HEADER COMPLEX (TRANSCRIPTION FACTOR/DNA) 16-SEP-98 1BVO TITLE DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA CAVEAT 1BVO DC D 1 HAS WRONG CHIRALITY AT ATOM C4' COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DUPLEX; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA DUPLEX; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TRANSCRIPTION FACTOR GAMBIF1; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: SPECIFICITY DOMAIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ANOPHELES GAMBIAE; SOURCE 7 ORGANISM_COMMON: AFRICAN MALARIA MOSQUITO; SOURCE 8 ORGANISM_TAXID: 7165; SOURCE 9 CELLULAR_LOCATION: CYTOPLASM; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS TRANSCRIPTION FACTOR, REL PROTEIN, MORPHOGEN, IMMUNITY, DEVELOPMENT, KEYWDS 2 INSECTS, COMPLEX (TRANSCRIPTION FACTOR-DNA), COMPLEX (TRANSCRIPTION KEYWDS 3 FACTOR-DNA) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.CRAMER,A.VARROT,C.BARILLAS-MURY,F.C.KAFATOS,C.W.MUELLER REVDAT 5 13-NOV-24 1BVO 1 REMARK REVDAT 4 29-NOV-17 1BVO 1 CAVEAT REMARK REVDAT 3 24-FEB-09 1BVO 1 VERSN REVDAT 2 01-APR-03 1BVO 1 JRNL REVDAT 1 12-JUL-99 1BVO 0 JRNL AUTH P.CRAMER,A.VARROT,C.BARILLAS-MURY,F.C.KAFATOS,C.W.MULLER JRNL TITL STRUCTURE OF THE SPECIFICITY DOMAIN OF THE DORSAL HOMOLOGUE JRNL TITL 2 GAMBIF1 BOUND TO DNA. JRNL REF STRUCTURE FOLD.DES. V. 7 841 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10425685 JRNL DOI 10.1016/S0969-2126(99)80107-5 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 8575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 404 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1013 REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 51 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1377 REMARK 3 NUCLEIC ACID ATOMS : 609 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 93.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.84000 REMARK 3 B22 (A**2) : -3.84000 REMARK 3 B33 (A**2) : 7.68000 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.600 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.600 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.400 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.700 ; 3.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 AT EARLY STAGES, PROGRAM REFMAC WAS USED. TO ACCOUNT FOR AVERAGED REMARK 3 BASE PAIRS (D6-D10, E26-E30), TWO STRUCTURES CONTAINING DIFFERENT REMARK 3 DNA STRANDS (CHAIN E AND D) WERE REFINED INDIVIDUALLY. AT A FINAL REMARK 3 STAGE, BOTH DNA STRANDS WERE INCLUDED IN THE MODEL AND GIVEN HALF REMARK 3 OCCUPANCY. CYS 126 AND CYS 131 ARE IN CLOSE PROXIMITY AND THE REMARK 3 ELECTRON DENSITY WOULD ALSO ALLOW MODELING OF A DISULPHIDE BRIDGE. REMARK 3 THIS MIGHT INDICATE PARTIAL OXIDATION. LOOP 81-84 IS BADLY REMARK 3 ORDERED. DURING REFINEMENT, IT HAS BEEN GIVEN AN OCCUPANCY OF 0.5. REMARK 3 LYS 222 IS THE LAST RESIDUE IN THE MODEL. THE QUALITY OF ITS REMARK 3 ELECTRON DENSITY IS POOR AND DID NOT ALLOW UNAMBIGUOUS MODELING. REMARK 3 REMARK 3 THE C-TERMINAL DIMERIZATION DOMAIN OF THE REL HOMOLOGY REMARK 3 REGION OF GAMBIF1 IS PRESENT IN THE USED CONSTRUCT AND THE REMARK 3 CRYSTALS. HOWEVER, IT IS DISORDERED AND COULD NOT BE REMARK 3 INCLUDED IN THE MODEL. REMARK 4 REMARK 4 1BVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.08000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.12000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.04000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.08000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 24.04000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.61000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 144.24000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 2 O4' DT D 2 C1' 0.078 REMARK 500 DT D 2 C5 DT D 2 C6 -0.043 REMARK 500 DT D 2 C5 DT D 2 C7 0.043 REMARK 500 DG D 3 N7 DG D 3 C8 0.070 REMARK 500 DG D 4 C5 DG D 4 N7 0.037 REMARK 500 DG D 5 N3 DG D 5 C4 0.088 REMARK 500 DG D 5 O3' DA D 6 P 0.087 REMARK 500 DC D 11 N3 DC D 11 C4 0.045 REMARK 500 DC D 11 C5 DC D 11 C6 0.052 REMARK 500 DC D 12 C4 DC D 12 N4 0.057 REMARK 500 DA D 14 O4' DA D 14 C4' 0.071 REMARK 500 DA D 14 O3' DA D 14 C3' -0.047 REMARK 500 DA E 28 C2 DA E 28 N3 -0.063 REMARK 500 DA E 28 C5 DA E 28 C6 -0.058 REMARK 500 DA E 28 N9 DA E 28 C4 -0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 1 C5' - C4' - C3' ANGL. DEV. = 17.8 DEGREES REMARK 500 DC D 1 C6 - N1 - C2 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC D 1 C2 - N3 - C4 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC D 1 C5 - C6 - N1 ANGL. DEV. = -3.5 DEGREES REMARK 500 DC D 1 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT D 2 O5' - P - OP2 ANGL. DEV. = 15.0 DEGREES REMARK 500 DT D 2 C5' - C4' - C3' ANGL. DEV. = 9.5 DEGREES REMARK 500 DT D 2 C5' - C4' - O4' ANGL. DEV. = 14.4 DEGREES REMARK 500 DT D 2 O4' - C1' - C2' ANGL. DEV. = -10.0 DEGREES REMARK 500 DT D 2 O4' - C1' - N1 ANGL. DEV. = -9.3 DEGREES REMARK 500 DT D 2 N3 - C4 - C5 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT D 2 C4 - C5 - C6 ANGL. DEV. = 6.3 DEGREES REMARK 500 DT D 2 C5 - C6 - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT D 2 N3 - C4 - O4 ANGL. DEV. = 13.7 DEGREES REMARK 500 DT D 2 C5 - C4 - O4 ANGL. DEV. = -9.9 DEGREES REMARK 500 DT D 2 C4 - C5 - C7 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG D 3 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG D 3 C6 - C5 - N7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG D 3 N1 - C2 - N2 ANGL. DEV. = -12.4 DEGREES REMARK 500 DG D 3 N3 - C2 - N2 ANGL. DEV. = 10.6 DEGREES REMARK 500 DG D 3 N1 - C6 - O6 ANGL. DEV. = -7.4 DEGREES REMARK 500 DG D 3 C5 - C6 - O6 ANGL. DEV. = 7.6 DEGREES REMARK 500 DG D 3 C3' - O3' - P ANGL. DEV. = -8.0 DEGREES REMARK 500 DG D 4 O5' - P - OP1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DG D 4 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DG D 4 O4' - C1' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG D 4 C5 - N7 - C8 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG D 4 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG D 4 C8 - N9 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG D 4 N1 - C2 - N2 ANGL. DEV. = -6.8 DEGREES REMARK 500 DG D 4 C5 - C6 - O6 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG D 4 C3' - O3' - P ANGL. DEV. = -7.7 DEGREES REMARK 500 DG D 5 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DG D 5 C5' - C4' - C3' ANGL. DEV. = 7.8 DEGREES REMARK 500 DG D 5 C5' - C4' - O4' ANGL. DEV. = 14.1 DEGREES REMARK 500 DG D 5 C4' - C3' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG D 5 C6 - N1 - C2 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG D 5 N1 - C2 - N3 ANGL. DEV. = 6.4 DEGREES REMARK 500 DG D 5 N3 - C4 - C5 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG D 5 C4 - C5 - C6 ANGL. DEV. = 5.7 DEGREES REMARK 500 DG D 5 C8 - N9 - C4 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG D 5 N9 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG D 5 C6 - C5 - N7 ANGL. DEV. = -6.1 DEGREES REMARK 500 DG D 5 N1 - C2 - N2 ANGL. DEV. = -13.0 DEGREES REMARK 500 DG D 5 N3 - C2 - N2 ANGL. DEV. = 6.6 DEGREES REMARK 500 DG D 5 C4 - N9 - C1' ANGL. DEV. = 8.2 DEGREES REMARK 500 DA D 6 O3' - P - O5' ANGL. DEV. = -11.9 DEGREES REMARK 500 DC D 11 O3' - P - OP2 ANGL. DEV. = 12.7 DEGREES REMARK 500 DC D 11 O3' - P - OP1 ANGL. DEV. = -16.3 DEGREES REMARK 500 DC D 11 O5' - P - OP2 ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 84 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 59 53.36 -152.02 REMARK 500 ALA A 72 -17.13 71.16 REMARK 500 ALA A 99 126.20 -172.84 REMARK 500 GLU A 112 52.73 -93.32 REMARK 500 THR A 138 -50.62 -121.71 REMARK 500 ARG A 168 30.51 76.61 REMARK 500 ARG A 173 71.09 54.38 REMARK 500 ARG A 203 119.70 -33.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC D 1 0.12 SIDE CHAIN REMARK 500 DG E 35 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1BVO A 48 222 UNP Q17034 Q17034_ANOGA 48 222 DBREF 1BVO D 1 15 PDB 1BVO 1BVO 1 15 DBREF 1BVO E 21 35 PDB 1BVO 1BVO 21 35 SEQRES 1 D 15 DC DT DG DG DG DA DA DT DT DT DC DC DC SEQRES 2 D 15 DA DG SEQRES 1 E 15 DC DT DG DG DG DT DT DA DA DA DC DC DC SEQRES 2 E 15 DA DG SEQRES 1 A 175 PRO TYR VAL GLU ILE THR GLU GLN PRO HIS PRO LYS ALA SEQRES 2 A 175 LEU ARG PHE ARG TYR GLU CYS GLU GLY ARG SER ALA GLY SEQRES 3 A 175 SER ILE PRO GLY VAL ASN THR THR ALA GLU GLN LYS THR SEQRES 4 A 175 PHE PRO SER ILE GLN VAL HIS GLY TYR ARG GLY ARG ALA SEQRES 5 A 175 VAL VAL VAL VAL SER CYS VAL THR LYS GLU GLY PRO GLU SEQRES 6 A 175 HIS LYS PRO HIS PRO HIS ASN LEU VAL GLY LYS GLU GLY SEQRES 7 A 175 CYS LYS LYS GLY VAL CYS THR VAL GLU ILE ASN SER THR SEQRES 8 A 175 THR MET SER TYR THR PHE ASN ASN LEU GLY ILE GLN CYS SEQRES 9 A 175 VAL LYS LYS LYS ASP VAL GLU GLU ALA LEU ARG LEU ARG SEQRES 10 A 175 GLN GLU ILE ARG VAL ASP PRO PHE ARG THR GLY PHE GLY SEQRES 11 A 175 HIS ALA LYS GLU PRO GLY SER ILE ASP LEU ASN ALA VAL SEQRES 12 A 175 ARG LEU CYS PHE GLN VAL PHE LEU GLU GLY GLN GLN ARG SEQRES 13 A 175 GLY ARG PHE THR GLU PRO LEU THR PRO VAL VAL SER ASP SEQRES 14 A 175 ILE ILE TYR ASP LYS LYS FORMUL 4 HOH *36(H2 O) HELIX 1 1 GLU A 66 GLU A 68 5 3 HELIX 2 2 LYS A 154 ILE A 167 1 14 HELIX 3 3 GLY A 177 ALA A 179 5 3 HELIX 4 4 PRO A 182 SER A 184 5 3 SHEET 1 A 3 SER A 141 PHE A 144 0 SHEET 2 A 3 PRO A 88 HIS A 93 -1 N ILE A 90 O TYR A 142 SHEET 3 A 3 TYR A 49 GLU A 54 -1 N GLU A 54 O SER A 89 SHEET 1 B 4 CYS A 131 GLU A 134 0 SHEET 2 B 4 ALA A 99 VAL A 106 -1 N VAL A 103 O CYS A 131 SHEET 3 B 4 ARG A 191 GLU A 199 -1 N PHE A 197 O VAL A 100 SHEET 4 B 4 PHE A 206 PRO A 209 -1 N GLU A 208 O LEU A 198 SHEET 1 C 2 ASN A 119 VAL A 121 0 SHEET 2 C 2 GLY A 148 GLN A 150 -1 N GLN A 150 O ASN A 119 SSBOND 1 CYS A 126 CYS A 131 1555 1555 2.84 CRYST1 87.610 87.610 96.160 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010399 0.00000