data_1BQJ # _entry.id 1BQJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BQJ pdb_00001bqj 10.2210/pdb1bqj/pdb RCSB UD0003 ? ? WWPDB D_1000172003 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BQJ _pdbx_database_status.recvd_initial_deposition_date 1998-08-17 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Weil, J.' 1 'Min, T.' 2 'Yang, C.' 3 'Wang, S.' 4 'Sutherland, C.' 5 'Sinha, N.' 6 'Kang, C.H.' 7 # _citation.id primary _citation.title 'Stabilization of the i-motif by intramolecular adenine-adenine-thymine base triple in the structure of d(ACCCT).' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 55 _citation.page_first 422 _citation.page_last 429 _citation.year 1999 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10089350 _citation.pdbx_database_id_DOI 10.1107/S0907444998012529 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Weil, J.' 1 ? primary 'Min, T.' 2 ? primary 'Yang, C.' 3 ? primary 'Wang, S.' 4 ? primary 'Sutherland, C.' 5 ? primary 'Sinha, N.' 6 ? primary 'Kang, C.' 7 ? # _cell.entry_id 1BQJ _cell.length_a 93.810 _cell.length_b 93.810 _cell.length_c 93.810 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BQJ _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting cubic _symmetry.Int_Tables_number 197 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*AP*CP*CP*CP*T)-3') ; 1439.988 4 ? ? ? ? 2 water nat water 18.015 51 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DC)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ACCCT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DC n 1 4 DC n 1 5 DT n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1BQJ _struct_ref.pdbx_db_accession 1BQJ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BQJ A 1 ? 5 ? 1BQJ 1 ? 5 ? 1 5 2 1 1BQJ B 1 ? 5 ? 1BQJ 6 ? 10 ? 6 10 3 1 1BQJ C 1 ? 5 ? 1BQJ 11 ? 15 ? 11 15 4 1 1BQJ D 1 ? 5 ? 1BQJ 16 ? 20 ? 16 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 1BQJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 12 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp 103.15 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1997-11-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BQJ _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 7136 _reflns.number_all ? _reflns.percent_possible_obs 98.500 _reflns.pdbx_Rmerge_I_obs 0.0350000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.500 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.200 _reflns_shell.d_res_low 2.300 _reflns_shell.percent_possible_all 96.30 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BQJ _refine.ls_number_reflns_obs 6914 _refine.ls_number_reflns_all 6914 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF 1000000.000 _refine.pdbx_data_cutoff_low_absF 0.0010 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.000 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 98.500 _refine.ls_R_factor_obs 0.1920000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1920000 _refine.ls_R_factor_R_free 0.2350000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 689 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 191D _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1BQJ _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 8.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 360 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 411 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 15.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 0.57 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 23.6 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.07 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1BQJ _struct.title 'CRYSTAL STRUCTURE OF D(ACCCT)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BQJ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'HUMAN TELOMERIC FRAGMENT, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DA 1 N6 ? ? A DA 1 B DA 6 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DA 1 N7 ? ? A DA 1 B DA 6 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog3 hydrog ? ? A DA 1 N6 ? ? ? 1_555 C DT 5 O2 ? ? A DA 1 C DT 15 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog4 hydrog ? ? A DA 1 N7 ? ? ? 1_555 C DT 5 N3 ? ? A DA 1 C DT 15 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DC 2 O2 ? ? A DC 2 B DC 7 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DC 2 N4 ? ? A DC 2 B DC 7 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DC 3 O2 ? ? A DC 3 B DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DC 3 N4 ? ? A DC 3 B DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DC 4 O2 ? ? A DC 4 B DC 9 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DC 4 N4 ? ? A DC 4 B DC 9 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog11 hydrog ? ? B DT 5 N3 ? ? ? 1_555 D DA 1 N1 ? ? B DT 10 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 5 O4 ? ? ? 1_555 D DA 1 N6 ? ? B DT 10 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DC 2 O2 ? ? C DC 12 D DC 17 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog14 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DC 2 N4 ? ? C DC 12 D DC 17 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog15 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DC 3 O2 ? ? C DC 13 D DC 18 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog16 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DC 3 N4 ? ? C DC 13 D DC 18 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog17 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DC 4 O2 ? ? C DC 14 D DC 19 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog18 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DC 4 N4 ? ? C DC 14 D DC 19 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1BQJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BQJ _atom_sites.fract_transf_matrix[1][1] 0.010660 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010660 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010660 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 ? ? ? A . n B 1 1 DA 1 6 6 DA A B . n B 1 2 DC 2 7 7 DC C B . n B 1 3 DC 3 8 8 DC C B . n B 1 4 DC 4 9 9 DC C B . n B 1 5 DT 5 10 10 DT T B . n C 1 1 DA 1 11 11 DA A C . n C 1 2 DC 2 12 12 DC C C . n C 1 3 DC 3 13 13 DC C C . n C 1 4 DC 4 14 14 DC C C . n C 1 5 DT 5 15 15 DT T C . n D 1 1 DA 1 16 16 DA A D . n D 1 2 DC 2 17 17 DC C D . n D 1 3 DC 3 18 18 DC C D . n D 1 4 DC 4 19 19 DC C D . n D 1 5 DT 5 20 20 DT T D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 32 32 HOH HOH A . E 2 HOH 2 36 36 HOH HOH A . E 2 HOH 3 40 40 HOH HOH A . E 2 HOH 4 48 48 HOH HOH A . E 2 HOH 5 50 50 HOH HOH A . E 2 HOH 6 57 57 HOH HOH A . E 2 HOH 7 58 58 HOH HOH A . E 2 HOH 8 62 62 HOH HOH A . E 2 HOH 9 64 64 HOH HOH A . E 2 HOH 10 66 66 HOH HOH A . E 2 HOH 11 68 68 HOH HOH A . E 2 HOH 12 73 73 HOH HOH A . E 2 HOH 13 76 76 HOH HOH A . F 2 HOH 1 22 22 HOH HOH B . F 2 HOH 2 23 23 HOH HOH B . F 2 HOH 3 27 27 HOH HOH B . F 2 HOH 4 31 31 HOH HOH B . F 2 HOH 5 41 41 HOH HOH B . F 2 HOH 6 42 42 HOH HOH B . F 2 HOH 7 43 43 HOH HOH B . F 2 HOH 8 44 44 HOH HOH B . F 2 HOH 9 49 49 HOH HOH B . F 2 HOH 10 51 51 HOH HOH B . F 2 HOH 11 54 54 HOH HOH B . F 2 HOH 12 55 55 HOH HOH B . F 2 HOH 13 56 56 HOH HOH B . F 2 HOH 14 69 69 HOH HOH B . F 2 HOH 15 70 70 HOH HOH B . F 2 HOH 16 71 71 HOH HOH B . F 2 HOH 17 80 80 HOH HOH B . F 2 HOH 18 82 82 HOH HOH B . G 2 HOH 1 21 21 HOH HOH C . G 2 HOH 2 25 25 HOH HOH C . G 2 HOH 3 28 28 HOH HOH C . G 2 HOH 4 30 30 HOH HOH C . G 2 HOH 5 37 37 HOH HOH C . G 2 HOH 6 38 38 HOH HOH C . G 2 HOH 7 39 39 HOH HOH C . G 2 HOH 8 46 46 HOH HOH C . G 2 HOH 9 47 47 HOH HOH C . G 2 HOH 10 53 53 HOH HOH C . G 2 HOH 11 74 74 HOH HOH C . G 2 HOH 12 77 77 HOH HOH C . G 2 HOH 13 79 79 HOH HOH C . H 2 HOH 1 26 26 HOH HOH D . H 2 HOH 2 33 33 HOH HOH D . H 2 HOH 3 45 45 HOH HOH D . H 2 HOH 4 63 63 HOH HOH D . H 2 HOH 5 67 67 HOH HOH D . H 2 HOH 6 72 72 HOH HOH D . H 2 HOH 7 81 81 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-03-18 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id DT _pdbx_unobs_or_zero_occ_residues.auth_seq_id 5 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id DT _pdbx_unobs_or_zero_occ_residues.label_seq_id 5 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BQJ 'double helix' 1BQJ 'parallel strands' 1BQJ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DA 1 1_555 3.982 1.076 0.264 -3.799 11.162 -106.411 1 A_DA1:DA6_B A 1 ? B 6 ? 5 4 1 A DC 2 1_555 B DC 2 1_555 -1.874 -1.090 -0.123 8.401 -13.773 -178.064 2 A_DC2:DC7_B A 2 ? B 7 ? 15 2 1 D DC 4 1_555 C DC 4 1_555 -2.035 -1.272 -0.029 3.988 0.730 -176.420 3 D_DC19:DC14_C D 19 ? C 14 ? 15 2 1 A DC 3 1_555 B DC 3 1_555 -1.987 -1.166 0.091 2.598 0.166 -179.644 4 A_DC3:DC8_B A 3 ? B 8 ? 15 2 1 D DC 3 1_555 C DC 3 1_555 2.177 1.372 -0.039 -4.549 1.377 179.794 5 D_DC18:DC13_C D 18 ? C 13 ? 15 2 1 A DC 4 1_555 B DC 4 1_555 2.052 1.263 0.109 -0.240 2.625 177.864 6 A_DC4:DC9_B A 4 ? B 9 ? 15 2 1 D DC 2 1_555 C DC 2 1_555 -1.992 -1.158 -0.149 11.007 -6.383 -176.088 7 D_DC17:DC12_C D 17 ? C 12 ? 15 2 1 B DT 5 1_555 D DA 1 1_555 -0.017 -0.103 -0.058 12.341 2.091 3.230 8 B_DT10:DA16_D B 10 ? D 16 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DA 1 1_555 A DC 2 1_555 B DC 2 1_555 4.303 -2.652 2.897 3.711 1.299 85.632 -1.976 -3.087 3.013 0.955 -2.729 85.704 1 AA_DA1DC2:DC7DA6_BB A 1 ? B 6 ? A 2 ? B 7 ? 1 A DC 2 1_555 B DC 2 1_555 D DC 4 1_555 C DC 4 1_555 2.144 -2.773 0.575 -128.516 -121.146 81.179 -1.196 -1.274 0.634 -60.979 64.688 177.429 2 AD_DC2DC19:DC14DC7_CB A 2 ? B 7 ? D 19 ? C 14 ? 1 D DC 4 1_555 C DC 4 1_555 A DC 3 1_555 B DC 3 1_555 -1.372 2.842 0.000 -148.276 -96.386 13.352 1.325 0.834 -0.396 -48.952 75.305 176.872 3 DA_DC19DC3:DC8DC14_BC D 19 ? C 14 ? A 3 ? B 8 ? 1 A DC 3 1_555 B DC 3 1_555 D DC 3 1_555 C DC 3 1_555 2.155 2.272 -0.004 120.171 -131.578 146.294 1.132 -1.081 -0.069 -65.817 -60.111 179.477 4 AD_DC3DC18:DC13DC8_CB A 3 ? B 8 ? D 18 ? C 13 ? 1 D DC 3 1_555 C DC 3 1_555 A DC 4 1_555 B DC 4 1_555 1.451 -2.627 0.018 147.246 96.768 -20.106 1.257 0.813 0.230 -49.246 74.935 -176.256 5 DA_DC18DC4:DC9DC13_BC D 18 ? C 13 ? A 4 ? B 9 ? 1 A DC 4 1_555 B DC 4 1_555 D DC 2 1_555 C DC 2 1_555 2.459 2.330 -0.095 115.847 -132.166 -60.157 -1.172 1.225 0.066 66.880 58.622 -176.323 6 AD_DC4DC17:DC12DC9_CB A 4 ? B 9 ? D 17 ? C 12 ? 1 D DC 2 1_555 C DC 2 1_555 B DT 5 1_555 D DA 1 1_555 -1.628 -0.882 -3.214 10.794 5.454 143.216 -0.437 0.804 -3.277 2.873 -5.685 143.428 7 DB_DC17DT10:DA16DC12_DC D 17 ? C 12 ? B 10 ? D 16 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 191D _pdbx_initial_refinement_model.details ? #