301 LEU LEU A . n D 4 302 GLY 302 302 302 GLY GLY A . n D 4 303 VAL 303 303 303 VAL VAL A . n D 4 304 THR 304 304 304 THR THR A . n D 4 305 GLY 305 305 305 GLY GLY A . n D 4 306 VAL 306 306 306 VAL VAL A . n D 4 307 ALA 307 307 307 ALA ALA A . n D 4 308 GLY 308 308 308 GLY GLY A . n D 4 309 GLU 309 309 309 GLU GLU A . n D 4 310 PRO 310 310 310 PRO PRO A . n D 4 311 LEU 311 311 311 LEU LEU A . n D 4 312 PRO 312 312 312 PRO PRO A . n D 4 313 VAL 313 313 313 VAL VAL A . n D 4 314 ASP 314 314 314 ASP ASP A . n D 4 315 SER 315 315 315 SER SER A . n D 4 316 GLU 316 316 316 GLU GLU A . n D 4 317 LYS 317 317 317 LYS LYS A . n D 4 318 ASP 318 318 318 ASP ASP A . n D 4 319 ILE 319 319 319 ILE ILE A . n D 4 320 PHE 320 320 320 PHE PHE A . n D 4 321 ASP 321 321 321 ASP ASP A . n D 4 322 TYR 322 322 322 TYR TYR A . n D 4 323 ILE 323 323 323 ILE ILE A . n D 4 324 GLN 324 324 324 GLN GLN A . n D 4 325 TRP 325 325 325 TRP TRP A . n D 4 326 LYS 326 326 326 LYS LYS A . n D 4 327 TYR 327 327 327 TYR TYR A . n D 4 328 ARG 328 328 328 ARG ARG A . n D 4 329 GLU 329 329 329 GLU GLU A . n D 4 330 PRO 330 330 330 PRO PRO A . n D 4 331 LYS 331 331 331 LYS LYS A . n D 4 332 ASP 332 332 332 ASP ASP A . n D 4 333 ARG 333 333 333 ARG ARG A . n D 4 334 SER 334 334 334 SER SER A . n D 4 335 GLU 335 335 335 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA 1 342 342 NA NA D . F 5 NA 1 341 341 NA NA A . G 6 HOH 1 514 514 HOH HOH T . G 6 HOH 2 516 516 HOH HOH T . G 6 HOH 3 518 518 HOH HOH T . G 6 HOH 4 519 519 HOH HOH T . G 6 HOH 5 521 521 HOH HOH T . G 6 HOH 6 525 525 HOH HOH T . G 6 HOH 7 526 526 HOH HOH T . G 6 HOH 8 527 527 HOH HOH T . G 6 HOH 9 530 530 HOH HOH T . G 6 HOH 10 531 531 HOH HOH T . G 6 HOH 11 540 540 HOH HOH T . G 6 HOH 12 544 544 HOH HOH T . G 6 HOH 13 546 546 HOH HOH T . G 6 HOH 14 549 549 HOH HOH T . G 6 HOH 15 554 554 HOH HOH T . G 6 HOH 16 559 559 HOH HOH T . G 6 HOH 17 564 564 HOH HOH T . G 6 HOH 18 566 566 HOH HOH T . G 6 HOH 19 571 571 HOH HOH T . G 6 HOH 20 581 581 HOH HOH T . G 6 HOH 21 582 582 HOH HOH T . H 6 HOH 1 501 501 HOH HOH P . H 6 HOH 2 506 506 HOH HOH P . H 6 HOH 3 508 508 HOH HOH P . H 6 HOH 4 509 509 HOH HOH P . H 6 HOH 5 513 513 HOH HOH P . H 6 HOH 6 515 515 HOH HOH P . H 6 HOH 7 528 528 HOH HOH P . H 6 HOH 8 529 529 HOH HOH P . H 6 HOH 9 560 560 HOH HOH P . H 6 HOH 10 565 565 HOH HOH P . H 6 HOH 11 572 572 HOH HOH P . H 6 HOH 12 573 573 HOH HOH P . H 6 HOH 13 578 578 HOH HOH P . H 6 HOH 14 580 580 HOH HOH P . I 6 HOH 1 535 535 HOH HOH D . I 6 HOH 2 536 536 HOH HOH D . I 6 HOH 3 537 537 HOH HOH D . I 6 HOH 4 570 570 HOH HOH D . I 6 HOH 5 575 575 HOH HOH D . I 6 HOH 6 576 576 HOH HOH D . J 6 HOH 1 500 500 HOH HOH A . J 6 HOH 2 502 502 HOH HOH A . J 6 HOH 3 504 504 HOH HOH A . J 6 HOH 4 505 505 HOH HOH A . J 6 HOH 5 507 507 HOH HOH A . J 6 HOH 6 510 510 HOH HOH A . J 6 HOH 7 511 511 HOH HOH A . J 6 HOH 8 512 512 HOH HOH A . J 6 HOH 9 517 517 HOH HOH A . J 6 HOH 10 520 520 HOH HOH A . J 6 HOH 11 522 522 HOH HOH A . J 6 HOH 12 523 523 HOH HOH A . J 6 HOH 13 524 524 HOH HOH A . J 6 HOH 14 532 532 HOH HOH A . J 6 HOH 15 533 533 HOH HOH A . J 6 HOH 16 534 534 HOH HOH A . J 6 HOH 17 538 538 HOH HOH A . J 6 HOH 18 539 539 HOH HOH A . J 6 HOH 19 541 541 HOH HOH A . J 6 HOH 20 542 542 HOH HOH A . J 6 HOH 21 543 543 HOH HOH A . J 6 HOH 22 545 545 HOH HOH A . J 6 HOH 23 547 547 HOH HOH A . J 6 HOH 24 548 548 HOH HOH A . J 6 HOH 25 550 550 HOH HOH A . J 6 HOH 26 551 551 HOH HOH A . J 6 HOH 27 552 552 HOH HOH A . J 6 HOH 28 553 553 HOH HOH A . J 6 HOH 29 555 555 HOH HOH A . J 6 HOH 30 557 557 HOH HOH A . J 6 HOH 31 558 558 HOH HOH A . J 6 HOH 32 561 561 HOH HOH A . J 6 HOH 33 562 562 HOH HOH A . J 6 HOH 34 563 563 HOH HOH A . J 6 HOH 35 567 567 HOH HOH A . J 6 HOH 36 568 568 HOH HOH A . J 6 HOH 37 569 569 HOH HOH A . J 6 HOH 38 574 574 HOH HOH A . J 6 HOH 39 577 577 HOH HOH A . J 6 HOH 40 579 579 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? H HOH . ? P HOH 501 ? 1_555 91.8 ? 2 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 173.3 ? 3 O ? H HOH . ? P HOH 501 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 92.0 ? 4 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 91.0 ? 5 O ? H HOH . ? P HOH 501 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 161.4 ? 6 O ? D THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 87.1 ? 7 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 93.0 ? 8 O ? H HOH . ? P HOH 501 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 82.4 ? 9 O ? D THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 92.9 ? 10 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 79.1 ? 11 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 90.8 ? 12 O ? H HOH . ? P HOH 501 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 104.3 ? 13 O ? D THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 83.0 ? 14 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 94.1 ? 15 O ? D ILE 106 ? A ILE 106 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 172.2 ? 16 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 OP2 ? C DC 3 ? D DC 3 ? 1_555 56.6 ? 17 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 150.8 ? 18 OP2 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 143.4 ? 19 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 90.7 ? 20 OP2 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 136.1 ? 21 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 60.3 ? 22 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 84.9 ? 23 OP2 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 67.6 ? 24 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 87.6 ? 25 O ? D LEU 62 ? A LEU 62 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 82.5 ? 26 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 98.1 ? 27 OP2 ? C DC 3 ? D DC 3 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 132.5 ? 28 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 78.8 ? 29 O ? D LEU 62 ? A LEU 62 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 74.9 ? 30 O ? D VAL 65 ? A VAL 65 ? 1_555 NA ? E NA . ? D NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 157.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-06-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MERLOT phasing . ? 3 TNT refinement 5D ? 4 # _pdbx_entry_details.entry_id 1BPX _pdbx_entry_details.compound_details ;THE 5'-TERMINUS OF G D 1 IS PHOSPHORYLATED. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 C _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ILE _pdbx_validate_close_contact.auth_seq_id_1 150 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 CD _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 PRO _pdbx_validate_close_contact.auth_seq_id_2 151 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.77 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 T DA 4 ? ? C4 T DA 4 ? ? 1.252 1.344 -0.092 0.006 N 2 1 C6 T DA 4 ? ? N1 T DA 4 ? ? 1.276 1.351 -0.075 0.007 N 3 1 "O3'" T DG 7 ? ? "C3'" T DG 7 ? ? 1.375 1.419 -0.044 0.006 N 4 1 C5 T DG 7 ? ? C6 T DG 7 ? ? 1.343 1.419 -0.076 0.010 N 5 1 C6 T DG 7 ? ? N1 T DG 7 ? ? 1.343 1.391 -0.048 0.007 N 6 1 P T DT 12 ? ? "O5'" T DT 12 ? ? 1.530 1.593 -0.063 0.010 N 7 1 "O3'" T DA 14 ? ? "C3'" T DA 14 ? ? 1.378 1.419 -0.041 0.006 N 8 1 N9 T DG 15 ? ? C4 T DG 15 ? ? 1.317 1.375 -0.058 0.008 N 9 1 N1 T DC 16 ? ? C2 T DC 16 ? ? 1.333 1.397 -0.064 0.010 N 10 1 "O3'" P DG 1 ? ? "C3'" P DG 1 ? ? 1.378 1.419 -0.041 0.006 N 11 1 N3 P DG 1 ? ? C4 P DG 1 ? ? 1.304 1.350 -0.046 0.007 N 12 1 N9 P DG 1 ? ? C4 P DG 1 ? ? 1.311 1.375 -0.064 0.008 N 13 1 "O3'" P DA 5 ? ? "C3'" P DA 5 ? ? 1.331 1.419 -0.088 0.006 N 14 1 "O3'" P DT 6 ? ? "C3'" P DT 6 ? ? 1.373 1.419 -0.046 0.006 N 15 1 C2 P DC 8 ? ? O2 P DC 8 ? ? 1.179 1.240 -0.061 0.009 N 16 1 N1 P DC 8 ? ? C6 P DC 8 ? ? 1.327 1.367 -0.040 0.006 N 17 1 "O3'" P DG 9 ? ? "C3'" P DG 9 ? ? 1.351 1.419 -0.068 0.006 N 18 1 P D DG 1 ? ? OP3 D DG 1 ? ? 1.481 1.607 -0.126 0.012 N 19 1 N3 D DG 1 ? ? C4 D DG 1 ? ? 1.304 1.350 -0.046 0.007 N 20 1 C4 D DG 1 ? ? C5 D DG 1 ? ? 1.334 1.379 -0.045 0.007 N 21 1 C5 D DG 1 ? ? N7 D DG 1 ? ? 1.449 1.388 0.061 0.006 N 22 1 C4 D DT 2 ? ? C5 D DT 2 ? ? 1.368 1.445 -0.077 0.009 N 23 1 "C5'" D DC 3 ? ? "C4'" D DC 3 ? ? 1.569 1.512 0.057 0.007 N 24 1 C5 D DG 4 ? ? N7 D DG 4 ? ? 1.434 1.388 0.046 0.006 N 25 1 N7 D DG 4 ? ? C8 D DG 4 ? ? 1.345 1.305 0.040 0.006 N 26 1 C5 D DG 5 ? ? C6 D DG 5 ? ? 1.346 1.419 -0.073 0.010 N 27 1 N9 D DG 5 ? ? C4 D DG 5 ? ? 1.304 1.375 -0.071 0.008 N 28 1 CB A GLU 9 ? ? CG A GLU 9 ? ? 1.646 1.517 0.129 0.019 N 29 1 CD A GLU 21 ? ? OE2 A GLU 21 ? ? 1.320 1.252 0.068 0.011 N 30 1 CD A GLU 26 ? ? OE2 A GLU 26 ? ? 1.346 1.252 0.094 0.011 N 31 1 CD A GLU 71 ? ? OE2 A GLU 71 ? ? 1.327 1.252 0.075 0.011 N 32 1 CD A GLU 86 ? ? OE2 A GLU 86 ? ? 1.343 1.252 0.091 0.011 N 33 1 CD A GLU 117 ? ? OE2 A GLU 117 ? ? 1.343 1.252 0.091 0.011 N 34 1 CD A GLU 123 ? ? OE2 A GLU 123 ? ? 1.327 1.252 0.075 0.011 N 35 1 CD A GLU 147 ? ? OE2 A GLU 147 ? ? 1.333 1.252 0.081 0.011 N 36 1 CD A GLU 153 ? ? OE1 A GLU 153 ? ? 1.323 1.252 0.071 0.011 N 37 1 CD A GLU 154 ? ? OE2 A GLU 154 ? ? 1.319 1.252 0.067 0.011 N 38 1 CD A GLU 172 ? ? OE2 A GLU 172 ? ? 1.340 1.252 0.088 0.011 N 39 1 CD A GLU 186 ? ? OE2 A GLU 186 ? ? 1.340 1.252 0.088 0.011 N 40 1 CD A GLU 203 ? ? OE2 A GLU 203 ? ? 1.320 1.252 0.068 0.011 N 41 1 CD A GLU 216 ? ? OE2 A GLU 216 ? ? 1.319 1.252 0.067 0.011 N 42 1 CD A GLU 232 ? ? OE2 A GLU 232 ? ? 1.328 1.252 0.076 0.011 N 43 1 CD A GLU 249 ? ? OE2 A GLU 249 ? ? 1.324 1.252 0.072 0.011 N 44 1 CD A GLU 295 ? ? OE2 A GLU 295 ? ? 1.328 1.252 0.076 0.011 N 45 1 CD A GLU 316 ? ? OE2 A GLU 316 ? ? 1.318 1.252 0.066 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" T DC 1 ? ? "C1'" T DC 1 ? ? N1 T DC 1 ? ? 101.39 108.00 -6.61 0.70 N 2 1 C2 T DC 2 ? ? N3 T DC 2 ? ? C4 T DC 2 ? ? 124.15 119.90 4.25 0.50 N 3 1 N3 T DC 2 ? ? C4 T DC 2 ? ? C5 T DC 2 ? ? 117.40 121.90 -4.50 0.40 N 4 1 N3 T DC 2 ? ? C4 T DC 2 ? ? N4 T DC 2 ? ? 123.48 118.00 5.48 0.70 N 5 1 "C3'" T DC 2 ? ? "O3'" T DC 2 ? ? P T DG 3 ? ? 129.37 119.70 9.67 1.20 Y 6 1 P T DG 3 ? ? "O5'" T DG 3 ? ? "C5'" T DG 3 ? ? 110.99 120.90 -9.91 1.60 N 7 1 C8 T DG 3 ? ? N9 T DG 3 ? ? C4 T DG 3 ? ? 109.13 106.40 2.73 0.40 N 8 1 "O4'" T DC 5 ? ? "C1'" T DC 5 ? ? N1 T DC 5 ? ? 112.04 108.30 3.74 0.30 N 9 1 C8 T DG 6 ? ? N9 T DG 6 ? ? C4 T DG 6 ? ? 109.04 106.40 2.64 0.40 N 10 1 "C5'" T DG 7 ? ? "C4'" T DG 7 ? ? "O4'" T DG 7 ? ? 116.44 109.80 6.64 1.10 N 11 1 C8 T DG 7 ? ? N9 T DG 7 ? ? C4 T DG 7 ? ? 110.15 106.40 3.75 0.40 N 12 1 "O5'" T DC 8 ? ? "C5'" T DC 8 ? ? "C4'" T DC 8 ? ? 103.77 109.40 -5.63 0.80 N 13 1 "O4'" T DC 8 ? ? "C1'" T DC 8 ? ? N1 T DC 8 ? ? 114.81 108.30 6.51 0.30 N 14 1 "O4'" T DC 10 ? ? "C1'" T DC 10 ? ? N1 T DC 10 ? ? 113.41 108.30 5.11 0.30 N 15 1 "O4'" T DA 11 ? ? "C1'" T DA 11 ? ? N9 T DA 11 ? ? 102.58 108.00 -5.42 0.70 N 16 1 C8 T DA 11 ? ? N9 T DA 11 ? ? C4 T DA 11 ? ? 108.66 105.80 2.86 0.40 N 17 1 "O5'" T DT 12 ? ? "C5'" T DT 12 ? ? "C4'" T DT 12 ? ? 103.71 109.40 -5.69 0.80 N 18 1 "O4'" T DT 12 ? ? "C1'" T DT 12 ? ? N1 T DT 12 ? ? 114.54 108.30 6.24 0.30 N 19 1 "C3'" T DT 12 ? ? "O3'" T DT 12 ? ? P T DC 13 ? ? 127.07 119.70 7.37 1.20 Y 20 1 "O4'" T DC 13 ? ? "C1'" T DC 13 ? ? "C2'" T DC 13 ? ? 110.01 106.80 3.21 0.50 N 21 1 N1 T DC 13 ? ? "C1'" T DC 13 ? ? "C2'" T DC 13 ? ? 124.48 114.30 10.18 1.40 N 22 1 N9 T DA 14 ? ? "C1'" T DA 14 ? ? "C2'" T DA 14 ? ? 124.28 114.30 9.98 1.40 N 23 1 "O4'" T DA 14 ? ? "C1'" T DA 14 ? ? N9 T DA 14 ? ? 100.81 108.00 -7.19 0.70 N 24 1 C8 T DA 14 ? ? N9 T DA 14 ? ? C4 T DA 14 ? ? 109.14 105.80 3.34 0.40 N 25 1 N3 T DG 15 ? ? C4 T DG 15 ? ? C5 T DG 15 ? ? 131.85 128.60 3.25 0.50 N 26 1 N7 T DG 15 ? ? C8 T DG 15 ? ? N9 T DG 15 ? ? 109.91 113.10 -3.19 0.50 N 27 1 C8 T DG 15 ? ? N9 T DG 15 ? ? C4 T DG 15 ? ? 110.49 106.40 4.09 0.40 N 28 1 "O4'" T DC 16 ? ? "C1'" T DC 16 ? ? "C2'" T DC 16 ? ? 110.45 106.80 3.65 0.50 N 29 1 N1 T DC 16 ? ? C2 T DC 16 ? ? O2 T DC 16 ? ? 114.63 118.90 -4.27 0.60 N 30 1 N7 P DG 1 ? ? C8 P DG 1 ? ? N9 P DG 1 ? ? 110.06 113.10 -3.04 0.50 N 31 1 N3 P DG 1 ? ? C4 P DG 1 ? ? N9 P DG 1 ? ? 122.24 126.00 -3.76 0.60 N 32 1 "O4'" P DC 2 ? ? "C1'" P DC 2 ? ? "C2'" P DC 2 ? ? 111.08 106.80 4.28 0.50 N 33 1 "O4'" P DC 2 ? ? "C1'" P DC 2 ? ? N1 P DC 2 ? ? 113.16 108.30 4.86 0.30 N 34 1 C8 P DG 4 ? ? N9 P DG 4 ? ? C4 P DG 4 ? ? 109.37 106.40 2.97 0.40 N 35 1 "C1'" P DA 5 ? ? "O4'" P DA 5 ? ? "C4'" P DA 5 ? ? 114.57 110.30 4.27 0.70 N 36 1 N9 P DA 5 ? ? "C1'" P DA 5 ? ? "C2'" P DA 5 ? ? 123.61 114.30 9.31 1.40 N 37 1 C8 P DA 5 ? ? N9 P DA 5 ? ? C4 P DA 5 ? ? 108.42 105.80 2.62 0.40 N 38 1 "O5'" P DT 6 ? ? "C5'" P DT 6 ? ? "C4'" P DT 6 ? ? 104.59 109.40 -4.81 0.80 N 39 1 N1 P DT 6 ? ? "C1'" P DT 6 ? ? "C2'" P DT 6 ? ? 127.20 114.30 12.90 1.40 N 40 1 N9 P DG 7 ? ? "C1'" P DG 7 ? ? "C2'" P DG 7 ? ? 123.10 114.30 8.80 1.40 N 41 1 "O4'" P DG 7 ? ? "C1'" P DG 7 ? ? N9 P DG 7 ? ? 99.25 108.00 -8.75 0.70 N 42 1 "O4'" P DG 9 ? ? "C1'" P DG 9 ? ? N9 P DG 9 ? ? 103.36 108.00 -4.64 0.70 N 43 1 N7 P DG 9 ? ? C8 P DG 9 ? ? N9 P DG 9 ? ? 109.46 113.10 -3.64 0.50 N 44 1 C8 P DG 9 ? ? N9 P DG 9 ? ? C4 P DG 9 ? ? 109.82 106.40 3.42 0.40 N 45 1 P P DC 10 ? ? "O5'" P DC 10 ? ? "C5'" P DC 10 ? ? 104.75 120.90 -16.15 1.60 N 46 1 "O4'" P DC 10 ? ? "C1'" P DC 10 ? ? N1 P DC 10 ? ? 111.83 108.30 3.53 0.30 N 47 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 101.10 108.00 -6.90 0.70 N 48 1 N7 D DG 1 ? ? C8 D DG 1 ? ? N9 D DG 1 ? ? 109.37 113.10 -3.73 0.50 N 49 1 C8 D DG 1 ? ? N9 D DG 1 ? ? C4 D DG 1 ? ? 109.87 106.40 3.47 0.40 N 50 1 N1 D DT 2 ? ? "C1'" D DT 2 ? ? "C2'" D DT 2 ? ? 126.31 114.30 12.01 1.40 N 51 1 C2 D DT 2 ? ? N3 D DT 2 ? ? C4 D DT 2 ? ? 123.02 127.20 -4.18 0.60 N 52 1 "O5'" D DG 4 ? ? "C5'" D DG 4 ? ? "C4'" D DG 4 ? ? 102.71 109.40 -6.69 0.80 N 53 1 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 112.20 108.30 3.90 0.30 N 54 1 N7 D DG 4 ? ? C8 D DG 4 ? ? N9 D DG 4 ? ? 108.36 113.10 -4.74 0.50 N 55 1 C8 D DG 4 ? ? N9 D DG 4 ? ? C4 D DG 4 ? ? 110.58 106.40 4.18 0.40 N 56 1 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? "C2'" D DG 5 ? ? 110.75 106.80 3.95 0.50 N 57 1 C2 D DG 5 ? ? N3 D DG 5 ? ? C4 D DG 5 ? ? 108.09 111.90 -3.81 0.50 N 58 1 N3 D DG 5 ? ? C4 D DG 5 ? ? C5 D DG 5 ? ? 133.70 128.60 5.10 0.50 N 59 1 N7 D DG 5 ? ? C8 D DG 5 ? ? N9 D DG 5 ? ? 109.93 113.10 -3.17 0.50 N 60 1 C8 D DG 5 ? ? N9 D DG 5 ? ? C4 D DG 5 ? ? 110.26 106.40 3.86 0.40 N 61 1 N3 D DG 5 ? ? C4 D DG 5 ? ? N9 D DG 5 ? ? 121.44 126.00 -4.56 0.60 N 62 1 C4 D DG 5 ? ? N9 D DG 5 ? ? "C1'" D DG 5 ? ? 117.91 126.50 -8.59 1.30 N 63 1 C A ALA 6 ? ? N A PRO 7 ? ? CA A PRO 7 ? ? 129.08 119.30 9.78 1.50 Y 64 1 N A GLN 8 ? ? CA A GLN 8 ? ? C A GLN 8 ? ? 134.89 111.00 23.89 2.70 N 65 1 CB A ASP 17 ? ? CG A ASP 17 ? ? OD2 A ASP 17 ? ? 111.78 118.30 -6.52 0.90 N 66 1 C A TYR 49 ? ? N A PRO 50 ? ? CA A PRO 50 ? ? 128.57 119.30 9.27 1.50 Y 67 1 N A LYS 60 ? ? CA A LYS 60 ? ? CB A LYS 60 ? ? 122.05 110.60 11.45 1.80 N 68 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD2 A ASP 74 ? ? 110.83 118.30 -7.47 0.90 N 69 1 CB A ASP 91 ? ? CG A ASP 91 ? ? OD2 A ASP 91 ? ? 111.38 118.30 -6.92 0.90 N 70 1 CB A ASP 92 ? ? CG A ASP 92 ? ? OD2 A ASP 92 ? ? 112.39 118.30 -5.91 0.90 N 71 1 N A PRO 108 ? ? CA A PRO 108 ? ? CB A PRO 108 ? ? 110.89 103.30 7.59 1.20 N 72 1 CB A ASP 116 ? ? CG A ASP 116 ? ? OD1 A ASP 116 ? ? 124.57 118.30 6.27 0.90 N 73 1 CB A ASP 116 ? ? CG A ASP 116 ? ? OD2 A ASP 116 ? ? 112.27 118.30 -6.03 0.90 N 74 1 CB A ASP 124 ? ? CG A ASP 124 ? ? OD2 A ASP 124 ? ? 112.58 118.30 -5.72 0.90 N 75 1 NE A ARG 126 ? ? CZ A ARG 126 ? ? NH2 A ARG 126 ? ? 116.35 120.30 -3.95 0.50 N 76 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD1 A ASP 130 ? ? 124.63 118.30 6.33 0.90 N 77 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD2 A ASP 130 ? ? 112.32 118.30 -5.98 0.90 N 78 1 C A ILE 150 ? ? N A PRO 151 ? ? CD A PRO 151 ? ? 78.20 128.40 -50.20 2.10 Y 79 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH1 A ARG 152 ? ? 124.54 120.30 4.24 0.50 N 80 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH2 A ARG 152 ? ? 117.01 120.30 -3.29 0.50 N 81 1 NE A ARG 183 ? ? CZ A ARG 183 ? ? NH1 A ARG 183 ? ? 124.10 120.30 3.80 0.50 N 82 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD2 A ASP 190 ? ? 111.29 118.30 -7.01 0.90 N 83 1 CB A ASP 246 ? ? CG A ASP 246 ? ? OD1 A ASP 246 ? ? 124.07 118.30 5.77 0.90 N 84 1 CB A ASP 246 ? ? CG A ASP 246 ? ? OD2 A ASP 246 ? ? 112.13 118.30 -6.17 0.90 N 85 1 C A TYR 250 ? ? N A PRO 251 ? ? CD A PRO 251 ? ? 101.28 128.40 -27.12 2.10 Y 86 1 NE A ARG 253 ? ? CZ A ARG 253 ? ? NH1 A ARG 253 ? ? 117.09 120.30 -3.21 0.50 N 87 1 NE A ARG 254 ? ? CZ A ARG 254 ? ? NH1 A ARG 254 ? ? 123.79 120.30 3.49 0.50 N 88 1 CB A ASP 256 ? ? CG A ASP 256 ? ? OD2 A ASP 256 ? ? 112.84 118.30 -5.46 0.90 N 89 1 CB A ASP 263 ? ? CG A ASP 263 ? ? OD2 A ASP 263 ? ? 110.77 118.30 -7.53 0.90 N 90 1 N A ASP 314 ? ? CA A ASP 314 ? ? CB A ASP 314 ? ? 121.96 110.60 11.36 1.80 N 91 1 CB A ASP 318 ? ? CG A ASP 318 ? ? OD2 A ASP 318 ? ? 112.56 118.30 -5.74 0.90 N 92 1 CB A ASP 332 ? ? CG A ASP 332 ? ? OD2 A ASP 332 ? ? 112.21 118.30 -6.09 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 7 ? ? -85.10 -82.74 2 1 GLN A 8 ? ? 47.19 -5.54 3 1 GLU A 9 ? ? -73.96 -76.41 4 1 LEU A 11 ? ? -77.96 -87.21 5 1 LYS A 27 ? ? -57.20 -72.83 6 1 GLN A 31 ? ? 83.23 28.89 7 1 PRO A 50 ? ? -53.96 18.02 8 1 ILE A 53 ? ? -43.82 154.54 9 1 ASP A 92 ? ? -47.64 -80.10 10 1 GLU A 117 ? ? -75.49 20.26 11 1 LYS A 120 ? ? -154.99 21.02 12 1 GLU A 129 ? ? -39.89 -4.20 13 1 PHE A 143 ? ? -27.39 -64.47 14 1 GLU A 147 ? ? -67.72 5.97 15 1 CYS A 178 ? ? -106.11 -151.41 16 1 ASP A 190 ? ? -162.80 -167.11 17 1 SER A 202 ? ? -29.88 -60.07 18 1 THR A 225 ? ? -78.05 -91.68 19 1 GLU A 232 ? ? -36.91 -24.73 20 1 THR A 233 ? ? -132.02 -36.47 21 1 TYR A 250 ? ? -78.55 -154.51 22 1 LYS A 262 ? ? -39.15 -36.44 23 1 TYR A 265 ? ? -49.84 -74.64 24 1 ASN A 294 ? ? -168.35 -166.01 25 1 VAL A 306 ? ? -177.65 134.91 26 1 GLU A 309 ? ? 76.45 91.25 27 1 SER A 315 ? ? 177.33 174.58 28 1 GLN A 324 ? ? 52.81 71.52 29 1 TYR A 327 ? ? -53.38 106.53 30 1 ARG A 333 ? ? -92.45 31.00 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id ASP _pdbx_validate_chiral.auth_seq_id 314 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? D MET 1 2 1 Y 1 A SER 2 ? D SER 2 3 1 Y 1 A LYS 3 ? D LYS 3 4 1 Y 1 A ARG 4 ? D ARG 4 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BPX 'double helix' 1BPX 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 C DG 5 1_555 -0.739 -0.231 0.125 -3.348 -1.877 -1.068 1 T_DC1:DG5_D T 1 ? D 5 ? 19 1 1 A DC 2 1_555 C DG 4 1_555 0.881 -0.492 0.128 -3.440 -0.710 -0.959 2 T_DC2:DG4_D T 2 ? D 4 ? 19 1 1 A DG 3 1_555 C DC 3 1_555 -0.263 -0.243 -0.003 -1.799 -2.542 -1.916 3 T_DG3:DC3_D T 3 ? D 3 ? 19 1 1 A DA 4 1_555 C DT 2 1_555 0.220 -0.110 0.059 0.597 -0.563 -6.071 4 T_DA4:DT2_D T 4 ? D 2 ? 20 1 1 A DC 5 1_555 C DG 1 1_555 -0.019 -0.144 -0.132 3.975 -2.258 -0.827 5 T_DC5:DG1_D T 5 ? D 1 ? 19 1 1 A DG 7 1_555 B DC 10 1_555 -0.526 -0.319 -0.219 -4.657 -1.044 -6.447 6 T_DG7:DC10_P T 7 ? P 10 ? 19 1 1 A DC 8 1_555 B DG 9 1_555 -0.219 -0.032 -0.067 0.301 -1.106 -0.925 7 T_DC8:DG9_P T 8 ? P 9 ? 19 1 1 A DG 9 1_555 B DC 8 1_555 0.178 -0.182 0.084 2.495 -1.445 -1.631 8 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 A DC 10 1_555 B DG 7 1_555 0.311 -0.146 0.043 2.012 -0.322 -0.530 9 T_DC10:DG7_P T 10 ? P 7 ? 19 1 1 A DA 11 1_555 B DT 6 1_555 0.504 -0.113 0.062 2.067 -3.767 -3.475 10 T_DA11:DT6_P T 11 ? P 6 ? 20 1 1 A DT 12 1_555 B DA 5 1_555 -0.103 0.006 0.042 0.538 -1.964 -3.400 11 T_DT12:DA5_P T 12 ? P 5 ? 20 1 1 A DC 13 1_555 B DG 4 1_555 0.259 -0.178 0.022 -0.283 -1.523 -0.470 12 T_DC13:DG4_P T 13 ? P 4 ? 19 1 1 A DA 14 1_555 B DT 3 1_555 -0.399 -0.221 0.078 1.506 -1.157 -3.604 13 T_DA14:DT3_P T 14 ? P 3 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 -0.351 -0.191 -0.075 -1.236 -2.253 0.775 14 T_DG15:DC2_P T 15 ? P 2 ? 19 1 1 A DC 16 1_555 B DG 1 1_555 -0.087 -0.178 0.096 -0.937 -2.012 3.137 15 T_DC16:DG1_P T 16 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 C DG 5 1_555 A DC 2 1_555 C DG 4 1_555 0.817 0.341 3.394 1.729 0.901 46.280 0.354 -0.886 3.426 1.146 -2.199 46.319 1 TT_DC1DC2:DG4DG5_DD T 1 ? D 5 ? T 2 ? D 4 ? 1 A DC 2 1_555 C DG 4 1_555 A DG 3 1_555 C DC 3 1_555 -0.864 0.351 3.182 -2.020 2.084 26.348 0.222 1.358 3.256 4.553 4.415 26.504 2 TT_DC2DG3:DC3DG4_DD T 2 ? D 4 ? T 3 ? D 3 ? 1 A DG 3 1_555 C DC 3 1_555 A DA 4 1_555 C DT 2 1_555 -0.495 -0.113 3.408 -2.239 -0.875 37.013 -0.055 0.465 3.433 -1.377 3.522 37.088 3 TT_DG3DA4:DT2DC3_DD T 3 ? D 3 ? T 4 ? D 2 ? 1 A DA 4 1_555 C DT 2 1_555 A DC 5 1_555 C DG 1 1_555 0.933 -0.425 3.144 2.276 2.839 27.034 -1.586 -1.430 3.150 6.038 -4.842 27.273 4 TT_DA4DC5:DG1DT2_DD T 4 ? D 2 ? T 5 ? D 1 ? 1 A DG 7 1_555 B DC 10 1_555 A DC 8 1_555 B DG 9 1_555 0.423 -0.075 3.207 -2.491 -3.301 30.515 0.489 -1.272 3.154 -6.236 4.706 30.787 5 TT_DG7DC8:DG9DC10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 A DC 8 1_555 B DG 9 1_555 A DG 9 1_555 B DC 8 1_555 -0.637 0.685 3.465 -1.260 9.063 39.476 -0.112 0.767 3.548 13.203 1.836 40.482 6 TT_DC8DG9:DC8DG9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 A DG 9 1_555 B DC 8 1_555 A DC 10 1_555 B DG 7 1_555 0.179 -0.325 3.216 0.503 1.716 27.021 -1.120 -0.257 3.192 3.667 -1.074 27.079 7 TT_DG9DC10:DG7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 A DC 10 1_555 B DG 7 1_555 A DA 11 1_555 B DT 6 1_555 -0.071 -0.197 3.254 4.565 9.440 42.310 -1.167 0.532 3.119 12.844 -6.211 43.532 8 TT_DC10DA11:DT6DG7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 A DA 11 1_555 B DT 6 1_555 A DT 12 1_555 B DA 5 1_555 0.471 -0.582 3.344 1.006 -2.684 28.624 -0.551 -0.714 3.398 -5.411 -2.029 28.764 9 TT_DA11DT12:DA5DT6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 A DT 12 1_555 B DA 5 1_555 A DC 13 1_555 B DG 4 1_555 0.482 -0.477 2.988 4.142 1.619 39.072 -0.886 -0.265 3.000 2.411 -6.169 39.315 10 TT_DT12DC13:DG4DA5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 A DC 13 1_555 B DG 4 1_555 A DA 14 1_555 B DT 3 1_555 -0.741 -0.128 3.039 -0.773 10.240 34.494 -1.562 1.098 2.900 16.812 1.269 35.946 11 TT_DC13DA14:DT3DG4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 A DA 14 1_555 B DT 3 1_555 A DG 15 1_555 B DC 2 1_555 0.719 -0.487 3.470 -1.369 -0.899 30.496 -0.736 -1.653 3.447 -1.708 2.601 30.539 12 TT_DA14DG15:DC2DT3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 A DG 15 1_555 B DC 2 1_555 A DC 16 1_555 B DG 1 1_555 -0.048 -0.294 3.410 -3.224 4.674 35.881 -1.150 -0.390 3.338 7.528 5.193 36.313 13 TT_DG15DC16:DG1DC2_PP T 15 ? P 2 ? T 16 ? P 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'SODIUM ION' NA 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1BPY _pdbx_initial_refinement_model.details 'PDB ENTRY 1BPY' #