HEADER OXIDOREDUCTASE 20-OCT-98 1BYT OBSLTE 03-JUN-03 1BYT 1NO3 TITLE LIPOXYGENASE-3 (SOYBEAN) COMPLEX WITH 4-NITROCATECHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOXYGENASE-3; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: COMPLEX WITH 4-NITROCATECHOL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 STRAIN: PROVAR CULTIVAR KEYWDS OXIDOREDUCTASE, METALLOPROTEIN, FE(II) COMPLEX, CATECHOL EXPDTA X-RAY DIFFRACTION AUTHOR E.SKRZYPCZAK-JANKUN REVDAT 3 01-APR-03 1BYT 1 JRNL REVDAT 2 11-MAY-99 1BYT 3 HET REMARK TITLE HETATM REVDAT 2 2 3 DBREF SEQADV HEADER LINK REVDAT 2 3 3 FORMUL SITE JRNL KEYWDS REVDAT 2 4 3 SHEET HELIX HETSYN CONECT REVDAT 2 5 3 HETNAM REVDAT 1 02-FEB-99 1BYT 0 JRNL AUTH C.PHAM,J.JANKUN,E.SKRZYPCZAK-JANKUN, JRNL AUTH 2 R.A.FLOWERS 2ND.,M.O.FUNK JR. JRNL TITL STRUCTURAL AND THERMOCHEMICAL CHARACTERIZATION OF JRNL TITL 2 LIPOXYGENASE-CATECHOL COMPLEXES. JRNL REF BIOCHEMISTRY V. 37 17952 1998 JRNL REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.SKRZYPCZAK-JANKUN,L.M.AMZEL,B.A.KROA, REMARK 1 AUTH 2 M.O.FUNK JUNIOR REMARK 1 TITL STRUCTURE OF SOYBEAN LIPOXYGENASE L3 AND A REMARK 1 TITL 2 COMPARISON WITH ITS L1 ISOENZYME REMARK 1 REF PROTEINS: STRUCT.,FUNCT., V. 29 15 1997 REMARK 1 REF 2 GENET. REMARK 1 REFN ASTM PSFGEY US ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.SKRZYPCZAK-JANKUN,M.O.FUNK JUNIOR,J.C.BOYINGTON, REMARK 1 AUTH 2 L.M.AMZEL REMARK 1 TITL LIPOXYGENASE-A MOLECULAR COMPLEX WITH A NON-HEME REMARK 1 TITL 2 IRON REMARK 1 REF J.MOL.STRUCT. V. 374 47 1996 REMARK 1 REFN ASTM JMOSB4 NE ISSN 0022-2860 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.A.KRAMER,K.R.JOHNSON,W.R.DUNHAM,R.H.SANDS, REMARK 1 AUTH 2 M.O.FUNK JUNIOR REMARK 1 TITL POSITION 713 IS CRITICAL FOR CATALYSIS BUT NOT REMARK 1 TITL 2 IRON BINDING IN SOYBEAN LIPOXYGENASE 3 REMARK 1 REF BIOCHEMISTRY V. 33 15017 1994 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 10.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 41149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4209 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3003 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 331 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6686 REMARK 3 NUCLEIC ACID ATOMS : NULL REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.30 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.500 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARHWAT.FE REMARK 3 PARAMETER FILE 3 : 4NC-EWA.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPHWAT.FE REMARK 3 TOPOLOGY FILE 3 : 4NC-EWA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FILES *WAT.FE AND 4NC*.* WERE REMARK 3 CREATED FOR WATER, IRON AND 4-NITROCATECHOL REMARK 4 REMARK 4 1BYT COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 DISORDERED REGIONS 1-8 AND 33-45 WERE OMITTED FROM REMARK 6 CALCULATIONS. THE QUESTION FOR THIS STUDY WAS HOW AND WHERE REMARK 6 CATECHOL MOIETY IS BINDING AND IT HAS BEEN ANSWERED. NO REMARK 6 ATTEMPT HAS BEEN MADE TO REFINE SOLVENT STRUCTURE EXCEPT REMARK 6 FOR THE IMMEDIATE VICINITY OF IRON, THAT IS RELEVANT TO REMARK 6 THIS STUDY. SOLVENT STRUCTURE HAS BEEN DESCRIBED IN PDB REMARK 6 ENTRIES 1LNH (FOR L3) AND 1YGE (FOR L1). REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-1997 REMARK 200 TEMPERATURE (KELVIN) : 296.0 REMARK 200 PH : 5.30 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU/MSC RU-H2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50343 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1LNH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 1/2+X,1/2+Y,Z REMARK 290 4555 1/2-X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.45000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.45000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 68.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 HIS A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 ILE A 35 REMARK 465 ILE A 36 REMARK 465 GLY A 37 REMARK 465 GLN A 38 REMARK 465 GLY A 39 REMARK 465 LEU A 40 REMARK 465 ASP A 41 REMARK 465 LEU A 42 REMARK 465 VAL A 43 REMARK 465 GLY A 44 REMARK 465 SER A 45 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 31 C VAL A 32 N 0.299 REMARK 500 CYS A 511 CB CYS A 511 SG -0.060 REMARK 500 THR A 522 CB THR A 522 CG2 -0.046 REMARK 500 MET A 585 SD MET A 585 CE -0.090 REMARK 500 MET A 734 SD MET A 734 CE -0.049 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 31 O - C - N ANGL. DEV. =-21.4 DEGREES REMARK 500 THR A 46 N - CA - C ANGL. DEV. =-11.4 DEGREES REMARK 500 GLY A 72 N - CA - C ANGL. DEV. = 10.1 DEGREES REMARK 500 ILE A 86 N - CA - C ANGL. DEV. = -9.7 DEGREES REMARK 500 THR A 87 N - CA - C ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP A 134 N - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 PHE A 155 N - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 THR A 172 N - CA - C ANGL. DEV. = 10.0 DEGREES REMARK 500 LEU A 210 N - CA - C ANGL. DEV. = 9.8 DEGREES REMARK 500 THR A 238 N - CA - C ANGL. DEV. =-14.3 DEGREES REMARK 500 LEU A 258 N - CA - C ANGL. DEV. =-10.5 DEGREES REMARK 500 SER A 269 N - CA - C ANGL. DEV. =-10.0 DEGREES REMARK 500 LEU A 376 N - CA - C ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 431 N - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 ALA A 449 N - CA - C ANGL. DEV. =-10.2 DEGREES REMARK 500 THR A 450 N - CA - C ANGL. DEV. = 9.9 DEGREES REMARK 500 HIS A 473 N - CA - C ANGL. DEV. = 10.5 DEGREES REMARK 500 GLN A 478 N - CA - C ANGL. DEV. =-10.0 DEGREES REMARK 500 HIS A 548 N - CA - C ANGL. DEV. = 10.5 DEGREES REMARK 500 VAL A 623 N - CA - C ANGL. DEV. =-14.1 DEGREES REMARK 500 LEU A 671 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 691 N - CA - C ANGL. DEV. =-11.7 DEGREES REMARK 500 ASN A 713 N - CA - C ANGL. DEV. = 10.2 DEGREES REMARK 500 LEU A 722 N - CA - C ANGL. DEV. = -9.8 DEGREES REMARK 500 LEU A 729 CA - CB - CG ANGL. DEV. = 10.8 DEGREES REMARK 500 ASP A 787 N - CA - C ANGL. DEV. =-11.4 DEGREES REMARK 500 TRP A 791 N - CA - C ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 825 N - CA - C ANGL. DEV. = 9.7 DEGREES REMARK 500 GLY A 845 N - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 78 124.87 10.21 REMARK 500 LEU A 89 130.53 71.94 REMARK 500 ASP A 190 165.07 67.34 REMARK 500 VAL A 330 -38.47 77.18 REMARK 500 GLU A 333 -42.21 76.61 REMARK 500 VAL A 393 -39.28 57.08 REMARK 500 GLU A 692 -32.78 78.15 REMARK 500 GLU A 844 -90.51 -175.18 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: KABSCH & SANDER REMARK 650 HELIX_ID: H11,INTERNAL PI-HELIX 516-520, KINK 521-522. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: KABSCH & SANDER REMARK 700 STRAND: S1 1; N-TERMINAL 8-STRANDED BETA BARREL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: FE2 REMARK 800 SITE_DESCRIPTION: IRON (FE+2) ACTIVE SITE REMARK 860 REMARK 860 CORRECTION AFTER RELEASE REMARK 860 DATE: 11-MAY-99 REMARK 860 MODID: 1BYTA REMARK 860 MODIFIED BY: PDB REMARK 860 DESCRIPTION: CONVERTED FROM LAYER 1 OR NDB TO LAYER 2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 1BYT GB 1794171 1 - 8 NOT IN ATOMS LIST DBREF 1BYT A 1 857 GB 1794172 AAB41272 1 857 SEQRES 1 A 857 MET LEU GLY GLY LEU LEU HIS ARG GLY HIS LYS ILE LYS SEQRES 2 A 857 GLY THR VAL VAL LEU MET ARG LYS ASN VAL LEU ASP VAL SEQRES 3 A 857 ASN SER VAL THR SER VAL GLY GLY ILE ILE GLY GLN GLY SEQRES 4 A 857 LEU ASP LEU VAL GLY SER THR LEU ASP THR LEU THR ALA SEQRES 5 A 857 PHE LEU GLY ARG SER VAL SER LEU GLN LEU ILE SER ALA SEQRES 6 A 857 THR LYS ALA ASP ALA ASN GLY LYS GLY LYS LEU GLY LYS SEQRES 7 A 857 ALA THR PHE LEU GLU GLY ILE ILE THR SER LEU PRO THR SEQRES 8 A 857 LEU GLY ALA GLY GLN SER ALA PHE LYS ILE ASN PHE GLU SEQRES 9 A 857 TRP ASP ASP GLY SER GLY ILE PRO GLY ALA PHE TYR ILE SEQRES 10 A 857 LYS ASN PHE MET GLN THR GLU PHE PHE LEU VAL SER LEU SEQRES 11 A 857 THR LEU GLU ASP ILE PRO ASN HIS GLY SER ILE HIS PHE SEQRES 12 A 857 VAL CYS ASN SER TRP ILE TYR ASN ALA LYS LEU PHE LYS SEQRES 13 A 857 SER ASP ARG ILE PHE PHE ALA ASN GLN THR TYR LEU PRO SEQRES 14 A 857 SER GLU THR PRO ALA PRO LEU VAL LYS TYR ARG GLU GLU SEQRES 15 A 857 GLU LEU HIS ASN LEU ARG GLY ASP GLY THR GLY GLU ARG SEQRES 16 A 857 LYS GLU TRP GLU ARG ILE TYR ASP TYR ASP VAL TYR ASN SEQRES 17 A 857 ASP LEU GLY ASP PRO ASP LYS GLY GLU ASN HIS ALA ARG SEQRES 18 A 857 PRO VAL LEU GLY GLY ASN ASP THR PHE PRO TYR PRO ARG SEQRES 19 A 857 ARG GLY ARG THR GLY ARG LYS PRO THR ARG LYS ASP PRO SEQRES 20 A 857 ASN SER GLU SER ARG SER ASN ASP VAL TYR LEU PRO ARG SEQRES 21 A 857 ASP GLU ALA PHE GLY HIS LEU LYS SER SER ASP PHE LEU SEQRES 22 A 857 THR TYR GLY LEU LYS SER VAL SER GLN ASN VAL LEU PRO SEQRES 23 A 857 LEU LEU GLN SER ALA PHE ASP LEU ASN PHE THR PRO ARG SEQRES 24 A 857 GLU PHE ASP SER PHE ASP GLU VAL HIS GLY LEU TYR SER SEQRES 25 A 857 GLY GLY ILE LYS LEU PRO THR ASP ILE ILE SER LYS ILE SEQRES 26 A 857 SER PRO LEU PRO VAL LEU LYS GLU ILE PHE ARG THR ASP SEQRES 27 A 857 GLY GLU GLN ALA LEU LYS PHE PRO PRO PRO LYS VAL ILE SEQRES 28 A 857 GLN VAL SER LYS SER ALA TRP MET THR ASP GLU GLU PHE SEQRES 29 A 857 ALA ARG GLU MET LEU ALA GLY VAL ASN PRO ASN LEU ILE SEQRES 30 A 857 ARG CYS LEU LYS ASP PHE PRO PRO ARG SER LYS LEU ASP SEQRES 31 A 857 SER GLN VAL TYR GLY ASP HIS THR SER GLN ILE THR LYS SEQRES 32 A 857 GLU HIS LEU GLU PRO ASN LEU GLU GLY LEU THR VAL ASP SEQRES 33 A 857 GLU ALA ILE GLN ASN LYS ARG LEU PHE LEU LEU ASP HIS SEQRES 34 A 857 HIS ASP PRO ILE MET PRO TYR LEU ARG ARG ILE ASN ALA SEQRES 35 A 857 THR SER THR LYS ALA TYR ALA THR ARG THR ILE LEU PHE SEQRES 36 A 857 LEU LYS ASN ASP GLY THR LEU ARG PRO LEU ALA ILE GLU SEQRES 37 A 857 LEU SER LEU PRO HIS PRO GLN GLY ASP GLN SER GLY ALA SEQRES 38 A 857 PHE SER GLN VAL PHE LEU PRO ALA ASP GLU GLY VAL GLU SEQRES 39 A 857 SER SER ILE TRP LEU LEU ALA LYS ALA TYR VAL VAL VAL SEQRES 40 A 857 ASN ASP SER CYS TYR HIS GLN LEU VAL SER HIS TRP LEU SEQRES 41 A 857 ASN THR HIS ALA VAL VAL GLU PRO PHE ILE ILE ALA THR SEQRES 42 A 857 ASN ARG HIS LEU SER VAL VAL HIS PRO ILE TYR LYS LEU SEQRES 43 A 857 LEU HIS PRO HIS TYR ARG ASP THR MET ASN ILE ASN GLY SEQRES 44 A 857 LEU ALA ARG LEU SER LEU VAL ASN ASP GLY GLY VAL ILE SEQRES 45 A 857 GLU GLN THR PHE LEU TRP GLY ARG TYR SER VAL GLU MET SEQRES 46 A 857 SER ALA VAL VAL TYR LYS ASP TRP VAL PHE THR ASP GLN SEQRES 47 A 857 ALA LEU PRO ALA ASP LEU ILE LYS ARG GLY MET ALA ILE SEQRES 48 A 857 GLU ASP PRO SER CYS PRO HIS GLY ILE ARG LEU VAL ILE SEQRES 49 A 857 GLU ASP TYR PRO TYR THR VAL ASP GLY LEU GLU ILE TRP SEQRES 50 A 857 ASP ALA ILE LYS THR TRP VAL HIS GLU TYR VAL PHE LEU SEQRES 51 A 857 TYR TYR LYS SER ASP ASP THR LEU ARG GLU ASP PRO GLU SEQRES 52 A 857 LEU GLN ALA CYS TRP LYS GLU LEU VAL GLU VAL GLY HIS SEQRES 53 A 857 GLY ASP LYS LYS ASN GLU PRO TRP TRP PRO LYS MET GLN SEQRES 54 A 857 THR ARG GLU GLU LEU VAL GLU ALA CYS ALA ILE ILE ILE SEQRES 55 A 857 TRP THR ALA SER ALA LEU HIS ALA ALA VAL ASN PHE GLY SEQRES 56 A 857 GLN TYR PRO TYR GLY GLY LEU ILE LEU ASN ARG PRO THR SEQRES 57 A 857 LEU SER ARG ARG PHE MET PRO GLU LYS GLY SER ALA GLU SEQRES 58 A 857 TYR GLU GLU LEU ARG LYS ASN PRO GLN LYS ALA TYR LEU SEQRES 59 A 857 LYS THR ILE THR PRO LYS PHE GLN THR LEU ILE ASP LEU SEQRES 60 A 857 SER VAL ILE GLU ILE LEU SER ARG HIS ALA SER ASP GLU SEQRES 61 A 857 VAL TYR LEU GLY GLU ARG ASP ASN PRO ASN TRP THR SER SEQRES 62 A 857 ASP THR ARG ALA LEU GLU ALA PHE LYS ARG PHE GLY ASN SEQRES 63 A 857 LYS LEU ALA GLN ILE GLU ASN LYS LEU SER GLU ARG ASN SEQRES 64 A 857 ASN ASP GLU LYS LEU ARG ASN ARG CYS GLY PRO VAL GLN SEQRES 65 A 857 MET PRO TYR THR LEU LEU LEU PRO SER SER LYS GLU GLY SEQRES 66 A 857 LEU THR PHE ARG GLY ILE PRO ASN SER ILE SER ILE HET FE2 858 1 HET 4NC 860 11 HETNAM FE2 FE (II) ION HETNAM 4NC 4-NITROCATECHOL FORMUL 2 FE2 FE 2+ FORMUL 3 4NC C6 H5 N O4 FORMUL 4 HOH *(H2 O1) HELIX 1 H1 LYS A 21 LEU A 24 1 4 HELIX 2 H2 VAL A 26 VAL A 29 1 4 HELIX 3 H3 ALA A 174 ARG A 188 1 15 HELIX 4 H4 LEU A 273 PHE A 292 1 20 HELIX 5 H5 PHE A 304 HIS A 308 1 5 HELIX 6 H6 THR A 319 ILE A 322 1 4 HELIX 7 H7 LYS A 349 GLN A 352 1 4 HELIX 8 H8 ASP A 361 ALA A 370 1 10 HELIX 9 H9 VAL A 415 GLN A 420 1 6 HELIX 10 H10 HIS A 430 ILE A 440 1 11 HELIX 11 H11 GLY A 492 HIS A 536 1SEE REMARK 650 45 HELIX 12 H12 PRO A 542 LEU A 547 1 6 HELIX 13 H13 THR A 554 SER A 564 1 11 HELIX 14 H14 VAL A 571 THR A 575 1 5 HELIX 15 H15 SER A 582 TYR A 590 1 9 HELIX 16 H16 LEU A 600 LYS A 606 1 7 HELIX 17 H17 PRO A 628 VAL A 648 1 21 HELIX 18 H18 ASP A 655 GLU A 660 1 6 HELIX 19 H19 PRO A 662 GLU A 673 1 12 HELIX 20 H20 GLU A 693 GLY A 720 1KINK AT 706 AND 714-715 28 HELIX 21 H21 ALA A 740 LYS A 747 1 8 HELIX 22 H22 PRO A 749 LEU A 754 1 6 HELIX 23 H23 LYS A 760 LEU A 773 1 14 HELIX 24 H24 THR A 795 ARG A 818 1 24 SHEET 1 A 8 HIS A 10 ARG A 20 0 SHEET 2 A 8 GLN A 96 TRP A 105 -1 SHEET 3 A 8 LEU A 76 PHE A 81 -1 SHEET 4 A 8 VAL A 58 SER A 64 -1 SHEET 5 A 8 PRO A 112 ASN A 119 -1 SHEET 6 A 8 ARG A 159 PHE A 162 -1 SHEET 7 A 8 ILE A 141 ILE A 149 -1 SHEET 8 A 8 PHE A 125 GLU A 133 -1 SHEET 1 B 2 TYR A 204 ASP A 205 0 SHEET 2 B 2 ARG A 235 GLY A 236 -1 SHEET 1 C 5 ARG A 378 CYS A 379 0 SHEET 2 C 5 LEU A 424 ASP A 428 -1 SHEET 3 C 5 ALA A 449 LEU A 456 -1 SHEET 4 C 5 LEU A 462 LEU A 471 -1 SHEET 5 C 5 PHE A 482 PHE A 486 -1 SHEET 1 D 2 MET A 609 ILE A 611 0 SHEET 2 D 2 ARG A 621 VAL A 623 -1 LINK FE FE2 858 NE2 HIS A 523 LINK FE FE2 858 NE2 HIS A 709 LINK FE FE2 858 OXT ILE A 857 LINK FE FE2 858 O HOH 900 CISPEP 1 PHE A 383 PRO A 384 0 -0.11 SITE 1 FE2 5 FE2 858 HIS A 523 HIS A 709 ILE A 857 SITE 2 FE2 5 HOH 900 CRYST1 112.900 137.500 61.900 90.00 95.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008857 0.000000 0.000853 0.00000 SCALE2 0.000000 0.007273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016230 0.00000