HEADER LYASE 05-OCT-98 1BXK TITLE DTDP-GLUCOSE 4,6-DEHYDRATASE FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DTDP-GLUCOSE 4,6-DEHYDRATASE); COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.1.46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIMERASE, DEHYDRATASE, DEHYDROGENASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,A.D.HEGEMAN,P.A.FREY,H.M.HOLDEN REVDAT 4 07-FEB-24 1BXK 1 REMARK REVDAT 3 24-FEB-09 1BXK 1 VERSN REVDAT 2 22-DEC-99 1BXK 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 14-OCT-98 1BXK 0 JRNL AUTH J.B.THODEN,A.D.HEGEMAN,P.A.FREY,H.M.HOLDEN JRNL TITL MOLECULAR STRUCTURE OF DTDP-GLUCOSE 4,6-DEHYDRATASE FROM E. JRNL TITL 2 COLI JRNL REF PROTEIN SCI. JRNL REFN ESSN 1469-896X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 73774 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1950 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1950 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 73774 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5399 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.014 ; 2.300 ; 8366 REMARK 3 BOND ANGLES (DEGREES) : 2.338 ; 3.250 ; 11064 REMARK 3 TORSION ANGLES (DEGREES) : 16.521; 0.000 ; 5260 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.007 ; 9.750 ; 136 REMARK 3 GENERAL PLANES (A) : 0.012 ; 11.500; 1502 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.365 ; 5.000 ; 109 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : TNT REMARK 3 KSOL : 0.86 REMARK 3 BSOL : 325.9 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 270 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GOBEL MIRRORS REMARK 200 OPTICS : GOBEL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : BRUKER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALIBRE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73785 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000 100 MM K/MES PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 291 REMARK 465 ALA A 292 REMARK 465 ASP A 293 REMARK 465 ARG A 294 REMARK 465 PRO A 295 REMARK 465 GLY A 296 REMARK 465 HIS A 297 REMARK 465 ASP A 298 REMARK 465 LEU A 299 REMARK 465 LEU A 351 REMARK 465 GLY A 352 REMARK 465 LEU A 353 REMARK 465 LYS A 354 REMARK 465 GLY A 355 REMARK 465 ASP B 693 REMARK 465 ARG B 694 REMARK 465 PRO B 695 REMARK 465 GLY B 696 REMARK 465 HIS B 697 REMARK 465 ASP B 698 REMARK 465 LEU B 751 REMARK 465 GLY B 752 REMARK 465 LEU B 753 REMARK 465 LYS B 754 REMARK 465 GLY B 755 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 350 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG B 750 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 543 OD1 ASP B 545 2.08 REMARK 500 NH2 ARG A 234 O HOH A 570 2.11 REMARK 500 O ASP A 146 NH2 ARG A 300 2.14 REMARK 500 OE2 GLU A 256 NH1 ARG A 300 2.15 REMARK 500 O HOH A 406 O HOH A 564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 51 CD GLU A 51 OE1 0.085 REMARK 500 GLU A 72 CA GLU A 72 CB 0.214 REMARK 500 GLU A 84 CD GLU A 84 OE1 0.073 REMARK 500 GLU A 121 CD GLU A 121 OE2 0.077 REMARK 500 GLU A 150 CD GLU A 150 OE1 0.075 REMARK 500 GLU A 198 CD GLU A 198 OE1 0.071 REMARK 500 GLU A 230 CD GLU A 230 OE1 0.066 REMARK 500 GLU A 264 CD GLU A 264 OE1 0.078 REMARK 500 GLU A 268 CD GLU A 268 OE2 0.094 REMARK 500 GLU A 272 CD GLU A 272 OE1 0.069 REMARK 500 GLU A 311 CD GLU A 311 OE2 0.073 REMARK 500 GLU A 321 CD GLU A 321 OE1 0.072 REMARK 500 GLU A 335 CD GLU A 335 OE1 0.090 REMARK 500 GLU B 451 CD GLU B 451 OE1 0.111 REMARK 500 GLU B 456 CD GLU B 456 OE2 0.081 REMARK 500 LYS B 457 CE LYS B 457 NZ -0.296 REMARK 500 GLU B 499 CD GLU B 499 OE2 -0.067 REMARK 500 GLU B 510 CD GLU B 510 OE2 0.084 REMARK 500 GLU B 521 CD GLU B 521 OE1 0.083 REMARK 500 GLU B 536 CD GLU B 536 OE1 0.081 REMARK 500 GLU B 598 CD GLU B 598 OE1 0.080 REMARK 500 GLU B 630 CD GLU B 630 OE1 0.080 REMARK 500 GLU B 664 CD GLU B 664 OE1 0.072 REMARK 500 GLU B 671 CD GLU B 671 OE1 0.069 REMARK 500 GLU B 672 CD GLU B 672 OE1 0.094 REMARK 500 VAL B 691 CB VAL B 691 CG1 1.259 REMARK 500 VAL B 691 CB VAL B 691 CG2 2.161 REMARK 500 GLU B 711 CD GLU B 711 OE2 0.067 REMARK 500 GLU B 735 CD GLU B 735 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 MET A 42 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 GLN A 74 CB - CA - C ANGL. DEV. = -14.9 DEGREES REMARK 500 ASP A 76 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 TYR A 106 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 106 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 122 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 140 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 145 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 146 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 160 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 168 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASN A 186 N - CA - CB ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP A 231 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 231 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 261 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 304 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 325 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 343 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ASP A 343 CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG B 402 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 427 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 462 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 463 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP B 476 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 476 CB - CG - OD2 ANGL. DEV. = -9.5 DEGREES REMARK 500 PHE B 527 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 528 CD - NE - CZ ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP B 535 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 535 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 540 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B 546 CB - CG - OD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ALA B 573 CB - CA - C ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG B 576 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU B 583 N - CA - CB ANGL. DEV. = 13.6 DEGREES REMARK 500 ASP B 631 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 VAL B 639 CA - CB - CG2 ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 35 66.70 63.15 REMARK 500 GLN A 74 70.88 44.65 REMARK 500 ILE A 102 -60.14 -100.03 REMARK 500 SER A 133 -167.10 -128.74 REMARK 500 SER A 143 -158.68 -116.26 REMARK 500 ALA A 155 63.22 -155.15 REMARK 500 PRO A 181 85.08 -68.64 REMARK 500 LEU A 214 74.02 -100.59 REMARK 500 ALA A 274 63.45 -119.76 REMARK 500 PRO A 278 -173.33 -64.13 REMARK 500 ASP A 286 0.63 -65.33 REMARK 500 LEU B 435 63.66 65.43 REMARK 500 SER B 533 -162.42 -120.76 REMARK 500 ALA B 555 55.56 -157.55 REMARK 500 PRO B 581 94.84 -69.87 REMARK 500 LEU B 600 -75.57 -37.53 REMARK 500 VAL B 691 34.24 -99.38 REMARK 500 ALA B 705 39.73 -94.28 REMARK 500 ASN B 734 66.22 -111.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 780 DBREF 1BXK A 1 355 UNP P27830 RFFG_ECOLI 1 350 DBREF 1BXK B 401 755 UNP P27830 RFFG_ECOLI 1 350 SEQRES 1 A 355 MET ARG LYS ILE LEU ILE THR GLY GLY ALA GLY PHE ILE SEQRES 2 A 355 GLY SER ALA LEU VAL ARG TYR ILE ILE ASN GLU THR SER SEQRES 3 A 355 ASP ALA VAL VAL VAL VAL ASP LYS LEU THR TYR ALA GLY SEQRES 4 A 355 ASN LEU MET SER LEU ALA PRO VAL ALA GLN SER GLU ARG SEQRES 5 A 355 PHE ALA PHE GLU LYS VAL ASP ILE CYS ASP ARG ALA GLU SEQRES 6 A 355 LEU ALA ARG VAL PHE THR GLU HIS GLN PRO ASP CYS VAL SEQRES 7 A 355 MET HIS LEU ALA ALA GLU SER HIS VAL ASP ARG SER ILE SEQRES 8 A 355 ASP GLY PRO ALA ALA PHE ILE GLU THR ASN ILE VAL GLY SEQRES 9 A 355 THR TYR THR LEU LEU GLU ALA ALA ARG ALA TYR TRP ASN SEQRES 10 A 355 ALA LEU THR GLU ASP LYS LYS SER ALA PHE ARG PHE HIS SEQRES 11 A 355 HIS ILE SER THR ASP GLU VAL TYR GLY ASP LEU HIS SER SEQRES 12 A 355 THR ASP ASP PHE PHE THR GLU THR THR PRO TYR ALA PRO SEQRES 13 A 355 SER SER PRO TYR SER ALA SER LYS ALA SER SER ASP HIS SEQRES 14 A 355 LEU VAL ARG ALA TRP LEU ARG THR TYR GLY LEU PRO THR SEQRES 15 A 355 LEU ILE THR ASN CYS SER ASN ASN TYR GLY PRO TYR HIS SEQRES 16 A 355 PHE PRO GLU LYS LEU ILE PRO LEU MET ILE LEU ASN ALA SEQRES 17 A 355 LEU ALA GLY LYS SER LEU PRO VAL TYR GLY ASN GLY GLN SEQRES 18 A 355 GLN ILE ARG ASP TRP LEU TYR VAL GLU ASP HIS ALA ARG SEQRES 19 A 355 ALA LEU TYR CYS VAL ALA THR THR GLY LYS VAL GLY GLU SEQRES 20 A 355 THR TYR ASN ILE GLY GLY HIS ASN GLU ARG LYS ASN LEU SEQRES 21 A 355 ASP VAL VAL GLU THR ILE CYS GLU LEU LEU GLU GLU LEU SEQRES 22 A 355 ALA PRO ASN LYS PRO HIS GLY VAL ALA HIS TYR ARG ASP SEQRES 23 A 355 LEU ILE THR PHE VAL ALA ASP ARG PRO GLY HIS ASP LEU SEQRES 24 A 355 ARG TYR ALA ILE ASP ALA SER LYS ILE ALA ARG GLU LEU SEQRES 25 A 355 GLY CYS VAL PRO GLN GLU THR PHE GLU SER GLY MET ARG SEQRES 26 A 355 LYS THR VAL GLN TRP TYR LEU ALA ASN GLU SER TRP TRP SEQRES 27 A 355 LYS GLN VAL GLN ASP GLY SER TYR GLN GLY GLU ARG LEU SEQRES 28 A 355 GLY LEU LYS GLY SEQRES 1 B 355 MET ARG LYS ILE LEU ILE THR GLY GLY ALA GLY PHE ILE SEQRES 2 B 355 GLY SER ALA LEU VAL ARG TYR ILE ILE ASN GLU THR SER SEQRES 3 B 355 ASP ALA VAL VAL VAL VAL ASP LYS LEU THR TYR ALA GLY SEQRES 4 B 355 ASN LEU MET SER LEU ALA PRO VAL ALA GLN SER GLU ARG SEQRES 5 B 355 PHE ALA PHE GLU LYS VAL ASP ILE CYS ASP ARG ALA GLU SEQRES 6 B 355 LEU ALA ARG VAL PHE THR GLU HIS GLN PRO ASP CYS VAL SEQRES 7 B 355 MET HIS LEU ALA ALA GLU SER HIS VAL ASP ARG SER ILE SEQRES 8 B 355 ASP GLY PRO ALA ALA PHE ILE GLU THR ASN ILE VAL GLY SEQRES 9 B 355 THR TYR THR LEU LEU GLU ALA ALA ARG ALA TYR TRP ASN SEQRES 10 B 355 ALA LEU THR GLU ASP LYS LYS SER ALA PHE ARG PHE HIS SEQRES 11 B 355 HIS ILE SER THR ASP GLU VAL TYR GLY ASP LEU HIS SER SEQRES 12 B 355 THR ASP ASP PHE PHE THR GLU THR THR PRO TYR ALA PRO SEQRES 13 B 355 SER SER PRO TYR SER ALA SER LYS ALA SER SER ASP HIS SEQRES 14 B 355 LEU VAL ARG ALA TRP LEU ARG THR TYR GLY LEU PRO THR SEQRES 15 B 355 LEU ILE THR ASN CYS SER ASN ASN TYR GLY PRO TYR HIS SEQRES 16 B 355 PHE PRO GLU LYS LEU ILE PRO LEU MET ILE LEU ASN ALA SEQRES 17 B 355 LEU ALA GLY LYS SER LEU PRO VAL TYR GLY ASN GLY GLN SEQRES 18 B 355 GLN ILE ARG ASP TRP LEU TYR VAL GLU ASP HIS ALA ARG SEQRES 19 B 355 ALA LEU TYR CYS VAL ALA THR THR GLY LYS VAL GLY GLU SEQRES 20 B 355 THR TYR ASN ILE GLY GLY HIS ASN GLU ARG LYS ASN LEU SEQRES 21 B 355 ASP VAL VAL GLU THR ILE CYS GLU LEU LEU GLU GLU LEU SEQRES 22 B 355 ALA PRO ASN LYS PRO HIS GLY VAL ALA HIS TYR ARG ASP SEQRES 23 B 355 LEU ILE THR PHE VAL ALA ASP ARG PRO GLY HIS ASP LEU SEQRES 24 B 355 ARG TYR ALA ILE ASP ALA SER LYS ILE ALA ARG GLU LEU SEQRES 25 B 355 GLY CYS VAL PRO GLN GLU THR PHE GLU SER GLY MET ARG SEQRES 26 B 355 LYS THR VAL GLN TRP TYR LEU ALA ASN GLU SER TRP TRP SEQRES 27 B 355 LYS GLN VAL GLN ASP GLY SER TYR GLN GLY GLU ARG LEU SEQRES 28 B 355 GLY LEU LYS GLY HET NAD A 380 44 HET NAD B 780 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *359(H2 O) HELIX 1 1 PHE A 12 GLU A 24 1 13 HELIX 2 2 LEU A 41 SER A 43 5 3 HELIX 3 3 ARG A 63 HIS A 73 1 11 HELIX 4 4 ALA A 96 ASN A 101 1 6 HELIX 5 5 VAL A 103 ALA A 118 1 16 HELIX 6 6 GLU A 121 ALA A 126 1 6 HELIX 7 7 ASP A 135 TYR A 138 5 4 HELIX 8 8 PRO A 159 TYR A 178 1 20 HELIX 9 9 LEU A 200 LEU A 209 1 10 HELIX 10 10 VAL A 229 THR A 242 1 14 HELIX 11 11 ASN A 259 LEU A 273 1 15 HELIX 12 12 TYR A 284 LEU A 287 5 4 HELIX 13 13 SER A 306 GLU A 311 1 6 HELIX 14 14 PHE A 320 ALA A 333 1 14 HELIX 15 15 GLU A 335 ASP A 343 1 9 HELIX 16 16 SER A 345 GLY A 348 5 4 HELIX 17 17 PHE B 412 GLU B 424 1 13 HELIX 18 18 LEU B 441 SER B 443 5 3 HELIX 19 19 ALA B 445 ALA B 448 1 4 HELIX 20 20 ARG B 463 HIS B 473 1 11 HELIX 21 21 ALA B 496 ASN B 501 1 6 HELIX 22 22 VAL B 503 ALA B 518 1 16 HELIX 23 23 GLU B 521 ALA B 526 1 6 HELIX 24 24 ASP B 535 TYR B 538 5 4 HELIX 25 25 PRO B 559 TYR B 578 1 20 HELIX 26 26 LEU B 600 ALA B 610 1 11 HELIX 27 27 VAL B 629 THR B 642 1 14 HELIX 28 28 ASN B 659 LEU B 673 1 15 HELIX 29 29 TYR B 684 LEU B 687 5 4 HELIX 30 30 SER B 706 LEU B 712 1 7 HELIX 31 31 PHE B 720 ALA B 733 1 14 HELIX 32 32 GLU B 735 ASP B 743 1 9 SHEET 1 A 7 THR A 248 ILE A 251 0 SHEET 2 A 7 THR A 182 CYS A 187 1 N ILE A 184 O TYR A 249 SHEET 3 A 7 ARG A 128 THR A 134 1 N PHE A 129 O LEU A 183 SHEET 4 A 7 CYS A 77 HIS A 80 1 N VAL A 78 O ARG A 128 SHEET 5 A 7 LYS A 3 THR A 7 1 N LEU A 5 O CYS A 77 SHEET 6 A 7 ALA A 28 VAL A 32 1 N ALA A 28 O ILE A 4 SHEET 7 A 7 PHE A 53 GLU A 56 1 N ALA A 54 O VAL A 29 SHEET 1 B 2 ASN A 189 TYR A 191 0 SHEET 2 B 2 TRP A 226 TYR A 228 1 N LEU A 227 O ASN A 189 SHEET 1 C 7 THR B 648 ILE B 651 0 SHEET 2 C 7 THR B 582 CYS B 587 1 N ILE B 584 O TYR B 649 SHEET 3 C 7 ARG B 528 THR B 534 1 N PHE B 529 O LEU B 583 SHEET 4 C 7 CYS B 477 HIS B 480 1 N VAL B 478 O ARG B 528 SHEET 5 C 7 LYS B 403 THR B 407 1 N LEU B 405 O CYS B 477 SHEET 6 C 7 ALA B 428 VAL B 432 1 N ALA B 428 O ILE B 404 SHEET 7 C 7 PHE B 453 GLU B 456 1 N ALA B 454 O VAL B 429 SHEET 1 D 2 ASN B 589 TYR B 591 0 SHEET 2 D 2 TRP B 626 TYR B 628 1 N LEU B 627 O ASN B 589 SHEET 1 E 2 LEU B 614 VAL B 616 0 SHEET 2 E 2 ILE B 688 PHE B 690 1 N THR B 689 O LEU B 614 SITE 1 AC1 34 GLY A 8 ALA A 10 GLY A 11 PHE A 12 SITE 2 AC1 34 ILE A 13 ASP A 33 LYS A 34 LEU A 35 SITE 3 AC1 34 THR A 36 ALA A 38 GLY A 39 VAL A 58 SITE 4 AC1 34 ASP A 59 ILE A 60 LEU A 81 ALA A 83 SITE 5 AC1 34 THR A 100 ILE A 132 SER A 133 THR A 134 SITE 6 AC1 34 TYR A 160 LYS A 164 CYS A 187 SER A 188 SITE 7 AC1 34 ASN A 189 ASN A 190 HOH A 381 HOH A 382 SITE 8 AC1 34 HOH A 383 HOH A 386 HOH A 387 HOH A 395 SITE 9 AC1 34 HOH A 479 HOH A 491 SITE 1 AC2 34 HOH B 14 HOH B 18 HOH B 25 HOH B 53 SITE 2 AC2 34 HOH B 65 HOH B 69 HOH B 92 HOH B 194 SITE 3 AC2 34 HOH B 201 GLY B 408 ALA B 410 GLY B 411 SITE 4 AC2 34 PHE B 412 ILE B 413 ASP B 433 LYS B 434 SITE 5 AC2 34 LEU B 435 THR B 436 ALA B 438 GLY B 439 SITE 6 AC2 34 VAL B 458 ASP B 459 ILE B 460 LEU B 481 SITE 7 AC2 34 ALA B 483 THR B 500 ILE B 532 SER B 533 SITE 8 AC2 34 THR B 534 TYR B 560 LYS B 564 CYS B 587 SITE 9 AC2 34 SER B 588 ASN B 590 CRYST1 68.400 109.200 128.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014620 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007770 0.00000