HEADER HYDROLASE 01-SEP-98 1BS4 TITLE PEPTIDE DEFORMYLASE AS ZN2+ CONTAINING FORM (NATIVE) IN COMPLEX WITH TITLE 2 INHIBITOR POLYETHYLENE GLYCOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PEPTIDE DEFORMYLASE); COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PDF; COMPND 5 EC: 3.5.1.31; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PDF PROTEIN FROM ESCHERICHIA COLI IS CRYSTALLIZED AS COMPND 8 ZN2+ CONTAINING FORM, COCRYSTALLIZED WITH INHIBITOR POLYETHYLENE COMPND 9 GLYCOL (PEG) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: JM109; SOURCE 5 CELLULAR_LOCATION: CYTOPLASMA; SOURCE 6 GENE: DEF; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PKK223-3 (PHARMACIA); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: P925C; SOURCE 13 EXPRESSION_SYSTEM_GENE: DEF KEYWDS COMPLEX(ENZYME-INHIBITOR), HYDROLASE, IRON METALLOPROTEASE, PROTEIN KEYWDS 2 SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.BECKER,I.SCHLICHTING,W.KABSCH,D.GROCHE,S.SCHULTZ,A.F.V.WAGNER REVDAT 3 09-AUG-23 1BS4 1 REMARK LINK REVDAT 2 24-FEB-09 1BS4 1 VERSN REVDAT 1 27-AUG-99 1BS4 0 JRNL AUTH A.BECKER,I.SCHLICHTING,W.KABSCH,D.GROCHE,S.SCHULTZ, JRNL AUTH 2 A.F.WAGNER JRNL TITL IRON CENTER, SUBSTRATE RECOGNITION AND MECHANISM OF PEPTIDE JRNL TITL 2 DEFORMYLASE. JRNL REF NAT.STRUCT.BIOL. V. 5 1053 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9846875 JRNL DOI 10.1038/4162 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.BECKER,I.SCHLICHTING,W.KABSCH,S.SCHULTZ,A.F.V.WAGNER REMARK 1 TITL STRUCTURE OF PEPTIDE DEFORMYLASE AND IDENTIFICATION OF THE REMARK 1 TITL 2 SUBSTRATE BINDING SITE REMARK 1 REF J.BIOL.CHEM. V. 273 11413 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.GROCHE,A.BECKER,I.SCHLICHTING,W.KABSCH,S.SCHULTZ, REMARK 1 AUTH 2 A.F.V.WAGNER REMARK 1 TITL ISOLATION AND CRYSTALLIZATION OF FUNCTIONALLY COMPETENT REMARK 1 TITL 2 ESCHERICHIA COLI PEPTIDE DEFORMYLASE FORMS CONTAINING EITHER REMARK 1 TITL 3 IRON OR NICKEL IN THE ACTIVE SITE REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 246 342 1998 REMARK 1 REFN ISSN 0006-291X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 48788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4916 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6910 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 755 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.910 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.050 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.730 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.530 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PDFZNPEG.PARM REMARK 3 PARAMETER FILE 2 : PDFZNPEG.SCATTER REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PDFZNPEG.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1BS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000007205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-97 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : FRANKS DOUBLE-MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51676 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.16200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: 1ICJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: REFERENCE: REMARK 280 D.GROCHE,A.BECKER,I.SCHLICHTING,W.KABSCH, S.SCHULTZ,A.F.V.WAGNER REMARK 280 ( 1998) BIOCHEM.BIOPHYS.RES.COMM. 246, 342, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 43.90 -96.34 REMARK 500 ASP A 67 26.32 -141.59 REMARK 500 CYS A 90 134.74 -170.69 REMARK 500 PRO B 509 44.33 -95.55 REMARK 500 ALA B 666 40.47 -97.74 REMARK 500 PRO C1009 44.48 -97.49 REMARK 500 HIS C1054 59.40 -97.30 REMARK 500 ASP C1067 26.91 -140.28 REMARK 500 LEU C1164 59.15 -94.90 REMARK 500 LYS C1165 -36.41 -147.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 14 0.08 SIDE CHAIN REMARK 500 ARG B 556 0.16 SIDE CHAIN REMARK 500 ARG C1012 0.09 SIDE CHAIN REMARK 500 ARG C1029 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 583 11.26 REMARK 500 GLU C1083 10.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 90 SG REMARK 620 2 HIS A 132 NE2 117.9 REMARK 620 3 HIS A 136 NE2 102.2 104.0 REMARK 620 4 HOH A8068 O 125.2 100.8 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 590 SG REMARK 620 2 HIS B 632 NE2 116.9 REMARK 620 3 HIS B 636 NE2 105.3 104.1 REMARK 620 4 HOH B9254 O 124.3 100.5 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C2003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1090 SG REMARK 620 2 HIS C1132 NE2 116.2 REMARK 620 3 HIS C1136 NE2 103.4 106.0 REMARK 620 4 HOH C9255 O 125.5 101.4 102.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZNA REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ONE PEG MOLECULE IS LOCATED IN ACTIVE SITE NEAR REMARK 800 ZINC ION REMARK 800 REMARK 800 SITE_IDENTIFIER: ZNB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ONE PEG MOLECULE IS LOCATED IN ACTIVE SITE NEAR REMARK 800 ZINC ION REMARK 800 REMARK 800 SITE_IDENTIFIER: ZNC REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ONE PEG MOLECULE IS LOCATED IN ACTIVE SITE NEAR REMARK 800 ZINC ION REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE C 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BS5 RELATED DB: PDB REMARK 900 RELATED ID: 1BS6 RELATED DB: PDB REMARK 900 RELATED ID: 1BS7 RELATED DB: PDB REMARK 900 RELATED ID: 1BS8 RELATED DB: PDB REMARK 900 RELATED ID: 1BSZ RELATED DB: PDB DBREF 1BS4 A 1 168 UNP P0A6K3 DEF_ECOLI 1 168 DBREF 1BS4 B 501 668 UNP P0A6K3 DEF_ECOLI 1 168 DBREF 1BS4 C 1001 1168 UNP P0A6K3 DEF_ECOLI 1 168 SEQRES 1 A 168 SER VAL LEU GLN VAL LEU HIS ILE PRO ASP GLU ARG LEU SEQRES 2 A 168 ARG LYS VAL ALA LYS PRO VAL GLU GLU VAL ASN ALA GLU SEQRES 3 A 168 ILE GLN ARG ILE VAL ASP ASP MET PHE GLU THR MET TYR SEQRES 4 A 168 ALA GLU GLU GLY ILE GLY LEU ALA ALA THR GLN VAL ASP SEQRES 5 A 168 ILE HIS GLN ARG ILE ILE VAL ILE ASP VAL SER GLU ASN SEQRES 6 A 168 ARG ASP GLU ARG LEU VAL LEU ILE ASN PRO GLU LEU LEU SEQRES 7 A 168 GLU LYS SER GLY GLU THR GLY ILE GLU GLU GLY CYS LEU SEQRES 8 A 168 SER ILE PRO GLU GLN ARG ALA LEU VAL PRO ARG ALA GLU SEQRES 9 A 168 LYS VAL LYS ILE ARG ALA LEU ASP ARG ASP GLY LYS PRO SEQRES 10 A 168 PHE GLU LEU GLU ALA ASP GLY LEU LEU ALA ILE CYS ILE SEQRES 11 A 168 GLN HIS GLU MET ASP HIS LEU VAL GLY LYS LEU PHE MET SEQRES 12 A 168 ASP TYR LEU SER PRO LEU LYS GLN GLN ARG ILE ARG GLN SEQRES 13 A 168 LYS VAL GLU LYS LEU ASP ARG LEU LYS ALA ARG ALA SEQRES 1 B 168 SER VAL LEU GLN VAL LEU HIS ILE PRO ASP GLU ARG LEU SEQRES 2 B 168 ARG LYS VAL ALA LYS PRO VAL GLU GLU VAL ASN ALA GLU SEQRES 3 B 168 ILE GLN ARG ILE VAL ASP ASP MET PHE GLU THR MET TYR SEQRES 4 B 168 ALA GLU GLU GLY ILE GLY LEU ALA ALA THR GLN VAL ASP SEQRES 5 B 168 ILE HIS GLN ARG ILE ILE VAL ILE ASP VAL SER GLU ASN SEQRES 6 B 168 ARG ASP GLU ARG LEU VAL LEU ILE ASN PRO GLU LEU LEU SEQRES 7 B 168 GLU LYS SER GLY GLU THR GLY ILE GLU GLU GLY CYS LEU SEQRES 8 B 168 SER ILE PRO GLU GLN ARG ALA LEU VAL PRO ARG ALA GLU SEQRES 9 B 168 LYS VAL LYS ILE ARG ALA LEU ASP ARG ASP GLY LYS PRO SEQRES 10 B 168 PHE GLU LEU GLU ALA ASP GLY LEU LEU ALA ILE CYS ILE SEQRES 11 B 168 GLN HIS GLU MET ASP HIS LEU VAL GLY LYS LEU PHE MET SEQRES 12 B 168 ASP TYR LEU SER PRO LEU LYS GLN GLN ARG ILE ARG GLN SEQRES 13 B 168 LYS VAL GLU LYS LEU ASP ARG LEU LYS ALA ARG ALA SEQRES 1 C 168 SER VAL LEU GLN VAL LEU HIS ILE PRO ASP GLU ARG LEU SEQRES 2 C 168 ARG LYS VAL ALA LYS PRO VAL GLU GLU VAL ASN ALA GLU SEQRES 3 C 168 ILE GLN ARG ILE VAL ASP ASP MET PHE GLU THR MET TYR SEQRES 4 C 168 ALA GLU GLU GLY ILE GLY LEU ALA ALA THR GLN VAL ASP SEQRES 5 C 168 ILE HIS GLN ARG ILE ILE VAL ILE ASP VAL SER GLU ASN SEQRES 6 C 168 ARG ASP GLU ARG LEU VAL LEU ILE ASN PRO GLU LEU LEU SEQRES 7 C 168 GLU LYS SER GLY GLU THR GLY ILE GLU GLU GLY CYS LEU SEQRES 8 C 168 SER ILE PRO GLU GLN ARG ALA LEU VAL PRO ARG ALA GLU SEQRES 9 C 168 LYS VAL LYS ILE ARG ALA LEU ASP ARG ASP GLY LYS PRO SEQRES 10 C 168 PHE GLU LEU GLU ALA ASP GLY LEU LEU ALA ILE CYS ILE SEQRES 11 C 168 GLN HIS GLU MET ASP HIS LEU VAL GLY LYS LEU PHE MET SEQRES 12 C 168 ASP TYR LEU SER PRO LEU LYS GLN GLN ARG ILE ARG GLN SEQRES 13 C 168 LYS VAL GLU LYS LEU ASP ARG LEU LYS ALA ARG ALA HET ZN A2001 1 HET 2PE A 170 28 HET SO4 B3001 5 HET ZN B2002 1 HET 2PE B 2 28 HET SO4 C3002 5 HET ZN C2003 1 HET 2PE C 3 28 HETNAM ZN ZINC ION HETNAM 2PE NONAETHYLENE GLYCOL HETNAM SO4 SULFATE ION FORMUL 4 ZN 3(ZN 2+) FORMUL 5 2PE 3(C18 H38 O10) FORMUL 6 SO4 2(O4 S 2-) FORMUL 12 HOH *211(H2 O) HELIX 1 1 GLU A 11 ARG A 14 5 4 HELIX 2 2 ALA A 25 ALA A 40 1 16 HELIX 3 3 ALA A 48 VAL A 51 5 4 HELIX 4 4 GLY A 124 VAL A 138 1 15 HELIX 5 5 PHE A 142 TYR A 145 5 4 HELIX 6 6 PRO A 148 LYS A 165 1 18 HELIX 7 7 GLU B 511 ARG B 514 5 4 HELIX 8 8 ALA B 525 ALA B 540 1 16 HELIX 9 9 ALA B 548 VAL B 551 5 4 HELIX 10 10 GLY B 624 VAL B 638 1 15 HELIX 11 11 PHE B 642 TYR B 645 5 4 HELIX 12 12 PRO B 648 LYS B 665 1 18 HELIX 13 13 GLU C 1011 ARG C 1014 5 4 HELIX 14 14 ALA C 1025 GLU C 1041 1 17 HELIX 15 15 ALA C 1048 VAL C 1051 5 4 HELIX 16 16 GLY C 1124 VAL C 1138 1 15 HELIX 17 17 PHE C 1142 TYR C 1145 5 4 HELIX 18 18 PRO C 1148 LYS C 1165 1 18 SHEET 1 A 3 GLY A 45 ALA A 47 0 SHEET 2 A 3 ILE A 57 ILE A 60 -1 N VAL A 59 O LEU A 46 SHEET 3 A 3 LEU A 70 ILE A 73 -1 N LEU A 72 O ILE A 58 SHEET 1 B 3 PRO A 117 ASP A 123 0 SHEET 2 B 3 LYS A 105 LEU A 111 -1 N ALA A 110 O PHE A 118 SHEET 3 B 3 GLU A 76 SER A 81 -1 N SER A 81 O LYS A 105 SHEET 1 C 3 GLY B 545 ALA B 547 0 SHEET 2 C 3 ILE B 557 ILE B 560 -1 N VAL B 559 O LEU B 546 SHEET 3 C 3 LEU B 570 ILE B 573 -1 N LEU B 572 O ILE B 558 SHEET 1 D 2 THR B 584 GLU B 588 0 SHEET 2 D 2 ALA B 598 ARG B 602 -1 N ARG B 602 O THR B 584 SHEET 1 E 3 PRO B 617 ALA B 622 0 SHEET 2 E 3 LYS B 605 LEU B 611 -1 N ALA B 610 O PHE B 618 SHEET 3 E 3 GLU B 576 SER B 581 -1 N SER B 581 O LYS B 605 SHEET 1 F 3 GLY C1045 ALA C1047 0 SHEET 2 F 3 ILE C1057 ILE C1060 -1 N VAL C1059 O LEU C1046 SHEET 3 F 3 LEU C1070 ILE C1073 -1 N LEU C1072 O ILE C1058 SHEET 1 G 3 PRO C1117 ASP C1123 0 SHEET 2 G 3 LYS C1105 LEU C1111 -1 N ALA C1110 O PHE C1118 SHEET 3 G 3 GLU C1076 SER C1081 -1 N SER C1081 O LYS C1105 LINK SG CYS A 90 ZN ZN A2001 1555 1555 2.26 LINK NE2 HIS A 132 ZN ZN A2001 1555 1555 2.05 LINK NE2 HIS A 136 ZN ZN A2001 1555 1555 2.02 LINK ZN ZN A2001 O HOH A8068 1555 1555 1.82 LINK SG CYS B 590 ZN ZN B2002 1555 1555 2.28 LINK NE2 HIS B 632 ZN ZN B2002 1555 1555 2.03 LINK NE2 HIS B 636 ZN ZN B2002 1555 1555 2.05 LINK ZN ZN B2002 O HOH B9254 1555 1555 1.89 LINK SG CYS C1090 ZN ZN C2003 1555 1555 2.25 LINK NE2 HIS C1132 ZN ZN C2003 1555 1555 2.08 LINK NE2 HIS C1136 ZN ZN C2003 1555 1555 2.08 LINK ZN ZN C2003 O HOH C9255 1555 1555 2.02 CISPEP 1 ILE A 8 PRO A 9 0 5.37 CISPEP 2 ILE B 508 PRO B 509 0 4.39 CISPEP 3 ILE C 1008 PRO C 1009 0 7.17 SITE 1 ZNA 3 CYS A 90 HIS A 132 HIS A 136 SITE 1 ZNB 3 CYS B 590 HIS B 632 HIS B 636 SITE 1 ZNC 3 CYS C1090 HIS C1132 HIS C1136 SITE 1 AC1 5 LYS B 518 HIS B 554 GLN B 555 HOH B2064 SITE 2 AC1 5 ARG C1029 SITE 1 AC2 5 ARG B 529 HOH C 137 ILE C1053 HIS C1054 SITE 2 AC2 5 GLN C1055 SITE 1 AC3 5 GLN A 50 CYS A 90 HIS A 132 HIS A 136 SITE 2 AC3 5 HOH A8068 SITE 1 AC4 4 CYS B 590 HIS B 632 HIS B 636 HOH B9254 SITE 1 AC5 4 CYS C1090 HIS C1132 HIS C1136 HOH C9255 SITE 1 AC6 14 GLU A 41 GLU A 42 GLY A 43 ILE A 44 SITE 2 AC6 14 GLY A 45 GLU A 88 GLY A 89 LEU A 91 SITE 3 AC6 14 PRO A 94 GLU A 95 ARG A 97 HIS A 132 SITE 4 AC6 14 GLU A 133 LEU B 649 SITE 1 AC7 12 GLU B 541 GLU B 542 GLY B 543 ILE B 544 SITE 2 AC7 12 GLU B 587 GLY B 589 LEU B 591 ARG B 597 SITE 3 AC7 12 CYS B 629 GLU B 633 HOH B9094 LYS C1018 SITE 1 AC8 16 HOH C 210 GLU C1042 GLY C1043 ILE C1044 SITE 2 AC8 16 GLY C1045 GLU C1087 GLU C1088 GLY C1089 SITE 3 AC8 16 CYS C1090 LEU C1091 PRO C1094 GLU C1095 SITE 4 AC8 16 ARG C1097 CYS C1129 HIS C1132 GLU C1133 CRYST1 140.700 63.300 86.800 90.00 120.60 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007107 0.000000 0.004203 0.00000 SCALE2 0.000000 0.015798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013385 0.00000