data_1BUU # _entry.id 1BUU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BUU pdb_00001buu 10.2210/pdb1buu/pdb RCSB RCSB008325 ? ? WWPDB D_1000008325 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BUU _pdbx_database_status.recvd_initial_deposition_date 1998-09-06 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ng, K.K.-S.' 1 'Park-Snyder, S.' 2 'Weis, W.I.' 3 # _citation.id primary _citation.title 'Ca2+-dependent structural changes in C-type mannose-binding proteins.' _citation.journal_abbrev Biochemistry _citation.journal_volume 37 _citation.page_first 17965 _citation.page_last 17976 _citation.year 1998 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9922165 _citation.pdbx_database_id_DOI 10.1021/bi981972a # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ng, K.K.' 1 ? primary 'Park-Snyder, S.' 2 ? primary 'Weis, W.I.' 3 ? # _cell.entry_id 1BUU _cell.length_a 94.400 _cell.length_b 94.400 _cell.length_c 94.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BUU _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN (MANNOSE-BINDING PROTEIN A)' 18449.816 1 ? ? 'LECTIN, TRIMERIZATION, AND PORTION OF COLLAGENOUS DOMAIN DOMAINS' ? 2 non-polymer syn 'HOLMIUM ATOM' 164.930 1 ? ? ? ? 3 water nat water 18.015 171 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AIEVSQGPKGQKGDRGDSRAIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRG TVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNGLWNDISCQASH TAVCEFPA ; _entity_poly.pdbx_seq_one_letter_code_can ;AIEVSQGPKGQKGDRGDSRAIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRG TVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNGLWNDISCQASH TAVCEFPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ILE n 1 3 GLU n 1 4 VAL n 1 5 SER n 1 6 GLN n 1 7 GLY n 1 8 PRO n 1 9 LYS n 1 10 GLY n 1 11 GLN n 1 12 LYS n 1 13 GLY n 1 14 ASP n 1 15 ARG n 1 16 GLY n 1 17 ASP n 1 18 SER n 1 19 ARG n 1 20 ALA n 1 21 ILE n 1 22 GLU n 1 23 VAL n 1 24 LYS n 1 25 LEU n 1 26 ALA n 1 27 ASN n 1 28 MET n 1 29 GLU n 1 30 ALA n 1 31 GLU n 1 32 ILE n 1 33 ASN n 1 34 THR n 1 35 LEU n 1 36 LYS n 1 37 SER n 1 38 LYS n 1 39 LEU n 1 40 GLU n 1 41 LEU n 1 42 THR n 1 43 ASN n 1 44 LYS n 1 45 LEU n 1 46 HIS n 1 47 ALA n 1 48 PHE n 1 49 SER n 1 50 MET n 1 51 GLY n 1 52 LYS n 1 53 LYS n 1 54 SER n 1 55 GLY n 1 56 LYS n 1 57 LYS n 1 58 PHE n 1 59 PHE n 1 60 VAL n 1 61 THR n 1 62 ASN n 1 63 HIS n 1 64 GLU n 1 65 ARG n 1 66 MET n 1 67 PRO n 1 68 PHE n 1 69 SER n 1 70 LYS n 1 71 VAL n 1 72 LYS n 1 73 ALA n 1 74 LEU n 1 75 CYS n 1 76 SER n 1 77 GLU n 1 78 LEU n 1 79 ARG n 1 80 GLY n 1 81 THR n 1 82 VAL n 1 83 ALA n 1 84 ILE n 1 85 PRO n 1 86 ARG n 1 87 ASN n 1 88 ALA n 1 89 GLU n 1 90 GLU n 1 91 ASN n 1 92 LYS n 1 93 ALA n 1 94 ILE n 1 95 GLN n 1 96 GLU n 1 97 VAL n 1 98 ALA n 1 99 LYS n 1 100 THR n 1 101 SER n 1 102 ALA n 1 103 PHE n 1 104 LEU n 1 105 GLY n 1 106 ILE n 1 107 THR n 1 108 ASP n 1 109 GLU n 1 110 VAL n 1 111 THR n 1 112 GLU n 1 113 GLY n 1 114 GLN n 1 115 PHE n 1 116 MET n 1 117 TYR n 1 118 VAL n 1 119 THR n 1 120 GLY n 1 121 GLY n 1 122 ARG n 1 123 LEU n 1 124 THR n 1 125 TYR n 1 126 SER n 1 127 ASN n 1 128 TRP n 1 129 LYS n 1 130 LYS n 1 131 ASP n 1 132 GLU n 1 133 PRO n 1 134 ASN n 1 135 ASP n 1 136 HIS n 1 137 GLY n 1 138 SER n 1 139 GLY n 1 140 GLU n 1 141 ASP n 1 142 CYS n 1 143 VAL n 1 144 THR n 1 145 ILE n 1 146 VAL n 1 147 ASP n 1 148 ASN n 1 149 GLY n 1 150 LEU n 1 151 TRP n 1 152 ASN n 1 153 ASP n 1 154 ILE n 1 155 SER n 1 156 CYS n 1 157 GLN n 1 158 ALA n 1 159 SER n 1 160 HIS n 1 161 THR n 1 162 ALA n 1 163 VAL n 1 164 CYS n 1 165 GLU n 1 166 PHE n 1 167 PRO n 1 168 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ LIVER _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM109 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location PERIPLASM _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PINIIIOMPA2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MBL1_RAT _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P19999 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1BUU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 168 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P19999 _struct_ref_seq.db_align_beg 71 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 54 _struct_ref_seq.pdbx_auth_seq_align_end 221 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1BUU ALA A 1 ? UNP P19999 GLY 71 'expression tag' 54 1 1 1BUU ILE A 2 ? UNP P19999 ALA 72 'expression tag' 55 2 1 1BUU GLU A 3 ? UNP P19999 PRO 73 'expression tag' 56 3 1 1BUU VAL A 4 ? UNP P19999 GLY 74 'expression tag' 57 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HO non-polymer . 'HOLMIUM ATOM' ? Ho 164.930 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1BUU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.80 _exptl_crystal.density_percent_sol 67 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;HANGING-DROP VAPOR DIFFUSION AGAINST RESERVOIR CONTAINING 11-15% (W/V) PEG 3350, 0.325 MM HOCL3, 100 MM TRIS-CL PH 8.0, 10 MM NACL, 0.02% NAN3., vapor diffusion - hanging drop ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1994-05-15 _diffrn_detector.details '0.3 MM COLLIMATOR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BUU _reflns.observed_criterion_sigma_I -3. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.90 _reflns.number_obs 20530 _reflns.number_all ? _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value 0.056 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 12.1 _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 88.0 _reflns_shell.Rmerge_I_obs 0.215 _reflns_shell.pdbx_Rsym_value 0.215 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1BUU _refine.ls_number_reflns_obs 20530 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF 1000000 _refine.ls_d_res_low 50. _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 91.8 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.214 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.0 _refine.ls_number_reflns_R_free 2020 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 28.9 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.45 _refine.solvent_model_param_bsol 80.9 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;MLF TARGET USED. THE FIRST 19 RESIDUES OF THE EXPRESSION CONSTRUCT, CONTAINING SEQUENCE FROM THE COLLAGENOUS DOMAIN, ARE DISORDERED AND CANNOT BE DISTINGUISHED IN ELECTRON DENSITY. ; _refine.pdbx_starting_model 'PDB ENTRY 1RTM, CHAIN 1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1BUU _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.12 _refine_analyze.Luzzati_d_res_low_obs 5. _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1153 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 171 _refine_hist.number_atoms_total 1325 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 50. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.75 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.3 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.1 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.1 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.2 2.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.97 _refine_ls_shell.number_reflns_R_work 1104 _refine_ls_shell.R_factor_R_work 0.233 _refine_ls_shell.percent_reflns_obs 56.6 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error .020 _refine_ls_shell.percent_reflns_R_free 5.7 _refine_ls_shell.number_reflns_R_free 125 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1BUU _struct.title 'ONE HO3+ FORM OF RAT MANNOSE-BINDING PROTEIN A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BUU _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'LECTIN, HOST DEFENSE, METALLOPROTEIN, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 21 ? SER A 49 ? ILE A 74 SER A 102 1 ? 29 HELX_P HELX_P2 2 PHE A 68 ? GLU A 77 ? PHE A 121 GLU A 130 1 ? 10 HELX_P HELX_P3 3 ALA A 88 ? ALA A 98 ? ALA A 141 ALA A 151 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 164 SG ? ? A CYS 128 A CYS 217 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? A CYS 142 SG ? ? ? 1_555 A CYS 156 SG ? ? A CYS 195 A CYS 209 1_555 ? ? ? ? ? ? ? 2.030 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 58 ? THR A 61 ? PHE A 111 THR A 114 A 2 VAL A 163 ? PHE A 166 ? VAL A 216 PHE A 219 B 1 CYS A 142 ? ILE A 145 ? CYS A 195 ILE A 198 B 2 TRP A 151 ? ILE A 154 ? TRP A 204 ILE A 207 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 58 ? O PHE A 111 N PHE A 166 ? N PHE A 219 B 1 2 O CYS A 142 ? O CYS A 195 N ILE A 154 ? N ILE A 207 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details HO1 Author ? ? ? ? 6 'THIS IS DESIGNATED CALCIUM SITE 1 IN THE CALCIUM-BOUND MBP STRUCTURES' AC1 Software A HO 222 ? 6 'BINDING SITE FOR RESIDUE HO A 222' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 HO1 6 ASP A 108 ? ASP A 161 . ? 1_555 ? 2 HO1 6 GLU A 112 ? GLU A 165 . ? 1_555 ? 3 HO1 6 ASP A 135 ? ASP A 188 . ? 1_555 ? 4 HO1 6 GLU A 140 ? GLU A 193 . ? 1_555 ? 5 HO1 6 ASP A 141 ? ASP A 194 . ? 1_555 ? 6 HO1 6 HOH C . ? HOH A 252 . ? 1_555 ? 7 AC1 6 ASP A 108 ? ASP A 161 . ? 1_555 ? 8 AC1 6 GLU A 112 ? GLU A 165 . ? 1_555 ? 9 AC1 6 ASP A 135 ? ASP A 188 . ? 1_555 ? 10 AC1 6 GLU A 140 ? GLU A 193 . ? 1_555 ? 11 AC1 6 ASP A 141 ? ASP A 194 . ? 1_555 ? 12 AC1 6 HOH C . ? HOH A 252 . ? 1_555 ? # _database_PDB_matrix.entry_id 1BUU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BUU _atom_sites.fract_transf_matrix[1][1] 0.010593 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010593 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010593 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C HO N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 54 ? ? ? A . n A 1 2 ILE 2 55 ? ? ? A . n A 1 3 GLU 3 56 ? ? ? A . n A 1 4 VAL 4 57 ? ? ? A . n A 1 5 SER 5 58 ? ? ? A . n A 1 6 GLN 6 59 ? ? ? A . n A 1 7 GLY 7 60 ? ? ? A . n A 1 8 PRO 8 61 ? ? ? A . n A 1 9 LYS 9 62 ? ? ? A . n A 1 10 GLY 10 63 ? ? ? A . n A 1 11 GLN 11 64 ? ? ? A . n A 1 12 LYS 12 65 ? ? ? A . n A 1 13 GLY 13 66 ? ? ? A . n A 1 14 ASP 14 67 ? ? ? A . n A 1 15 ARG 15 68 ? ? ? A . n A 1 16 GLY 16 69 ? ? ? A . n A 1 17 ASP 17 70 ? ? ? A . n A 1 18 SER 18 71 ? ? ? A . n A 1 19 ARG 19 72 ? ? ? A . n A 1 20 ALA 20 73 73 ALA ALA A . n A 1 21 ILE 21 74 74 ILE ILE A . n A 1 22 GLU 22 75 75 GLU GLU A . n A 1 23 VAL 23 76 76 VAL VAL A . n A 1 24 LYS 24 77 77 LYS LYS A . n A 1 25 LEU 25 78 78 LEU LEU A . n A 1 26 ALA 26 79 79 ALA ALA A . n A 1 27 ASN 27 80 80 ASN ASN A . n A 1 28 MET 28 81 81 MET MET A . n A 1 29 GLU 29 82 82 GLU GLU A . n A 1 30 ALA 30 83 83 ALA ALA A . n A 1 31 GLU 31 84 84 GLU GLU A . n A 1 32 ILE 32 85 85 ILE ILE A . n A 1 33 ASN 33 86 86 ASN ASN A . n A 1 34 THR 34 87 87 THR THR A . n A 1 35 LEU 35 88 88 LEU LEU A . n A 1 36 LYS 36 89 89 LYS LYS A . n A 1 37 SER 37 90 90 SER SER A . n A 1 38 LYS 38 91 91 LYS LYS A . n A 1 39 LEU 39 92 92 LEU LEU A . n A 1 40 GLU 40 93 93 GLU GLU A . n A 1 41 LEU 41 94 94 LEU LEU A . n A 1 42 THR 42 95 95 THR THR A . n A 1 43 ASN 43 96 96 ASN ASN A . n A 1 44 LYS 44 97 97 LYS LYS A . n A 1 45 LEU 45 98 98 LEU LEU A . n A 1 46 HIS 46 99 99 HIS HIS A . n A 1 47 ALA 47 100 100 ALA ALA A . n A 1 48 PHE 48 101 101 PHE PHE A . n A 1 49 SER 49 102 102 SER SER A . n A 1 50 MET 50 103 103 MET MET A . n A 1 51 GLY 51 104 104 GLY GLY A . n A 1 52 LYS 52 105 105 LYS LYS A . n A 1 53 LYS 53 106 106 LYS LYS A . n A 1 54 SER 54 107 107 SER SER A . n A 1 55 GLY 55 108 108 GLY GLY A . n A 1 56 LYS 56 109 109 LYS LYS A . n A 1 57 LYS 57 110 110 LYS LYS A . n A 1 58 PHE 58 111 111 PHE PHE A . n A 1 59 PHE 59 112 112 PHE PHE A . n A 1 60 VAL 60 113 113 VAL VAL A . n A 1 61 THR 61 114 114 THR THR A . n A 1 62 ASN 62 115 115 ASN ASN A . n A 1 63 HIS 63 116 116 HIS HIS A . n A 1 64 GLU 64 117 117 GLU GLU A . n A 1 65 ARG 65 118 118 ARG ARG A . n A 1 66 MET 66 119 119 MET MET A . n A 1 67 PRO 67 120 120 PRO PRO A . n A 1 68 PHE 68 121 121 PHE PHE A . n A 1 69 SER 69 122 122 SER SER A . n A 1 70 LYS 70 123 123 LYS LYS A . n A 1 71 VAL 71 124 124 VAL VAL A . n A 1 72 LYS 72 125 125 LYS LYS A . n A 1 73 ALA 73 126 126 ALA ALA A . n A 1 74 LEU 74 127 127 LEU LEU A . n A 1 75 CYS 75 128 128 CYS CYS A . n A 1 76 SER 76 129 129 SER SER A . n A 1 77 GLU 77 130 130 GLU GLU A . n A 1 78 LEU 78 131 131 LEU LEU A . n A 1 79 ARG 79 132 132 ARG ARG A . n A 1 80 GLY 80 133 133 GLY GLY A . n A 1 81 THR 81 134 134 THR THR A . n A 1 82 VAL 82 135 135 VAL VAL A . n A 1 83 ALA 83 136 136 ALA ALA A . n A 1 84 ILE 84 137 137 ILE ILE A . n A 1 85 PRO 85 138 138 PRO PRO A . n A 1 86 ARG 86 139 139 ARG ARG A . n A 1 87 ASN 87 140 140 ASN ASN A . n A 1 88 ALA 88 141 141 ALA ALA A . n A 1 89 GLU 89 142 142 GLU GLU A . n A 1 90 GLU 90 143 143 GLU GLU A . n A 1 91 ASN 91 144 144 ASN ASN A . n A 1 92 LYS 92 145 145 LYS LYS A . n A 1 93 ALA 93 146 146 ALA ALA A . n A 1 94 ILE 94 147 147 ILE ILE A . n A 1 95 GLN 95 148 148 GLN GLN A . n A 1 96 GLU 96 149 149 GLU GLU A . n A 1 97 VAL 97 150 150 VAL VAL A . n A 1 98 ALA 98 151 151 ALA ALA A . n A 1 99 LYS 99 152 152 LYS LYS A . n A 1 100 THR 100 153 153 THR THR A . n A 1 101 SER 101 154 154 SER SER A . n A 1 102 ALA 102 155 155 ALA ALA A . n A 1 103 PHE 103 156 156 PHE PHE A . n A 1 104 LEU 104 157 157 LEU LEU A . n A 1 105 GLY 105 158 158 GLY GLY A . n A 1 106 ILE 106 159 159 ILE ILE A . n A 1 107 THR 107 160 160 THR THR A . n A 1 108 ASP 108 161 161 ASP ASP A . n A 1 109 GLU 109 162 162 GLU GLU A . n A 1 110 VAL 110 163 163 VAL VAL A . n A 1 111 THR 111 164 164 THR THR A . n A 1 112 GLU 112 165 165 GLU GLU A . n A 1 113 GLY 113 166 166 GLY GLY A . n A 1 114 GLN 114 167 167 GLN GLN A . n A 1 115 PHE 115 168 168 PHE PHE A . n A 1 116 MET 116 169 169 MET MET A . n A 1 117 TYR 117 170 170 TYR TYR A . n A 1 118 VAL 118 171 171 VAL VAL A . n A 1 119 THR 119 172 172 THR THR A . n A 1 120 GLY 120 173 173 GLY GLY A . n A 1 121 GLY 121 174 174 GLY GLY A . n A 1 122 ARG 122 175 175 ARG ARG A . n A 1 123 LEU 123 176 176 LEU LEU A . n A 1 124 THR 124 177 177 THR THR A . n A 1 125 TYR 125 178 178 TYR TYR A . n A 1 126 SER 126 179 179 SER SER A . n A 1 127 ASN 127 180 180 ASN ASN A . n A 1 128 TRP 128 181 181 TRP TRP A . n A 1 129 LYS 129 182 182 LYS LYS A . n A 1 130 LYS 130 183 183 LYS LYS A . n A 1 131 ASP 131 184 184 ASP ASP A . n A 1 132 GLU 132 185 185 GLU GLU A . n A 1 133 PRO 133 186 186 PRO PRO A . n A 1 134 ASN 134 187 187 ASN ASN A . n A 1 135 ASP 135 188 188 ASP ASP A . n A 1 136 HIS 136 189 189 HIS HIS A . n A 1 137 GLY 137 190 190 GLY GLY A . n A 1 138 SER 138 191 191 SER SER A . n A 1 139 GLY 139 192 192 GLY GLY A . n A 1 140 GLU 140 193 193 GLU GLU A . n A 1 141 ASP 141 194 194 ASP ASP A . n A 1 142 CYS 142 195 195 CYS CYS A . n A 1 143 VAL 143 196 196 VAL VAL A . n A 1 144 THR 144 197 197 THR THR A . n A 1 145 ILE 145 198 198 ILE ILE A . n A 1 146 VAL 146 199 199 VAL VAL A . n A 1 147 ASP 147 200 200 ASP ASP A . n A 1 148 ASN 148 201 201 ASN ASN A . n A 1 149 GLY 149 202 202 GLY GLY A . n A 1 150 LEU 150 203 203 LEU LEU A . n A 1 151 TRP 151 204 204 TRP TRP A . n A 1 152 ASN 152 205 205 ASN ASN A . n A 1 153 ASP 153 206 206 ASP ASP A . n A 1 154 ILE 154 207 207 ILE ILE A . n A 1 155 SER 155 208 208 SER SER A . n A 1 156 CYS 156 209 209 CYS CYS A . n A 1 157 GLN 157 210 210 GLN GLN A . n A 1 158 ALA 158 211 211 ALA ALA A . n A 1 159 SER 159 212 212 SER SER A . n A 1 160 HIS 160 213 213 HIS HIS A . n A 1 161 THR 161 214 214 THR THR A . n A 1 162 ALA 162 215 215 ALA ALA A . n A 1 163 VAL 163 216 216 VAL VAL A . n A 1 164 CYS 164 217 217 CYS CYS A . n A 1 165 GLU 165 218 218 GLU GLU A . n A 1 166 PHE 166 219 219 PHE PHE A . n A 1 167 PRO 167 220 220 PRO PRO A . n A 1 168 ALA 168 221 221 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HO 1 222 1 HO HO A . C 3 HOH 1 223 1 HOH HOH A . C 3 HOH 2 224 2 HOH HOH A . C 3 HOH 3 225 3 HOH HOH A . C 3 HOH 4 226 4 HOH HOH A . C 3 HOH 5 227 5 HOH HOH A . C 3 HOH 6 228 6 HOH HOH A . C 3 HOH 7 229 7 HOH HOH A . C 3 HOH 8 230 8 HOH HOH A . C 3 HOH 9 231 9 HOH HOH A . C 3 HOH 10 232 10 HOH HOH A . C 3 HOH 11 233 11 HOH HOH A . C 3 HOH 12 234 12 HOH HOH A . C 3 HOH 13 235 13 HOH HOH A . C 3 HOH 14 236 14 HOH HOH A . C 3 HOH 15 237 15 HOH HOH A . C 3 HOH 16 238 16 HOH HOH A . C 3 HOH 17 239 17 HOH HOH A . C 3 HOH 18 240 18 HOH HOH A . C 3 HOH 19 241 19 HOH HOH A . C 3 HOH 20 242 20 HOH HOH A . C 3 HOH 21 243 21 HOH HOH A . C 3 HOH 22 244 22 HOH HOH A . C 3 HOH 23 245 23 HOH HOH A . C 3 HOH 24 246 24 HOH HOH A . C 3 HOH 25 247 25 HOH HOH A . C 3 HOH 26 248 26 HOH HOH A . C 3 HOH 27 249 27 HOH HOH A . C 3 HOH 28 250 28 HOH HOH A . C 3 HOH 29 251 29 HOH HOH A . C 3 HOH 30 252 30 HOH HOH A . C 3 HOH 31 253 31 HOH HOH A . C 3 HOH 32 254 32 HOH HOH A . C 3 HOH 33 255 33 HOH HOH A . C 3 HOH 34 256 34 HOH HOH A . C 3 HOH 35 257 35 HOH HOH A . C 3 HOH 36 258 36 HOH HOH A . C 3 HOH 37 259 37 HOH HOH A . C 3 HOH 38 260 38 HOH HOH A . C 3 HOH 39 261 39 HOH HOH A . C 3 HOH 40 262 40 HOH HOH A . C 3 HOH 41 263 41 HOH HOH A . C 3 HOH 42 264 42 HOH HOH A . C 3 HOH 43 265 43 HOH HOH A . C 3 HOH 44 266 44 HOH HOH A . C 3 HOH 45 267 45 HOH HOH A . C 3 HOH 46 268 46 HOH HOH A . C 3 HOH 47 269 47 HOH HOH A . C 3 HOH 48 270 48 HOH HOH A . C 3 HOH 49 271 49 HOH HOH A . C 3 HOH 50 272 50 HOH HOH A . C 3 HOH 51 273 51 HOH HOH A . C 3 HOH 52 274 52 HOH HOH A . C 3 HOH 53 275 53 HOH HOH A . C 3 HOH 54 276 54 HOH HOH A . C 3 HOH 55 277 55 HOH HOH A . C 3 HOH 56 278 56 HOH HOH A . C 3 HOH 57 279 57 HOH HOH A . C 3 HOH 58 280 58 HOH HOH A . C 3 HOH 59 281 59 HOH HOH A . C 3 HOH 60 282 60 HOH HOH A . C 3 HOH 61 283 61 HOH HOH A . C 3 HOH 62 284 62 HOH HOH A . C 3 HOH 63 285 63 HOH HOH A . C 3 HOH 64 286 64 HOH HOH A . C 3 HOH 65 287 65 HOH HOH A . C 3 HOH 66 288 66 HOH HOH A . C 3 HOH 67 289 67 HOH HOH A . C 3 HOH 68 290 68 HOH HOH A . C 3 HOH 69 291 69 HOH HOH A . C 3 HOH 70 292 70 HOH HOH A . C 3 HOH 71 293 71 HOH HOH A . C 3 HOH 72 294 72 HOH HOH A . C 3 HOH 73 295 73 HOH HOH A . C 3 HOH 74 296 74 HOH HOH A . C 3 HOH 75 297 75 HOH HOH A . C 3 HOH 76 298 76 HOH HOH A . C 3 HOH 77 299 77 HOH HOH A . C 3 HOH 78 300 78 HOH HOH A . C 3 HOH 79 301 79 HOH HOH A . C 3 HOH 80 302 80 HOH HOH A . C 3 HOH 81 303 81 HOH HOH A . C 3 HOH 82 304 82 HOH HOH A . C 3 HOH 83 305 83 HOH HOH A . C 3 HOH 84 306 84 HOH HOH A . C 3 HOH 85 307 85 HOH HOH A . C 3 HOH 86 308 86 HOH HOH A . C 3 HOH 87 309 87 HOH HOH A . C 3 HOH 88 310 88 HOH HOH A . C 3 HOH 89 311 89 HOH HOH A . C 3 HOH 90 312 90 HOH HOH A . C 3 HOH 91 313 91 HOH HOH A . C 3 HOH 92 314 92 HOH HOH A . C 3 HOH 93 315 93 HOH HOH A . C 3 HOH 94 316 94 HOH HOH A . C 3 HOH 95 317 95 HOH HOH A . C 3 HOH 96 318 96 HOH HOH A . C 3 HOH 97 319 97 HOH HOH A . C 3 HOH 98 320 98 HOH HOH A . C 3 HOH 99 321 99 HOH HOH A . C 3 HOH 100 322 100 HOH HOH A . C 3 HOH 101 323 101 HOH HOH A . C 3 HOH 102 324 102 HOH HOH A . C 3 HOH 103 325 103 HOH HOH A . C 3 HOH 104 326 104 HOH HOH A . C 3 HOH 105 327 105 HOH HOH A . C 3 HOH 106 328 106 HOH HOH A . C 3 HOH 107 329 107 HOH HOH A . C 3 HOH 108 330 108 HOH HOH A . C 3 HOH 109 331 109 HOH HOH A . C 3 HOH 110 332 110 HOH HOH A . C 3 HOH 111 333 111 HOH HOH A . C 3 HOH 112 334 112 HOH HOH A . C 3 HOH 113 335 113 HOH HOH A . C 3 HOH 114 336 114 HOH HOH A . C 3 HOH 115 337 115 HOH HOH A . C 3 HOH 116 338 116 HOH HOH A . C 3 HOH 117 339 117 HOH HOH A . C 3 HOH 118 340 118 HOH HOH A . C 3 HOH 119 341 119 HOH HOH A . C 3 HOH 120 342 120 HOH HOH A . C 3 HOH 121 343 121 HOH HOH A . C 3 HOH 122 344 122 HOH HOH A . C 3 HOH 123 345 123 HOH HOH A . C 3 HOH 124 346 124 HOH HOH A . C 3 HOH 125 347 125 HOH HOH A . C 3 HOH 126 348 126 HOH HOH A . C 3 HOH 127 349 127 HOH HOH A . C 3 HOH 128 350 128 HOH HOH A . C 3 HOH 129 351 129 HOH HOH A . C 3 HOH 130 352 130 HOH HOH A . C 3 HOH 131 353 131 HOH HOH A . C 3 HOH 132 354 132 HOH HOH A . C 3 HOH 133 355 133 HOH HOH A . C 3 HOH 134 356 134 HOH HOH A . C 3 HOH 135 357 135 HOH HOH A . C 3 HOH 136 358 136 HOH HOH A . C 3 HOH 137 359 137 HOH HOH A . C 3 HOH 138 360 138 HOH HOH A . C 3 HOH 139 361 139 HOH HOH A . C 3 HOH 140 362 140 HOH HOH A . C 3 HOH 141 363 141 HOH HOH A . C 3 HOH 142 364 142 HOH HOH A . C 3 HOH 143 365 143 HOH HOH A . C 3 HOH 144 366 144 HOH HOH A . C 3 HOH 145 367 145 HOH HOH A . C 3 HOH 146 368 146 HOH HOH A . C 3 HOH 147 369 147 HOH HOH A . C 3 HOH 148 370 148 HOH HOH A . C 3 HOH 149 371 149 HOH HOH A . C 3 HOH 150 372 150 HOH HOH A . C 3 HOH 151 373 151 HOH HOH A . C 3 HOH 152 374 152 HOH HOH A . C 3 HOH 153 375 153 HOH HOH A . C 3 HOH 154 376 154 HOH HOH A . C 3 HOH 155 377 155 HOH HOH A . C 3 HOH 156 378 156 HOH HOH A . C 3 HOH 157 379 157 HOH HOH A . C 3 HOH 158 380 158 HOH HOH A . C 3 HOH 159 381 159 HOH HOH A . C 3 HOH 160 382 160 HOH HOH A . C 3 HOH 161 383 161 HOH HOH A . C 3 HOH 162 384 162 HOH HOH A . C 3 HOH 163 385 163 HOH HOH A . C 3 HOH 164 386 164 HOH HOH A . C 3 HOH 165 387 165 HOH HOH A . C 3 HOH 166 388 166 HOH HOH A . C 3 HOH 167 389 167 HOH HOH A . C 3 HOH 168 390 168 HOH HOH A . C 3 HOH 169 391 169 HOH HOH A . C 3 HOH 170 392 170 HOH HOH A . C 3 HOH 171 393 171 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 software_defined_assembly PISA,PQS trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,B,C 2 1,4,5 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 6480 ? 2 MORE -87 ? 2 'SSA (A^2)' 21350 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_665 -z+3/2,-x+1,y+1/2 0.0000000000 0.0000000000 -1.0000000000 141.6000000000 -1.0000000000 0.0000000000 0.0000000000 94.4000000000 0.0000000000 1.0000000000 0.0000000000 47.2000000000 3 'crystal symmetry operation' 10_646 -y+1,z-1/2,-x+3/2 0.0000000000 -1.0000000000 0.0000000000 94.4000000000 0.0000000000 0.0000000000 1.0000000000 -47.2000000000 -1.0000000000 0.0000000000 0.0000000000 141.6000000000 4 'crystal symmetry operation' 5_546 z,x-1,y+1 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -94.4000000000 0.0000000000 1.0000000000 0.0000000000 94.4000000000 5 'crystal symmetry operation' 9_645 y+1,z-1,x 0.0000000000 1.0000000000 0.0000000000 94.4000000000 0.0000000000 0.0000000000 1.0000000000 -94.4000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-09-09 2 'Structure model' 1 1 2007-10-16 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' . ? 3 CNS refinement 0.3C ? 4 X-PLOR phasing . ? 5 # _pdbx_entry_details.entry_id 1BUU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE FIRST 4 RESIDUES IN THE EXPRESSION CONSTRUCT, ALA-ILE-GLU-VAL, ARE A CLONING ARTIFACT AND ARE NOT PART OF THE NATIVE SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 152 ? ? 70.22 -9.27 2 1 ASN A 180 ? ? -147.92 53.77 3 1 LYS A 183 ? ? -135.25 -99.47 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 54 ? A ALA 1 2 1 Y 1 A ILE 55 ? A ILE 2 3 1 Y 1 A GLU 56 ? A GLU 3 4 1 Y 1 A VAL 57 ? A VAL 4 5 1 Y 1 A SER 58 ? A SER 5 6 1 Y 1 A GLN 59 ? A GLN 6 7 1 Y 1 A GLY 60 ? A GLY 7 8 1 Y 1 A PRO 61 ? A PRO 8 9 1 Y 1 A LYS 62 ? A LYS 9 10 1 Y 1 A GLY 63 ? A GLY 10 11 1 Y 1 A GLN 64 ? A GLN 11 12 1 Y 1 A LYS 65 ? A LYS 12 13 1 Y 1 A GLY 66 ? A GLY 13 14 1 Y 1 A ASP 67 ? A ASP 14 15 1 Y 1 A ARG 68 ? A ARG 15 16 1 Y 1 A GLY 69 ? A GLY 16 17 1 Y 1 A ASP 70 ? A ASP 17 18 1 Y 1 A SER 71 ? A SER 18 19 1 Y 1 A ARG 72 ? A ARG 19 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HO HO HO N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'HOLMIUM ATOM' HO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1RTM _pdbx_initial_refinement_model.details 'PDB ENTRY 1RTM, CHAIN 1' #