HEADER HYDROLASE(O-GLYCOSYL) 18-FEB-93 1BTC TITLE THREE-DIMENSIONAL STRUCTURE OF SOYBEAN BETA-AMYLASE DETERMINED AT 3.0 TITLE 2 ANGSTROMS RESOLUTION: PRELIMINARY CHAIN TRACING OF THE COMPLEX WITH TITLE 3 ALPHA-CYCLODEXTRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847 KEYWDS HYDROLASE(O-GLYCOSYL) EXPDTA X-RAY DIFFRACTION AUTHOR B.MIKAMI,E.J.HEHRE,M.SATO,Y.KATSUBE,M.HIROSE,Y.MORITA,J.C.SACCHETTINI REVDAT 7 29-JUL-20 1BTC 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 29-NOV-17 1BTC 1 HELIX REVDAT 5 07-APR-10 1BTC 1 JRNL REVDAT 4 25-AUG-09 1BTC 1 SOURCE REVDAT 3 24-FEB-09 1BTC 1 VERSN REVDAT 2 01-APR-03 1BTC 1 JRNL REVDAT 1 31-OCT-93 1BTC 0 JRNL AUTH B.MIKAMI,E.J.HEHRE,M.SATO,Y.KATSUBE,M.HIROSE,Y.MORITA, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL THE 2.0-A RESOLUTION STRUCTURE OF SOYBEAN BETA-AMYLASE JRNL TITL 2 COMPLEXED WITH ALPHA-CYCLODEXTRIN. JRNL REF BIOCHEMISTRY V. 32 6836 1993 JRNL REFN ISSN 0006-2960 JRNL PMID 8334116 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.MIKAMI,M.SATO,T.SHIBATA,M.HIROSE,S.AIBARA,Y.KATSUBE, REMARK 1 AUTH 2 Y.MORITA REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF SOYBEAN BETA-AMYLASE REMARK 1 TITL 2 DETERMINED AT 3.0 A RESOLUTION: PRELIMINARY CHAIN TRACING OF REMARK 1 TITL 3 THE COMPLEX WITH ALPHA-CYCLODEXTRIN. REMARK 1 REF J.BIOCHEM.(TOKYO) V. 112 541 1992 REMARK 1 REFN ISSN 0021-924X REMARK 1 PMID 1491009 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.MIKAMI,T.SHIBATA,M.HIROSE,S.AIBARA,M.SATO,Y.KATSUBE, REMARK 1 AUTH 2 Y.MORITA REMARK 1 TITL X-RAY CRYSTAL STRUCTURE OF SOYBEAN BETA-AMYLASE REMARK 1 REF DENPUN KAGAKU V. 38 147 1991 REMARK 1 REFN ISSN 0021-5406 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.MORITA,S.AIBARA,H.YAMASHITA,F.YAGI,T.SUGANUMA,K.HIROMI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY INVESTIGATION OF REMARK 1 TITL 2 SOYBEAN BETA-AMYLASE REMARK 1 REF J.BIOCHEM.(TOKYO) V. 77 343 1975 REMARK 1 REFN ISSN 0021-924X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.080 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.10000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.20000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.20000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 93 NE2 HIS A 93 CD2 -0.072 REMARK 500 HIS A 119 NE2 HIS A 119 CD2 -0.071 REMARK 500 HIS A 146 NE2 HIS A 146 CD2 -0.071 REMARK 500 HIS A 273 NE2 HIS A 273 CD2 -0.069 REMARK 500 HIS A 300 NE2 HIS A 300 CD2 -0.075 REMARK 500 HIS A 308 NE2 HIS A 308 CD2 -0.081 REMARK 500 HIS A 335 NE2 HIS A 335 CD2 -0.077 REMARK 500 HIS A 456 NE2 HIS A 456 CD2 -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 55 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 55 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP A 55 CG - CD2 - CE3 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 56 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 56 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 69 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 69 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU A 86 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 TRP A 110 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 110 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TRP A 198 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 198 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 202 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TRP A 229 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 229 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 265 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 265 CG - CD1 - NE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 265 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 301 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 301 CB - CG - CD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 TRP A 301 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP A 301 CG - CD2 - CE3 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 302 CD1 - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TRP A 302 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 330 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 330 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 VAL A 363 CG1 - CB - CG2 ANGL. DEV. = -10.5 DEGREES REMARK 500 TRP A 371 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 371 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 371 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 385 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 385 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU A 419 CA - C - N ANGL. DEV. = -19.1 DEGREES REMARK 500 LEU A 419 O - C - N ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 420 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 420 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 ILE A 458 CA - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 TRP A 485 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 485 CB - CG - CD1 ANGL. DEV. = -9.9 DEGREES REMARK 500 TRP A 485 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 485 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 VAL A 493 CA - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 6 147.63 168.17 REMARK 500 ASP A 31 78.41 -150.47 REMARK 500 VAL A 99 124.85 -39.83 REMARK 500 TYR A 134 145.04 -174.12 REMARK 500 PHE A 145 78.55 -114.70 REMARK 500 PRO A 201 55.46 -106.86 REMARK 500 PRO A 232 125.59 -38.66 REMARK 500 ASN A 251 27.74 47.30 REMARK 500 HIS A 308 52.05 39.10 REMARK 500 LEU A 344 -5.85 -145.89 REMARK 500 ARG A 420 138.47 52.84 REMARK 500 ASP A 494 99.38 65.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET PRESENTED AS *S1* ON SHEET RECORDS BELOW IS REMARK 700 ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS REMARK 700 REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST REMARK 700 AND LAST STRANDS ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: S1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES BINDING GLC A 496 REMARK 800 REMARK 800 SITE_IDENTIFIER: S2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES BINDING GLC A 497 REMARK 800 REMARK 800 SITE_IDENTIFIER: S3 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES BINDING GLC A 498 REMARK 800 REMARK 800 SITE_IDENTIFIER: S4 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES BINDING GLC A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: S5 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES BINDING GLC A 500 DBREF 1BTC A 5 495 UNP P10538 AMYB_SOYBN 5 495 SEQRES 1 A 491 SER ASN MET LEU LEU ASN TYR VAL PRO VAL TYR VAL MET SEQRES 2 A 491 LEU PRO LEU GLY VAL VAL ASN VAL ASP ASN VAL PHE GLU SEQRES 3 A 491 ASP PRO ASP GLY LEU LYS GLU GLN LEU LEU GLN LEU ARG SEQRES 4 A 491 ALA ALA GLY VAL ASP GLY VAL MET VAL ASP VAL TRP TRP SEQRES 5 A 491 GLY ILE ILE GLU LEU LYS GLY PRO LYS GLN TYR ASP TRP SEQRES 6 A 491 ARG ALA TYR ARG SER LEU PHE GLN LEU VAL GLN GLU CYS SEQRES 7 A 491 GLY LEU THR LEU GLN ALA ILE MET SER PHE HIS GLN CYS SEQRES 8 A 491 GLY GLY ASN VAL GLY ASP ILE VAL ASN ILE PRO ILE PRO SEQRES 9 A 491 GLN TRP VAL LEU ASP ILE GLY GLU SER ASN HIS ASP ILE SEQRES 10 A 491 PHE TYR THR ASN ARG SER GLY THR ARG ASN LYS GLU TYR SEQRES 11 A 491 LEU THR VAL GLY VAL ASP ASN GLU PRO ILE PHE HIS GLY SEQRES 12 A 491 ARG THR ALA ILE GLU ILE TYR SER ASP TYR MET LYS SER SEQRES 13 A 491 PHE ARG GLU ASN MET SER ASP PHE LEU GLU SER GLY LEU SEQRES 14 A 491 ILE ILE ASP ILE GLU VAL GLY LEU GLY PRO ALA GLY GLU SEQRES 15 A 491 LEU ARG TYR PRO SER TYR PRO GLN SER GLN GLY TRP GLU SEQRES 16 A 491 PHE PRO ARG ILE GLY GLU PHE GLN CYS TYR ASP LYS TYR SEQRES 17 A 491 LEU LYS ALA ASP PHE LYS ALA ALA VAL ALA ARG ALA GLY SEQRES 18 A 491 HIS PRO GLU TRP GLU LEU PRO ASP ASP ALA GLY LYS TYR SEQRES 19 A 491 ASN ASP VAL PRO GLU SER THR GLY PHE PHE LYS SER ASN SEQRES 20 A 491 GLY THR TYR VAL THR GLU LYS GLY LYS PHE PHE LEU THR SEQRES 21 A 491 TRP TYR SER ASN LYS LEU LEU ASN HIS GLY ASP GLN ILE SEQRES 22 A 491 LEU ASP GLU ALA ASN LYS ALA PHE LEU GLY CYS LYS VAL SEQRES 23 A 491 LYS LEU ALA ILE LYS VAL SER GLY ILE HIS TRP TRP TYR SEQRES 24 A 491 LYS VAL GLU ASN HIS ALA ALA GLU LEU THR ALA GLY TYR SEQRES 25 A 491 TYR ASN LEU ASN ASP ARG ASP GLY TYR ARG PRO ILE ALA SEQRES 26 A 491 ARG MET LEU SER ARG HIS HIS ALA ILE LEU ASN PHE THR SEQRES 27 A 491 CYS LEU GLU MET ARG ASP SER GLU GLN PRO SER ASP ALA SEQRES 28 A 491 LYS SER GLY PRO GLN GLU LEU VAL GLN GLN VAL LEU SER SEQRES 29 A 491 GLY GLY TRP ARG GLU ASP ILE ARG VAL ALA GLY GLU ASN SEQRES 30 A 491 ALA LEU PRO ARG TYR ASP ALA THR ALA TYR ASN GLN ILE SEQRES 31 A 491 ILE LEU ASN ALA LYS PRO GLN GLY VAL ASN ASN ASN GLY SEQRES 32 A 491 PRO PRO LYS LEU SER MET PHE GLY VAL THR TYR LEU ARG SEQRES 33 A 491 LEU SER ASP ASP LEU LEU GLN LYS SER ASN PHE ASN ILE SEQRES 34 A 491 PHE LYS LYS PHE VAL LEU LYS MET HIS ALA ASP GLN ASP SEQRES 35 A 491 TYR CYS ALA ASN PRO GLN LYS TYR ASN HIS ALA ILE THR SEQRES 36 A 491 PRO LEU LYS PRO SER ALA PRO LYS ILE PRO ILE GLU VAL SEQRES 37 A 491 LEU LEU GLU ALA THR LYS PRO THR LEU PRO PHE PRO TRP SEQRES 38 A 491 LEU PRO GLU THR ASP MET LYS VAL ASP GLY HET GLC B 1 11 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HET GLC B 5 11 HET GLC B 6 11 HET SO4 A 1 5 HET BME A 502 4 HET BME A 503 4 HET BME A 504 4 HET BME A 505 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 GLC 6(C6 H12 O6) FORMUL 3 SO4 O4 S 2- FORMUL 4 BME 4(C2 H6 O S) FORMUL 8 HOH *318(H2 O) HELIX 1 H1 MET A 7 ASN A 10 5 4 HELIX 2 H2 PRO A 32 ALA A 45 1 14 HELIX 3 H3 TRP A 56 ILE A 59 1 4 HELIX 4 H4 ARG A 70 GLU A 81 1 12 HELIX 5 H5 GLN A 109 SER A 117 1 9 HELIX 6 H6 ALA A 150 ASN A 164 1 15 HELIX 7 H7 SER A 166 GLU A 170 1 5 HELIX 8 H8 LYS A 211 ALA A 224 1 14 HELIX 9 H9 LYS A 258 ALA A 284 1 27 HELIX 10 H10 ALA A 309 THR A 313 1 5 HELIX 11 H11 TYR A 325 ARG A 334 1 10 HELIX 12 H12 PRO A 359 GLU A 373 1 15 HELIX 13 H13 ASP A 387 LYS A 399 1 13 HELIX 14 H14 GLN A 427 HIS A 442 1 16 HELIX 15 H15 PRO A 451 LYS A 453 5 3 HELIX 16 H16 PRO A 469 GLU A 475 1 7 SHEET 1 S1 9 PRO A 13 LEU A 20 0 SHEET 2 S1 9 GLY A 49 TRP A 55 1 SHEET 3 S1 9 THR A 85 SER A 91 1 SHEET 4 S1 9 ASP A 176 LEU A 181 1 SHEET 5 S1 9 VAL A 290 VAL A 296 1 SHEET 6 S1 9 ALA A 337 CYS A 343 1 SHEET 7 S1 9 ILE A 375 ASN A 381 1 SHEET 8 S1 9 GLY A 415 LEU A 419 1 SHEET 9 S1 9 PRO A 13 LEU A 20 1 SHEET 1 S2 2 CYS A 95 CYS A 95 0 SHEET 2 S2 2 ILE A 105 ILE A 105 -1 SHEET 1 S3 2 TYR A 123 ASN A 125 0 SHEET 2 S3 2 GLY A 128 ASN A 131 -1 LINK SG CYS A 95 S2 BME A 502 1555 1555 2.06 LINK SG CYS A 288 S2 BME A 503 1555 1555 2.01 LINK SG CYS A 343 S2 BME A 504 1555 1555 2.03 LINK SG CYS A 448 S2 BME A 505 1555 1555 2.02 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.43 LINK C1 GLC B 1 O4 GLC B 6 1555 1555 1.45 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.42 LINK O4 GLC B 3 C1 GLC B 4 1555 1555 1.40 LINK O4 GLC B 4 C1 GLC B 5 1555 1555 1.43 LINK O4 GLC B 5 C1 GLC B 6 1555 1555 1.44 CISPEP 1 PHE A 200 PRO A 201 0 8.85 SITE 1 S1 2 LEU A 383 PRO A 384 SITE 1 S2 2 ALA A 382 LEU A 383 SITE 1 S3 2 TRP A 301 ALA A 382 SITE 1 S4 6 TRP A 198 PHE A 200 HIS A 300 TRP A 301 SITE 2 S4 6 MET A 346 LEU A 383 SITE 1 S5 1 LEU A 383 CRYST1 86.100 86.100 144.300 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011614 0.006706 0.000000 0.00000 SCALE2 0.000000 0.013411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006930 0.00000