data_1BYX # _entry.id 1BYX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BYX pdb_00001byx 10.2210/pdb1byx/pdb RCSB RCSB007043 ? ? WWPDB D_1000007043 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-10-20 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BYX _pdbx_database_status.recvd_initial_deposition_date 1998-10-20 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Szyperski, T.' 1 'Goette, M.' 2 'Billeter, M.' 3 'Perola, E.' 4 'Cellai, L.' 5 # _citation.id primary _citation.title ;NMR structure of the chimeric hybrid duplex r(gcaguggc).r(gcca)d(CTGC) comprising the tRNA-DNA junction formed during initiation of HIV-1 reverse transcription. ; _citation.journal_abbrev J.Biomol.NMR _citation.journal_volume 13 _citation.page_first 343 _citation.page_last 355 _citation.year 1999 _citation.journal_id_ASTM JBNME9 _citation.country NE _citation.journal_id_ISSN 0925-2738 _citation.journal_id_CSD 0800 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10353196 _citation.pdbx_database_id_DOI 10.1023/A:1008350604637 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Szyperski, T.' 1 ? primary 'Gotte, M.' 2 ? primary 'Billeter, M.' 3 ? primary 'Perola, E.' 4 ? primary 'Cellai, L.' 5 ? primary 'Heumann, H.' 6 ? primary 'Wuthrich, K.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*AP*GP*UP*GP*GP*C)-3') ; 2581.601 1 ? ? ? ? 2 polymer syn ;DNA/RNA (5'-R(*GP*CP*CP*A)-D(P*CP*TP*GP*C)-3') ; 2451.580 1 ? ? ? 'CHIMERIC HYBRID RNA/RNA-DNA DUPLEX' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCAGUGGC GCAGUGGC A ? 2 'polydeoxyribonucleotide/polyribonucleotide hybrid' no no 'GCCA(DC)(DT)(DG)(DC)' GCCACTGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 U n 1 6 G n 1 7 G n 1 8 C n 2 1 G n 2 2 C n 2 3 C n 2 4 A n 2 5 DC n 2 6 DT n 2 7 DG n 2 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;THE RNA:RNA-DNA CHIMERIC HYBRID DUPLEX WAS CHEMICALLY SYNTHESIZED FROM THE HUMAN IMMUNODIFICIENCY VIRUS TYPE 1 (HIV-1). THE DUPLEX IS FORMED DURING THE INITIATION OF (-)DNA STRAND SYNTHESIS IN HIV-1 REPLICATION. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n B 2 1 G 1 101 101 G G B . n B 2 2 C 2 102 102 C C B . n B 2 3 C 3 103 103 C C B . n B 2 4 A 4 104 104 A A B . n B 2 5 DC 5 105 105 DC C B . n B 2 6 DT 6 106 106 DT T B . n B 2 7 DG 7 107 107 DG G B . n B 2 8 DC 8 108 108 DC C B . n # _cell.entry_id 1BYX _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BYX _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1BYX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1BYX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1BYX _struct.title ;CHIMERIC HYBRID DUPLEX R(GCAGUGGC).R(GCCA)D(CTGC) COMPRISING THE TRNA-DNA JUNCTION FORMED DURING INITIATION OF HIV-1 REVERSE TRANSCRIPTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BYX _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'RNA:RNA-DNA CHIMERIC HYBRID, RNASE H, REVERSE TRANSCRIPTASE, DNA-RNA COMPLEX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1BYX 1BYX ? ? ? 2 2 PDB 1BYX 1BYX ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BYX A 1 ? 8 ? 1BYX 1 ? 8 ? 1 8 2 2 1BYX B 1 ? 8 ? 1BYX 101 ? 108 ? 101 108 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? A C 2 B DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? A C 2 B DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? A C 2 B DG 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 6 N3 ? ? A A 3 B DT 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 6 O4 ? ? A A 3 B DT 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A G 4 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A G 4 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A G 4 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 5 B A 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 5 B A 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 6 B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 6 B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 6 B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7 B C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7 B C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7 B C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 101 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A G 7 ? ? "HO3'" A C 8 ? ? 1.56 2 15 "HO5'" B G 101 ? ? OP2 B C 102 ? ? 1.59 3 18 OP2 A G 7 ? ? "HO3'" A C 8 ? ? 1.54 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 115.34 108.50 6.84 0.70 N 2 1 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.71 108.50 4.21 0.70 N 3 1 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.50 108.50 5.00 0.70 N 4 1 "O4'" B G 101 ? ? "C1'" B G 101 ? ? N9 B G 101 ? ? 112.70 108.50 4.20 0.70 N 5 1 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 115.35 108.50 6.85 0.70 N 6 1 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.35 108.50 4.85 0.70 N 7 1 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 114.87 108.30 6.57 0.30 N 8 1 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.34 108.30 4.04 0.30 N 9 1 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 112.31 108.30 4.01 0.30 N 10 1 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 111.07 108.30 2.77 0.30 N 11 2 "C3'" A C 2 ? ? "C2'" A C 2 ? ? "C1'" A C 2 ? ? 106.39 101.50 4.89 0.80 N 12 2 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.32 108.50 4.82 0.70 N 13 2 N1 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 122.71 118.90 3.81 0.60 N 14 2 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.37 108.50 4.87 0.70 N 15 2 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.16 108.50 4.66 0.70 N 16 2 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.99 108.50 5.49 0.70 N 17 2 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 114.53 108.30 6.23 0.30 N 18 2 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.33 108.30 4.03 0.30 N 19 2 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 111.05 108.30 2.75 0.30 N 20 2 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 114.37 108.30 6.07 0.30 N 21 3 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.34 108.50 4.84 0.70 N 22 3 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 115.66 119.90 -4.24 0.70 N 23 3 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 116.58 108.50 8.08 0.70 N 24 3 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 112.86 108.50 4.36 0.70 N 25 3 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.60 108.50 5.10 0.70 N 26 3 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 112.24 108.30 3.94 0.30 N 27 3 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 113.43 108.30 5.13 0.30 N 28 3 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 110.25 108.30 1.95 0.30 N 29 4 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 114.96 119.90 -4.94 0.70 N 30 4 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 115.30 108.50 6.80 0.70 N 31 4 "O4'" A A 3 ? ? "C1'" A A 3 ? ? N9 A A 3 ? ? 113.11 108.50 4.61 0.70 N 32 4 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.70 108.50 4.20 0.70 N 33 4 "C5'" A G 6 ? ? "C4'" A G 6 ? ? "O4'" A G 6 ? ? 115.56 109.80 5.76 0.90 N 34 4 N1 B C 102 ? ? C2 B C 102 ? ? O2 B C 102 ? ? 122.79 118.90 3.89 0.60 N 35 4 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 113.44 108.30 5.14 0.30 N 36 4 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 113.99 108.30 5.69 0.30 N 37 4 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 113.78 108.30 5.48 0.30 N 38 4 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 111.51 108.30 3.21 0.30 N 39 4 N1 B DC 108 ? ? C2 B DC 108 ? ? O2 B DC 108 ? ? 122.65 118.90 3.75 0.60 N 40 5 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.66 108.50 5.16 0.70 N 41 5 "C5'" A A 3 ? ? "C4'" A A 3 ? ? "O4'" A A 3 ? ? 115.54 109.80 5.74 0.90 N 42 5 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 114.51 108.50 6.01 0.70 N 43 5 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 112.79 108.50 4.29 0.70 N 44 5 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 114.27 108.50 5.77 0.70 N 45 5 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.93 108.50 5.43 0.70 N 46 5 "C4'" B DC 105 ? ? "C3'" B DC 105 ? ? "C2'" B DC 105 ? ? 97.91 102.20 -4.29 0.70 N 47 5 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 112.18 108.30 3.88 0.30 N 48 5 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 113.30 108.30 5.00 0.30 N 49 5 C6 B DT 106 ? ? C5 B DT 106 ? ? C7 B DT 106 ? ? 119.14 122.90 -3.76 0.60 N 50 5 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 111.81 108.30 3.51 0.30 N 51 5 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 114.16 108.30 5.86 0.30 N 52 6 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.66 108.50 6.16 0.70 N 53 6 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 115.32 119.90 -4.58 0.70 N 54 6 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 113.11 108.50 4.61 0.70 N 55 6 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 113.17 108.30 4.87 0.30 N 56 6 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 111.41 108.30 3.11 0.30 N 57 6 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 112.58 108.30 4.28 0.30 N 58 6 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 113.74 108.30 5.44 0.30 N 59 7 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.50 108.50 6.00 0.70 N 60 7 N1 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 123.68 118.90 4.78 0.60 N 61 7 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 112.85 108.50 4.35 0.70 N 62 7 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.01 108.50 4.51 0.70 N 63 7 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 114.17 108.50 5.67 0.70 N 64 7 "O4'" B A 104 ? ? "C1'" B A 104 ? ? N9 B A 104 ? ? 113.05 108.50 4.55 0.70 N 65 7 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 113.67 108.30 5.37 0.30 N 66 7 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.20 108.30 3.90 0.30 N 67 7 C6 B DT 106 ? ? C5 B DT 106 ? ? C7 B DT 106 ? ? 119.12 122.90 -3.78 0.60 N 68 7 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 111.68 108.30 3.38 0.30 N 69 7 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 113.48 108.30 5.18 0.30 N 70 7 N1 B DC 108 ? ? C2 B DC 108 ? ? O2 B DC 108 ? ? 122.83 118.90 3.93 0.60 N 71 7 N3 B DC 108 ? ? C2 B DC 108 ? ? O2 B DC 108 ? ? 117.49 121.90 -4.41 0.70 N 72 8 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.61 108.50 6.11 0.70 N 73 8 "C5'" A A 3 ? ? "C4'" A A 3 ? ? "O4'" A A 3 ? ? 115.60 109.80 5.80 0.90 N 74 8 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 113.87 108.50 5.37 0.70 N 75 8 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.51 108.50 5.01 0.70 N 76 8 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 114.09 108.30 5.79 0.30 N 77 8 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 114.63 108.30 6.33 0.30 N 78 8 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 111.91 108.30 3.61 0.30 N 79 8 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 115.48 108.30 7.18 0.30 N 80 9 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.98 108.50 5.48 0.70 N 81 9 "C5'" A A 3 ? ? "C4'" A A 3 ? ? "O4'" A A 3 ? ? 116.45 109.80 6.65 0.90 N 82 9 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.98 108.50 4.48 0.70 N 83 9 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 114.03 108.50 5.53 0.70 N 84 9 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.71 108.50 5.21 0.70 N 85 9 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 113.43 108.30 5.13 0.30 N 86 9 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 113.19 108.30 4.89 0.30 N 87 9 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 114.08 108.30 5.78 0.30 N 88 9 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 114.36 108.30 6.06 0.30 N 89 9 N3 B DC 108 ? ? C2 B DC 108 ? ? O2 B DC 108 ? ? 117.70 121.90 -4.20 0.70 N 90 10 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 113.06 108.50 4.56 0.70 N 91 10 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 115.64 119.90 -4.26 0.70 N 92 10 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.68 108.50 6.18 0.70 N 93 10 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 113.59 108.50 5.09 0.70 N 94 10 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 115.48 119.90 -4.42 0.70 N 95 10 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 112.79 108.50 4.29 0.70 N 96 10 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 112.97 108.50 4.47 0.70 N 97 10 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 115.20 108.50 6.70 0.70 N 98 10 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.66 108.50 5.16 0.70 N 99 10 N3 B C 103 ? ? C2 B C 103 ? ? O2 B C 103 ? ? 117.65 121.90 -4.25 0.70 N 100 10 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 114.10 108.30 5.80 0.30 N 101 10 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 113.09 108.30 4.79 0.30 N 102 10 C6 B DT 106 ? ? C5 B DT 106 ? ? C7 B DT 106 ? ? 119.05 122.90 -3.85 0.60 N 103 10 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 111.89 108.30 3.59 0.30 N 104 11 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 112.94 108.50 4.44 0.70 N 105 11 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.24 108.50 5.74 0.70 N 106 11 N1 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 122.96 118.90 4.06 0.60 N 107 11 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.62 121.90 -4.28 0.70 N 108 11 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.35 108.50 4.85 0.70 N 109 11 "C5'" A G 7 ? ? "C4'" A G 7 ? ? "O4'" A G 7 ? ? 115.73 109.80 5.93 0.90 N 110 11 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 112.88 108.50 4.38 0.70 N 111 11 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.16 108.50 4.66 0.70 N 112 11 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 113.09 108.30 4.79 0.30 N 113 11 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 113.15 108.30 4.85 0.30 N 114 11 C6 B DT 106 ? ? C5 B DT 106 ? ? C7 B DT 106 ? ? 119.11 122.90 -3.79 0.60 N 115 11 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 112.90 108.30 4.60 0.30 N 116 11 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 112.66 108.30 4.36 0.30 N 117 12 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.39 108.50 5.89 0.70 N 118 12 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 114.91 119.90 -4.99 0.70 N 119 12 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.01 108.50 4.51 0.70 N 120 12 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.09 108.50 4.59 0.70 N 121 12 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 114.07 108.50 5.57 0.70 N 122 12 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.52 108.50 5.02 0.70 N 123 12 "O4'" B A 104 ? ? "C1'" B A 104 ? ? N9 B A 104 ? ? 112.93 108.50 4.43 0.70 N 124 12 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 112.33 108.30 4.03 0.30 N 125 12 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 113.92 108.30 5.62 0.30 N 126 12 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 112.64 108.30 4.34 0.30 N 127 12 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 114.80 108.30 6.50 0.30 N 128 13 N1 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 123.05 118.90 4.15 0.60 N 129 13 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 115.50 108.50 7.00 0.70 N 130 13 N3 A G 4 ? ? C2 A G 4 ? ? N2 A G 4 ? ? 115.65 119.90 -4.25 0.70 N 131 13 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.56 108.50 5.06 0.70 N 132 13 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 112.72 108.50 4.22 0.70 N 133 13 "O4'" B G 101 ? ? "C1'" B G 101 ? ? N9 B G 101 ? ? 114.01 108.50 5.51 0.70 N 134 13 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 113.79 108.50 5.29 0.70 N 135 13 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.25 108.50 4.75 0.70 N 136 13 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 111.50 108.30 3.20 0.30 N 137 13 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.20 108.30 3.90 0.30 N 138 13 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 114.61 108.30 6.31 0.30 N 139 14 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 115.05 108.50 6.55 0.70 N 140 14 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 117.46 121.90 -4.44 0.70 N 141 14 "O4'" B G 101 ? ? "C1'" B G 101 ? ? N9 B G 101 ? ? 112.82 108.50 4.32 0.70 N 142 14 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 115.00 108.50 6.50 0.70 N 143 14 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 113.85 108.30 5.55 0.30 N 144 14 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.59 108.30 4.29 0.30 N 145 14 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 111.92 108.30 3.62 0.30 N 146 14 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 111.58 108.30 3.28 0.30 N 147 15 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.16 108.50 4.66 0.70 N 148 15 "C5'" A A 3 ? ? "C4'" A A 3 ? ? "O4'" A A 3 ? ? 115.64 109.80 5.84 0.90 N 149 15 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 115.32 108.50 6.82 0.70 N 150 15 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 114.07 108.50 5.57 0.70 N 151 15 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 114.66 108.50 6.16 0.70 N 152 15 "C4'" B DC 105 ? ? "C3'" B DC 105 ? ? "C2'" B DC 105 ? ? 97.84 102.20 -4.36 0.70 N 153 15 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 112.15 108.30 3.85 0.30 N 154 15 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 114.54 108.30 6.24 0.30 N 155 15 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 111.60 108.30 3.30 0.30 N 156 16 "C3'" A C 2 ? ? "C2'" A C 2 ? ? "C1'" A C 2 ? ? 106.73 101.50 5.23 0.80 N 157 16 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.59 108.50 6.09 0.70 N 158 16 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.26 108.50 4.76 0.70 N 159 16 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.42 108.50 4.92 0.70 N 160 16 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 113.71 108.30 5.41 0.30 N 161 16 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.58 108.30 4.28 0.30 N 162 16 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 113.94 108.30 5.64 0.30 N 163 17 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 112.87 108.50 4.37 0.70 N 164 17 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 115.96 108.50 7.46 0.70 N 165 17 "O4'" A A 3 ? ? "C1'" A A 3 ? ? N9 A A 3 ? ? 113.44 108.50 4.94 0.70 N 166 17 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.22 108.50 4.72 0.70 N 167 17 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 113.76 108.50 5.26 0.70 N 168 17 "O4'" B C 102 ? ? "C1'" B C 102 ? ? N1 B C 102 ? ? 113.11 108.50 4.61 0.70 N 169 17 N3 B C 102 ? ? C2 B C 102 ? ? O2 B C 102 ? ? 117.61 121.90 -4.29 0.70 N 170 17 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 114.25 108.50 5.75 0.70 N 171 17 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 113.85 108.30 5.55 0.30 N 172 17 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 111.73 108.30 3.43 0.30 N 173 17 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 110.91 108.30 2.61 0.30 N 174 17 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 110.16 108.30 1.86 0.30 N 175 18 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 114.12 108.50 5.62 0.70 N 176 18 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.45 108.50 4.95 0.70 N 177 18 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.29 108.50 4.79 0.70 N 178 18 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 112.95 108.50 4.45 0.70 N 179 18 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 117.31 108.50 8.81 0.70 N 180 18 "O4'" B G 101 ? ? "C1'" B G 101 ? ? N9 B G 101 ? ? 113.29 108.50 4.79 0.70 N 181 18 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.91 108.50 5.41 0.70 N 182 18 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 112.57 108.30 4.27 0.30 N 183 18 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.69 108.30 4.39 0.30 N 184 18 C6 B DT 106 ? ? C5 B DT 106 ? ? C7 B DT 106 ? ? 119.27 122.90 -3.63 0.60 N 185 18 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 112.73 108.30 4.43 0.30 N 186 18 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 113.67 108.30 5.37 0.30 N 187 19 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 113.39 108.50 4.89 0.70 N 188 19 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 116.82 108.50 8.32 0.70 N 189 19 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 113.07 108.50 4.57 0.70 N 190 19 "C5'" A G 7 ? ? "C4'" A G 7 ? ? "O4'" A G 7 ? ? 116.04 109.80 6.24 0.90 N 191 19 N1 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 122.54 118.90 3.64 0.60 N 192 19 N1 B C 102 ? ? C2 B C 102 ? ? O2 B C 102 ? ? 122.59 118.90 3.69 0.60 N 193 19 N3 B C 102 ? ? C2 B C 102 ? ? O2 B C 102 ? ? 117.41 121.90 -4.49 0.70 N 194 19 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.53 108.50 5.03 0.70 N 195 19 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 112.82 108.30 4.52 0.30 N 196 19 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.61 108.30 4.31 0.30 N 197 19 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 111.73 108.30 3.43 0.30 N 198 19 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 111.26 108.30 2.96 0.30 N 199 20 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 115.45 108.50 6.95 0.70 N 200 20 "C5'" A G 6 ? ? "C4'" A G 6 ? ? "O4'" A G 6 ? ? 115.83 109.80 6.03 0.90 N 201 20 "C5'" A G 7 ? ? "C4'" A G 7 ? ? "O4'" A G 7 ? ? 117.37 109.80 7.57 0.90 N 202 20 "O4'" B C 103 ? ? "C1'" B C 103 ? ? N1 B C 103 ? ? 113.59 108.50 5.09 0.70 N 203 20 "O4'" B DC 105 ? ? "C1'" B DC 105 ? ? N1 B DC 105 ? ? 116.04 108.30 7.74 0.30 N 204 20 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 112.50 108.30 4.20 0.30 N 205 20 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 113.19 108.30 4.89 0.30 N 206 20 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 110.67 108.30 2.37 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 4 ? ? 0.068 'SIDE CHAIN' 2 1 U A 5 ? ? 0.083 'SIDE CHAIN' 3 1 G A 7 ? ? 0.083 'SIDE CHAIN' 4 1 G B 101 ? ? 0.061 'SIDE CHAIN' 5 1 C B 102 ? ? 0.082 'SIDE CHAIN' 6 1 DG B 107 ? ? 0.101 'SIDE CHAIN' 7 2 G A 4 ? ? 0.101 'SIDE CHAIN' 8 2 U A 5 ? ? 0.109 'SIDE CHAIN' 9 2 G A 7 ? ? 0.111 'SIDE CHAIN' 10 2 C B 103 ? ? 0.058 'SIDE CHAIN' 11 2 A B 104 ? ? 0.085 'SIDE CHAIN' 12 3 A A 3 ? ? 0.106 'SIDE CHAIN' 13 3 G A 4 ? ? 0.089 'SIDE CHAIN' 14 3 U A 5 ? ? 0.093 'SIDE CHAIN' 15 3 C A 8 ? ? 0.072 'SIDE CHAIN' 16 3 C B 102 ? ? 0.094 'SIDE CHAIN' 17 3 A B 104 ? ? 0.087 'SIDE CHAIN' 18 4 C A 2 ? ? 0.068 'SIDE CHAIN' 19 4 G A 4 ? ? 0.107 'SIDE CHAIN' 20 4 G B 101 ? ? 0.046 'SIDE CHAIN' 21 4 C B 102 ? ? 0.092 'SIDE CHAIN' 22 4 DT B 106 ? ? 0.102 'SIDE CHAIN' 23 5 G A 1 ? ? 0.071 'SIDE CHAIN' 24 5 G A 4 ? ? 0.128 'SIDE CHAIN' 25 5 U A 5 ? ? 0.084 'SIDE CHAIN' 26 5 C A 8 ? ? 0.081 'SIDE CHAIN' 27 5 G B 101 ? ? 0.107 'SIDE CHAIN' 28 5 A B 104 ? ? 0.071 'SIDE CHAIN' 29 5 DC B 105 ? ? 0.097 'SIDE CHAIN' 30 5 DT B 106 ? ? 0.073 'SIDE CHAIN' 31 5 DC B 108 ? ? 0.105 'SIDE CHAIN' 32 6 G A 1 ? ? 0.071 'SIDE CHAIN' 33 6 G A 4 ? ? 0.146 'SIDE CHAIN' 34 6 U A 5 ? ? 0.109 'SIDE CHAIN' 35 6 G B 101 ? ? 0.060 'SIDE CHAIN' 36 6 C B 103 ? ? 0.145 'SIDE CHAIN' 37 6 A B 104 ? ? 0.073 'SIDE CHAIN' 38 7 C A 2 ? ? 0.187 'SIDE CHAIN' 39 7 G A 4 ? ? 0.066 'SIDE CHAIN' 40 7 U A 5 ? ? 0.083 'SIDE CHAIN' 41 7 G B 101 ? ? 0.144 'SIDE CHAIN' 42 7 C B 102 ? ? 0.077 'SIDE CHAIN' 43 7 DC B 105 ? ? 0.073 'SIDE CHAIN' 44 7 DT B 106 ? ? 0.095 'SIDE CHAIN' 45 7 DG B 107 ? ? 0.094 'SIDE CHAIN' 46 8 G A 1 ? ? 0.067 'SIDE CHAIN' 47 8 C A 2 ? ? 0.101 'SIDE CHAIN' 48 8 G A 4 ? ? 0.124 'SIDE CHAIN' 49 8 U A 5 ? ? 0.081 'SIDE CHAIN' 50 8 A B 104 ? ? 0.088 'SIDE CHAIN' 51 8 DG B 107 ? ? 0.064 'SIDE CHAIN' 52 8 DC B 108 ? ? 0.172 'SIDE CHAIN' 53 9 G A 1 ? ? 0.093 'SIDE CHAIN' 54 9 G A 4 ? ? 0.095 'SIDE CHAIN' 55 9 U A 5 ? ? 0.134 'SIDE CHAIN' 56 9 G A 7 ? ? 0.077 'SIDE CHAIN' 57 9 C B 103 ? ? 0.062 'SIDE CHAIN' 58 9 DT B 106 ? ? 0.090 'SIDE CHAIN' 59 9 DG B 107 ? ? 0.082 'SIDE CHAIN' 60 9 DC B 108 ? ? 0.106 'SIDE CHAIN' 61 10 G A 1 ? ? 0.075 'SIDE CHAIN' 62 10 A A 3 ? ? 0.083 'SIDE CHAIN' 63 10 G A 7 ? ? 0.056 'SIDE CHAIN' 64 10 G B 101 ? ? 0.088 'SIDE CHAIN' 65 10 A B 104 ? ? 0.060 'SIDE CHAIN' 66 10 DC B 108 ? ? 0.111 'SIDE CHAIN' 67 11 G A 1 ? ? 0.079 'SIDE CHAIN' 68 11 A A 3 ? ? 0.108 'SIDE CHAIN' 69 11 G A 7 ? ? 0.138 'SIDE CHAIN' 70 11 G B 101 ? ? 0.094 'SIDE CHAIN' 71 11 C B 102 ? ? 0.085 'SIDE CHAIN' 72 11 DT B 106 ? ? 0.088 'SIDE CHAIN' 73 11 DC B 108 ? ? 0.071 'SIDE CHAIN' 74 12 G A 1 ? ? 0.152 'SIDE CHAIN' 75 12 A A 3 ? ? 0.100 'SIDE CHAIN' 76 12 G A 4 ? ? 0.095 'SIDE CHAIN' 77 12 U A 5 ? ? 0.114 'SIDE CHAIN' 78 12 G A 6 ? ? 0.064 'SIDE CHAIN' 79 12 C A 8 ? ? 0.126 'SIDE CHAIN' 80 12 G B 101 ? ? 0.100 'SIDE CHAIN' 81 12 A B 104 ? ? 0.084 'SIDE CHAIN' 82 12 DC B 108 ? ? 0.141 'SIDE CHAIN' 83 13 G A 1 ? ? 0.195 'SIDE CHAIN' 84 13 A A 3 ? ? 0.096 'SIDE CHAIN' 85 13 G A 4 ? ? 0.119 'SIDE CHAIN' 86 13 U A 5 ? ? 0.102 'SIDE CHAIN' 87 13 G A 7 ? ? 0.059 'SIDE CHAIN' 88 13 C A 8 ? ? 0.154 'SIDE CHAIN' 89 13 G B 101 ? ? 0.092 'SIDE CHAIN' 90 13 C B 102 ? ? 0.063 'SIDE CHAIN' 91 13 A B 104 ? ? 0.059 'SIDE CHAIN' 92 13 DC B 105 ? ? 0.079 'SIDE CHAIN' 93 13 DT B 106 ? ? 0.101 'SIDE CHAIN' 94 13 DG B 107 ? ? 0.049 'SIDE CHAIN' 95 13 DC B 108 ? ? 0.070 'SIDE CHAIN' 96 14 G A 4 ? ? 0.127 'SIDE CHAIN' 97 14 U A 5 ? ? 0.095 'SIDE CHAIN' 98 14 C B 102 ? ? 0.101 'SIDE CHAIN' 99 14 A B 104 ? ? 0.079 'SIDE CHAIN' 100 14 DT B 106 ? ? 0.094 'SIDE CHAIN' 101 15 G A 4 ? ? 0.125 'SIDE CHAIN' 102 15 U A 5 ? ? 0.107 'SIDE CHAIN' 103 15 G B 101 ? ? 0.114 'SIDE CHAIN' 104 15 DC B 105 ? ? 0.066 'SIDE CHAIN' 105 16 G A 1 ? ? 0.079 'SIDE CHAIN' 106 16 A A 3 ? ? 0.060 'SIDE CHAIN' 107 16 G A 4 ? ? 0.128 'SIDE CHAIN' 108 16 U A 5 ? ? 0.082 'SIDE CHAIN' 109 16 G A 7 ? ? 0.063 'SIDE CHAIN' 110 16 G B 101 ? ? 0.137 'SIDE CHAIN' 111 16 C B 102 ? ? 0.065 'SIDE CHAIN' 112 16 C B 103 ? ? 0.074 'SIDE CHAIN' 113 16 DG B 107 ? ? 0.056 'SIDE CHAIN' 114 16 DC B 108 ? ? 0.069 'SIDE CHAIN' 115 17 C A 2 ? ? 0.073 'SIDE CHAIN' 116 17 G A 4 ? ? 0.122 'SIDE CHAIN' 117 17 G A 6 ? ? 0.059 'SIDE CHAIN' 118 17 G A 7 ? ? 0.078 'SIDE CHAIN' 119 17 A B 104 ? ? 0.092 'SIDE CHAIN' 120 17 DT B 106 ? ? 0.094 'SIDE CHAIN' 121 18 G A 1 ? ? 0.076 'SIDE CHAIN' 122 18 A A 3 ? ? 0.111 'SIDE CHAIN' 123 18 G A 4 ? ? 0.129 'SIDE CHAIN' 124 18 U A 5 ? ? 0.128 'SIDE CHAIN' 125 18 G A 7 ? ? 0.075 'SIDE CHAIN' 126 18 G B 101 ? ? 0.059 'SIDE CHAIN' 127 18 A B 104 ? ? 0.071 'SIDE CHAIN' 128 18 DC B 108 ? ? 0.083 'SIDE CHAIN' 129 19 G A 1 ? ? 0.083 'SIDE CHAIN' 130 19 G A 4 ? ? 0.122 'SIDE CHAIN' 131 19 G A 7 ? ? 0.113 'SIDE CHAIN' 132 19 A B 104 ? ? 0.065 'SIDE CHAIN' 133 19 DT B 106 ? ? 0.082 'SIDE CHAIN' 134 19 DG B 107 ? ? 0.058 'SIDE CHAIN' 135 19 DC B 108 ? ? 0.129 'SIDE CHAIN' 136 20 G A 1 ? ? 0.120 'SIDE CHAIN' 137 20 G A 4 ? ? 0.094 'SIDE CHAIN' 138 20 U A 5 ? ? 0.102 'SIDE CHAIN' 139 20 G A 7 ? ? 0.056 'SIDE CHAIN' 140 20 G B 101 ? ? 0.137 'SIDE CHAIN' 141 20 DT B 106 ? ? 0.084 'SIDE CHAIN' 142 20 DC B 108 ? ? 0.109 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1BYX _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'DYANA TARGET FUNCTION' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 3 1 DQF-COSY 1 4 1 'E H-P HETCOR' 1 5 1 'H-C COSY' 1 # _pdbx_nmr_details.entry_id 1BYX _pdbx_nmr_details.text ;THE 20 STRUCTURES ARE ENERGY-MINIMIZED WITH THE AMBER FORCE FIELD USING THE PROGRAM OPAL ; # _pdbx_nmr_refine.entry_id 1BYX _pdbx_nmr_refine.method 'distance geometry' _pdbx_nmr_refine.details 'REFINEMENT DETAILS ARE DESCRIBED IN THE JRNL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement DYANA ? GUNTERT,WUTHRICH 1 'structure solution' DYANA ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DC OP3 O N N 73 DC P P N N 74 DC OP1 O N N 75 DC OP2 O N N 76 DC "O5'" O N N 77 DC "C5'" C N N 78 DC "C4'" C N R 79 DC "O4'" O N N 80 DC "C3'" C N S 81 DC "O3'" O N N 82 DC "C2'" C N N 83 DC "C1'" C N R 84 DC N1 N N N 85 DC C2 C N N 86 DC O2 O N N 87 DC N3 N N N 88 DC C4 C N N 89 DC N4 N N N 90 DC C5 C N N 91 DC C6 C N N 92 DC HOP3 H N N 93 DC HOP2 H N N 94 DC "H5'" H N N 95 DC "H5''" H N N 96 DC "H4'" H N N 97 DC "H3'" H N N 98 DC "HO3'" H N N 99 DC "H2'" H N N 100 DC "H2''" H N N 101 DC "H1'" H N N 102 DC H41 H N N 103 DC H42 H N N 104 DC H5 H N N 105 DC H6 H N N 106 DG OP3 O N N 107 DG P P N N 108 DG OP1 O N N 109 DG OP2 O N N 110 DG "O5'" O N N 111 DG "C5'" C N N 112 DG "C4'" C N R 113 DG "O4'" O N N 114 DG "C3'" C N S 115 DG "O3'" O N N 116 DG "C2'" C N N 117 DG "C1'" C N R 118 DG N9 N Y N 119 DG C8 C Y N 120 DG N7 N Y N 121 DG C5 C Y N 122 DG C6 C N N 123 DG O6 O N N 124 DG N1 N N N 125 DG C2 C N N 126 DG N2 N N N 127 DG N3 N N N 128 DG C4 C Y N 129 DG HOP3 H N N 130 DG HOP2 H N N 131 DG "H5'" H N N 132 DG "H5''" H N N 133 DG "H4'" H N N 134 DG "H3'" H N N 135 DG "HO3'" H N N 136 DG "H2'" H N N 137 DG "H2''" H N N 138 DG "H1'" H N N 139 DG H8 H N N 140 DG H1 H N N 141 DG H21 H N N 142 DG H22 H N N 143 DT OP3 O N N 144 DT P P N N 145 DT OP1 O N N 146 DT OP2 O N N 147 DT "O5'" O N N 148 DT "C5'" C N N 149 DT "C4'" C N R 150 DT "O4'" O N N 151 DT "C3'" C N S 152 DT "O3'" O N N 153 DT "C2'" C N N 154 DT "C1'" C N R 155 DT N1 N N N 156 DT C2 C N N 157 DT O2 O N N 158 DT N3 N N N 159 DT C4 C N N 160 DT O4 O N N 161 DT C5 C N N 162 DT C7 C N N 163 DT C6 C N N 164 DT HOP3 H N N 165 DT HOP2 H N N 166 DT "H5'" H N N 167 DT "H5''" H N N 168 DT "H4'" H N N 169 DT "H3'" H N N 170 DT "HO3'" H N N 171 DT "H2'" H N N 172 DT "H2''" H N N 173 DT "H1'" H N N 174 DT H3 H N N 175 DT H71 H N N 176 DT H72 H N N 177 DT H73 H N N 178 DT H6 H N N 179 G OP3 O N N 180 G P P N N 181 G OP1 O N N 182 G OP2 O N N 183 G "O5'" O N N 184 G "C5'" C N N 185 G "C4'" C N R 186 G "O4'" O N N 187 G "C3'" C N S 188 G "O3'" O N N 189 G "C2'" C N R 190 G "O2'" O N N 191 G "C1'" C N R 192 G N9 N Y N 193 G C8 C Y N 194 G N7 N Y N 195 G C5 C Y N 196 G C6 C N N 197 G O6 O N N 198 G N1 N N N 199 G C2 C N N 200 G N2 N N N 201 G N3 N N N 202 G C4 C Y N 203 G HOP3 H N N 204 G HOP2 H N N 205 G "H5'" H N N 206 G "H5''" H N N 207 G "H4'" H N N 208 G "H3'" H N N 209 G "HO3'" H N N 210 G "H2'" H N N 211 G "HO2'" H N N 212 G "H1'" H N N 213 G H8 H N N 214 G H1 H N N 215 G H21 H N N 216 G H22 H N N 217 U OP3 O N N 218 U P P N N 219 U OP1 O N N 220 U OP2 O N N 221 U "O5'" O N N 222 U "C5'" C N N 223 U "C4'" C N R 224 U "O4'" O N N 225 U "C3'" C N S 226 U "O3'" O N N 227 U "C2'" C N R 228 U "O2'" O N N 229 U "C1'" C N R 230 U N1 N N N 231 U C2 C N N 232 U O2 O N N 233 U N3 N N N 234 U C4 C N N 235 U O4 O N N 236 U C5 C N N 237 U C6 C N N 238 U HOP3 H N N 239 U HOP2 H N N 240 U "H5'" H N N 241 U "H5''" H N N 242 U "H4'" H N N 243 U "H3'" H N N 244 U "HO3'" H N N 245 U "H2'" H N N 246 U "HO2'" H N N 247 U "H1'" H N N 248 U H3 H N N 249 U H5 H N N 250 U H6 H N N 251 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DC OP3 P sing N N 76 DC OP3 HOP3 sing N N 77 DC P OP1 doub N N 78 DC P OP2 sing N N 79 DC P "O5'" sing N N 80 DC OP2 HOP2 sing N N 81 DC "O5'" "C5'" sing N N 82 DC "C5'" "C4'" sing N N 83 DC "C5'" "H5'" sing N N 84 DC "C5'" "H5''" sing N N 85 DC "C4'" "O4'" sing N N 86 DC "C4'" "C3'" sing N N 87 DC "C4'" "H4'" sing N N 88 DC "O4'" "C1'" sing N N 89 DC "C3'" "O3'" sing N N 90 DC "C3'" "C2'" sing N N 91 DC "C3'" "H3'" sing N N 92 DC "O3'" "HO3'" sing N N 93 DC "C2'" "C1'" sing N N 94 DC "C2'" "H2'" sing N N 95 DC "C2'" "H2''" sing N N 96 DC "C1'" N1 sing N N 97 DC "C1'" "H1'" sing N N 98 DC N1 C2 sing N N 99 DC N1 C6 sing N N 100 DC C2 O2 doub N N 101 DC C2 N3 sing N N 102 DC N3 C4 doub N N 103 DC C4 N4 sing N N 104 DC C4 C5 sing N N 105 DC N4 H41 sing N N 106 DC N4 H42 sing N N 107 DC C5 C6 doub N N 108 DC C5 H5 sing N N 109 DC C6 H6 sing N N 110 DG OP3 P sing N N 111 DG OP3 HOP3 sing N N 112 DG P OP1 doub N N 113 DG P OP2 sing N N 114 DG P "O5'" sing N N 115 DG OP2 HOP2 sing N N 116 DG "O5'" "C5'" sing N N 117 DG "C5'" "C4'" sing N N 118 DG "C5'" "H5'" sing N N 119 DG "C5'" "H5''" sing N N 120 DG "C4'" "O4'" sing N N 121 DG "C4'" "C3'" sing N N 122 DG "C4'" "H4'" sing N N 123 DG "O4'" "C1'" sing N N 124 DG "C3'" "O3'" sing N N 125 DG "C3'" "C2'" sing N N 126 DG "C3'" "H3'" sing N N 127 DG "O3'" "HO3'" sing N N 128 DG "C2'" "C1'" sing N N 129 DG "C2'" "H2'" sing N N 130 DG "C2'" "H2''" sing N N 131 DG "C1'" N9 sing N N 132 DG "C1'" "H1'" sing N N 133 DG N9 C8 sing Y N 134 DG N9 C4 sing Y N 135 DG C8 N7 doub Y N 136 DG C8 H8 sing N N 137 DG N7 C5 sing Y N 138 DG C5 C6 sing N N 139 DG C5 C4 doub Y N 140 DG C6 O6 doub N N 141 DG C6 N1 sing N N 142 DG N1 C2 sing N N 143 DG N1 H1 sing N N 144 DG C2 N2 sing N N 145 DG C2 N3 doub N N 146 DG N2 H21 sing N N 147 DG N2 H22 sing N N 148 DG N3 C4 sing N N 149 DT OP3 P sing N N 150 DT OP3 HOP3 sing N N 151 DT P OP1 doub N N 152 DT P OP2 sing N N 153 DT P "O5'" sing N N 154 DT OP2 HOP2 sing N N 155 DT "O5'" "C5'" sing N N 156 DT "C5'" "C4'" sing N N 157 DT "C5'" "H5'" sing N N 158 DT "C5'" "H5''" sing N N 159 DT "C4'" "O4'" sing N N 160 DT "C4'" "C3'" sing N N 161 DT "C4'" "H4'" sing N N 162 DT "O4'" "C1'" sing N N 163 DT "C3'" "O3'" sing N N 164 DT "C3'" "C2'" sing N N 165 DT "C3'" "H3'" sing N N 166 DT "O3'" "HO3'" sing N N 167 DT "C2'" "C1'" sing N N 168 DT "C2'" "H2'" sing N N 169 DT "C2'" "H2''" sing N N 170 DT "C1'" N1 sing N N 171 DT "C1'" "H1'" sing N N 172 DT N1 C2 sing N N 173 DT N1 C6 sing N N 174 DT C2 O2 doub N N 175 DT C2 N3 sing N N 176 DT N3 C4 sing N N 177 DT N3 H3 sing N N 178 DT C4 O4 doub N N 179 DT C4 C5 sing N N 180 DT C5 C7 sing N N 181 DT C5 C6 doub N N 182 DT C7 H71 sing N N 183 DT C7 H72 sing N N 184 DT C7 H73 sing N N 185 DT C6 H6 sing N N 186 G OP3 P sing N N 187 G OP3 HOP3 sing N N 188 G P OP1 doub N N 189 G P OP2 sing N N 190 G P "O5'" sing N N 191 G OP2 HOP2 sing N N 192 G "O5'" "C5'" sing N N 193 G "C5'" "C4'" sing N N 194 G "C5'" "H5'" sing N N 195 G "C5'" "H5''" sing N N 196 G "C4'" "O4'" sing N N 197 G "C4'" "C3'" sing N N 198 G "C4'" "H4'" sing N N 199 G "O4'" "C1'" sing N N 200 G "C3'" "O3'" sing N N 201 G "C3'" "C2'" sing N N 202 G "C3'" "H3'" sing N N 203 G "O3'" "HO3'" sing N N 204 G "C2'" "O2'" sing N N 205 G "C2'" "C1'" sing N N 206 G "C2'" "H2'" sing N N 207 G "O2'" "HO2'" sing N N 208 G "C1'" N9 sing N N 209 G "C1'" "H1'" sing N N 210 G N9 C8 sing Y N 211 G N9 C4 sing Y N 212 G C8 N7 doub Y N 213 G C8 H8 sing N N 214 G N7 C5 sing Y N 215 G C5 C6 sing N N 216 G C5 C4 doub Y N 217 G C6 O6 doub N N 218 G C6 N1 sing N N 219 G N1 C2 sing N N 220 G N1 H1 sing N N 221 G C2 N2 sing N N 222 G C2 N3 doub N N 223 G N2 H21 sing N N 224 G N2 H22 sing N N 225 G N3 C4 sing N N 226 U OP3 P sing N N 227 U OP3 HOP3 sing N N 228 U P OP1 doub N N 229 U P OP2 sing N N 230 U P "O5'" sing N N 231 U OP2 HOP2 sing N N 232 U "O5'" "C5'" sing N N 233 U "C5'" "C4'" sing N N 234 U "C5'" "H5'" sing N N 235 U "C5'" "H5''" sing N N 236 U "C4'" "O4'" sing N N 237 U "C4'" "C3'" sing N N 238 U "C4'" "H4'" sing N N 239 U "O4'" "C1'" sing N N 240 U "C3'" "O3'" sing N N 241 U "C3'" "C2'" sing N N 242 U "C3'" "H3'" sing N N 243 U "O3'" "HO3'" sing N N 244 U "C2'" "O2'" sing N N 245 U "C2'" "C1'" sing N N 246 U "C2'" "H2'" sing N N 247 U "O2'" "HO2'" sing N N 248 U "C1'" N1 sing N N 249 U "C1'" "H1'" sing N N 250 U N1 C2 sing N N 251 U N1 C6 sing N N 252 U C2 O2 doub N N 253 U C2 N3 sing N N 254 U N3 C4 sing N N 255 U N3 H3 sing N N 256 U C4 O4 doub N N 257 U C4 C5 sing N N 258 U C5 C6 doub N N 259 U C5 H5 sing N N 260 U C6 H6 sing N N 261 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BYX 'double helix' 1BYX 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 B DG 7 1_555 -0.139 -0.031 -0.195 -8.025 1.032 -3.366 1 A_C2:DG107_B A 2 ? B 107 ? 19 1 1 A A 3 1_555 B DT 6 1_555 -0.288 -0.280 0.760 2.416 -12.101 -0.019 2 A_A3:DT106_B A 3 ? B 106 ? 20 1 1 A G 4 1_555 B DC 5 1_555 0.145 -0.102 -0.094 -10.188 -20.854 -1.231 3 A_G4:DC105_B A 4 ? B 105 ? 19 1 1 A U 5 1_555 B A 4 1_555 -0.382 -0.034 -0.069 -6.741 -16.433 -2.632 4 A_U5:A104_B A 5 ? B 104 ? 20 1 1 A G 6 1_555 B C 3 1_555 0.584 -0.046 -0.041 -8.484 1.582 -6.816 5 A_G6:C103_B A 6 ? B 103 ? 19 1 1 A G 7 1_555 B C 2 1_555 0.101 -0.049 -0.087 -0.608 -11.132 -2.104 6 A_G7:C102_B A 7 ? B 102 ? 19 1 1 A C 8 1_555 B G 1 1_555 -1.530 2.367 2.442 -5.691 -5.285 -161.699 7 A_C8:G101_B A 8 ? B 101 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 B DG 7 1_555 A A 3 1_555 B DT 6 1_555 1.121 -1.315 3.456 -3.241 -11.950 27.299 0.233 -2.925 3.554 -23.827 6.462 29.927 1 AA_C2A3:DT106DG107_BB A 2 ? B 107 ? A 3 ? B 106 ? 1 A A 3 1_555 B DT 6 1_555 A G 4 1_555 B DC 5 1_555 0.040 -1.972 4.137 10.095 -6.854 35.802 -1.875 1.665 4.287 -10.771 -15.864 37.759 2 AA_A3G4:DC105DT106_BB A 3 ? B 106 ? A 4 ? B 105 ? 1 A G 4 1_555 B DC 5 1_555 A U 5 1_555 B A 4 1_555 -0.424 -1.099 3.259 0.155 -6.498 34.200 -0.820 0.734 3.402 -10.926 -0.260 34.794 3 AA_G4U5:A104DC105_BB A 4 ? B 105 ? A 5 ? B 104 ? 1 A U 5 1_555 B A 4 1_555 A G 6 1_555 B C 3 1_555 0.056 -1.601 3.379 -1.928 5.294 32.515 -3.713 -0.424 3.079 9.366 3.411 32.986 4 AA_U5G6:C103A104_BB A 5 ? B 104 ? A 6 ? B 103 ? 1 A G 6 1_555 B C 3 1_555 A G 7 1_555 B C 2 1_555 0.661 -1.593 3.127 2.078 10.454 29.370 -4.717 -0.881 2.469 19.815 -3.940 31.204 5 AA_G6G7:C102C103_BB A 6 ? B 103 ? A 7 ? B 102 ? 1 A G 7 1_555 B C 2 1_555 A C 8 1_555 B G 1 1_555 -4.199 1.474 -0.085 85.663 140.513 147.943 0.763 2.086 -0.336 70.510 -42.986 175.750 6 AA_G7C8:G101C102_BB A 7 ? B 102 ? A 8 ? B 101 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AMX Bruker 500 ? 2 AMX Bruker 600 ? 3 UNITY Varian 750 ? # _atom_sites.entry_id 1BYX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_