HEADER IMMUNE SYSTEM 20-JUL-99 1C12 TITLE INSIGHT IN ODORANT PERCEPTION: THE CRYSTAL STRUCTURE AND BINDING TITLE 2 CHARACTERISTICS OF ANTIBODY FRAGMENTS DIRECTED AGAINST THE MUSK TITLE 3 ODORANT TRASEOLIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ANTIBODY FRAGMENT FAB); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (ANTIBODY FRAGMENT FAB); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS ANTIBODY-ANTIGEN COMPLEX, SCFV FRAGMENT, CDRH3, MUSK ODORANT, ODORANT KEYWDS 2 SPECIFICITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.C.LANGEDIJK,S.SPINELLI,C.ANGUILLE,P.HERMANS,J.NEDERLOF,J.BUTENANDT, AUTHOR 2 A.HONEGGER,C.CAMBILLAU,A.PLUCKTHUN REVDAT 8 16-OCT-24 1C12 1 REMARK REVDAT 7 28-FEB-18 1C12 1 REMARK REVDAT 6 31-JAN-18 1C12 1 REMARK REVDAT 5 24-FEB-09 1C12 1 VERSN REVDAT 4 01-APR-03 1C12 1 JRNL REVDAT 3 31-JAN-00 1C12 1 JRNL REVDAT 2 11-OCT-99 1C12 3 ATOM REVDAT 1 14-AUG-99 1C12 0 JRNL AUTH A.C.LANGEDIJK,S.SPINELLI,C.ANGUILLE,P.HERMANS,J.NEDERLOF, JRNL AUTH 2 J.BUTENANDT,A.HONEGGER,C.CAMBILLAU,A.PLUCKTHUN JRNL TITL INSIGHT INTO ODORANT PERCEPTION: THE CRYSTAL STRUCTURE AND JRNL TITL 2 BINDING CHARACTERISTICS OF ANTIBODY FRAGMENTS DIRECTED JRNL TITL 3 AGAINST THE MUSK ODORANT TRASEOLIDE. JRNL REF J.MOL.BIOL. V. 292 855 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10525411 JRNL DOI 10.1006/JMBI.1999.3101 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000009361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-95 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15749 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM ACETATE, PH 4.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 20.0K, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.15000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A FAB MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 41 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 39 CD CE NZ REMARK 480 LYS A 42 CG CD CE NZ REMARK 480 LEU B 400 CG CD1 CD2 REMARK 480 ARG B 400A CG CD NE CZ NH1 NH2 REMARK 480 ARG B 400B CG CD NE CZ NH1 NH2 REMARK 480 LYS B 400C CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASN B 455 N SER B 456 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 430 CA ALA B 430 C 0.241 REMARK 500 ALA B 430 C ALA B 430 O -0.416 REMARK 500 ASN B 455 CA ASN B 455 CB 0.180 REMARK 500 ASN B 455 CB ASN B 455 CG 2.460 REMARK 500 ASN B 455 CA ASN B 455 C 0.266 REMARK 500 ASN B 455 C ASN B 455 O 2.488 REMARK 500 SER B 456 CA SER B 456 CB -0.238 REMARK 500 GLY B 457 N GLY B 457 CA -0.091 REMARK 500 SER B 458 N SER B 458 CA 0.177 REMARK 500 SER B 458 CA SER B 458 CB 0.104 REMARK 500 SER B 458 CA SER B 458 C -0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 40 CA - C - O ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO A 40 CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 GLY A 41 C - N - CA ANGL. DEV. = -15.2 DEGREES REMARK 500 LYS A 42 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 LYS A 42 N - CA - C ANGL. DEV. = 24.8 DEGREES REMARK 500 ALA B 430 CA - C - O ANGL. DEV. = 22.6 DEGREES REMARK 500 ASN B 455 CB - CA - C ANGL. DEV. = 20.5 DEGREES REMARK 500 ASN B 455 N - CA - CB ANGL. DEV. = 17.2 DEGREES REMARK 500 ASN B 455 CA - CB - CG ANGL. DEV. = -72.4 DEGREES REMARK 500 ASN B 455 N - CA - C ANGL. DEV. = -25.3 DEGREES REMARK 500 ASN B 455 CA - C - O ANGL. DEV. = -95.3 DEGREES REMARK 500 SER B 456 N - CA - CB ANGL. DEV. = 31.5 DEGREES REMARK 500 SER B 456 N - CA - C ANGL. DEV. = -28.6 DEGREES REMARK 500 GLY B 457 CA - C - N ANGL. DEV. = -18.8 DEGREES REMARK 500 GLY B 457 O - C - N ANGL. DEV. = 16.4 DEGREES REMARK 500 SER B 458 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 11.18 -68.57 REMARK 500 LYS A 42 -159.93 -29.88 REMARK 500 LEU A 47 -62.34 -96.17 REMARK 500 SER A 77 84.11 59.37 REMARK 500 ALA A 84 -155.59 -158.84 REMARK 500 ASN A 138 72.17 52.46 REMARK 500 LYS A 169 -65.30 -90.39 REMARK 500 SER B 315 -11.67 86.60 REMARK 500 ILE B 329 4.11 -62.94 REMARK 500 TYR B 332 159.92 54.16 REMARK 500 ASN B 343 -3.03 75.70 REMARK 500 SER B 382B 56.71 39.33 REMARK 500 LEU B 400 -151.07 -87.85 REMARK 500 SER B 428 25.26 87.63 REMARK 500 ALA B 433 -163.09 -118.79 REMARK 500 ALA B 501 -17.99 -46.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRZ A 215 DBREF 1C12 A 1 214 PDB 1C12 1C12 1 214 DBREF 1C12 B 301 513 PDB 1C12 1C12 301 513 SEQRES 1 A 214 ASP ILE GLU LEU THR GLN SER PRO SER SER MET SER VAL SEQRES 2 A 214 SER LEU GLY ASP THR VAL SER ILE THR CYS HIS ALA SER SEQRES 3 A 214 GLN GLY ILE SER SER ASN ILE GLY TRP LEU GLN GLN LYS SEQRES 4 A 214 PRO GLY LYS SER PHE LYS GLY LEU ILE TYR HIS GLY THR SEQRES 5 A 214 ASN LEU GLU ASP GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY ALA ASP TYR SER LEU THR ILE SER SER LEU SEQRES 7 A 214 GLU SER GLU ASP PHE ALA ASP TYR TYR CYS VAL GLN TYR SEQRES 8 A 214 VAL GLN PHE PRO PHE THR PHE GLY SER GLY THR LYS LEU SEQRES 9 A 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 A 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 214 PHE ASN ARG ASN GLU ALA SEQRES 1 B 220 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 B 220 PRO SER GLN SER LEU SER LEU THR CYS THR VAL THR GLY SEQRES 3 B 220 TYR SER ILE THR SER ASP TYR ALA TRP ASN TRP ILE ARG SEQRES 4 B 220 GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE SEQRES 5 B 220 SER TYR SER GLY SER THR SER TYR SER PRO SER LEU LYS SEQRES 6 B 220 SER ARG ILE SER LEU THR ARG ASP THR SER LYS ASN GLN SEQRES 7 B 220 PHE PHE LEU GLN LEU ASN SER VAL THR THR GLU ASP THR SEQRES 8 B 220 ALA THR TYR TYR CYS VAL THR SER LEU THR TRP LEU LEU SEQRES 9 B 220 ARG ARG LYS ARG SER TYR TRP GLY GLN GLY THR THR VAL SEQRES 10 B 220 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL TYR SEQRES 11 B 220 PRO LEU ALA PRO GLY SER LYS ALA ALA ALA SER MET VAL SEQRES 12 B 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 B 220 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 B 220 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 B 220 THR LEU SER SER SER VAL THR VAL PRO SER SER PRO ARG SEQRES 16 B 220 PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 B 220 SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO GLU HET TRZ A 215 23 HETNAM TRZ TRAZEOLIDE FORMUL 3 TRZ C20 H28 O3 FORMUL 4 HOH *114(H2 O) HELIX 1 1 GLU A 79 PHE A 83 5 5 HELIX 2 2 SER A 121 GLY A 128 1 8 HELIX 3 3 LYS A 183 GLU A 187 1 5 HELIX 4 4 PRO B 361 LYS B 364 5 4 HELIX 5 5 THR B 383 THR B 387 5 5 HELIX 6 6 SER B 456 SER B 458 5 3 HELIX 7 7 SER B 486 GLU B 491 1 6 HELIX 8 8 PRO B 500 SER B 503 5 4 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 N THR A 22 O SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 N TYR A 71 O CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 O SER A 63 N THR A 74 SHEET 1 B 5 ASN A 53 LEU A 54 0 SHEET 2 B 5 PHE A 44 TYR A 49 -1 N TYR A 49 O ASN A 53 SHEET 3 B 5 ILE A 33 GLN A 38 -1 O TRP A 35 N LEU A 47 SHEET 4 B 5 ASP A 85 GLN A 90 -1 O ASP A 85 N GLN A 38 SHEET 5 B 5 THR A 97 PHE A 98L-1 O THR A 97 N GLN A 90 SHEET 1 B1 6 ASN A 53 LEU A 54 0 SHEET 2 B1 6 PHE A 44 TYR A 49 -1 N TYR A 49 O ASN A 53 SHEET 3 B1 6 ILE A 33 GLN A 38 -1 O TRP A 35 N LEU A 47 SHEET 4 B1 6 ASP A 85 GLN A 90 -1 O ASP A 85 N GLN A 38 SHEET 5 B1 6 THR A 102 ILE A 106 -1 O THR A 102 N TYR A 86 SHEET 6 B1 6 SER A 10 VAL A 13 1 O MET A 11 N GLU A 105 SHEET 1 C 4 THR A 114 PHE A 118 0 SHEET 2 C 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 C 4 TYR A 173 THR A 182 -1 O TYR A 173 N PHE A 139 SHEET 4 C 4 VAL A 159 TRP A 163 -1 N LEU A 160 O THR A 178 SHEET 1 D 4 SER A 153 ARG A 155 0 SHEET 2 D 4 ASN A 145 ILE A 150 -1 O TRP A 148 N ARG A 155 SHEET 3 D 4 SER A 191 THR A 197 -1 N THR A 193 O LYS A 149 SHEET 4 D 4 ILE A 205 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 E 4 GLN B 303 SER B 307 0 SHEET 2 E 4 LEU B 318 THR B 325 -1 N THR B 321 O SER B 307 SHEET 3 E 4 GLN B 377 LEU B 382 -1 O PHE B 378 N CYS B 322 SHEET 4 E 4 ILE B 367 ASP B 372 -1 O SER B 368 N GLN B 381 SHEET 1 F 6 LEU B 311 VAL B 312 0 SHEET 2 F 6 THR B 407 VAL B 411 1 O THR B 410 N VAL B 312 SHEET 3 F 6 ALA B 388 THR B 394 -1 O ALA B 388 N VAL B 409 SHEET 4 F 6 TRP B 334 GLN B 339 -1 N ASN B 35H O VAL B 393 SHEET 5 F 6 LEU B 345 ILE B 351 -1 N GLU B 346 O ARG B 338 SHEET 6 F 6 THR B 357 TYR B 359 -1 O SER B 358 N TYR B 50H SHEET 1 G 4 SER B 420 LEU B 424 0 SHEET 2 G 4 MET B 435 TYR B 445 -1 O GLY B 439 N LEU B 424 SHEET 3 G 4 LEU B 474 PRO B 484 -1 N TYR B 475 O TYR B 445 SHEET 4 G 4 VAL B 463 THR B 465 -1 N HIS B 464 O SER B 480 SHEET 1 G1 4 SER B 420 LEU B 424 0 SHEET 2 G1 4 MET B 435 TYR B 445 -1 O GLY B 439 N LEU B 424 SHEET 3 G1 4 LEU B 474 PRO B 484 -1 N TYR B 475 O TYR B 445 SHEET 4 G1 4 VAL B 469 GLN B 471 -1 N VAL B 469 O THR B 476 SHEET 1 H 3 THR B 451 TRP B 454 0 SHEET 2 H 3 THR B 494 HIS B 499 -1 N ASN B 496 O THR B 453 SHEET 3 H 3 THR B 504 LYS B 509 -1 N THR B 504 O HIS B 499 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 322 CYS B 392 1555 1555 2.03 SSBOND 4 CYS B 440 CYS B 495 1555 1555 2.02 CISPEP 1 SER A 7 PRO A 8 0 -0.50 CISPEP 2 PHE A 94 PRO A 95 0 2.30 CISPEP 3 TYR A 140 PRO A 141 0 -0.20 CISPEP 4 PHE B 446 PRO B 447 0 1.49 CISPEP 5 GLU B 448 PRO B 449 0 -8.37 CISPEP 6 ARG B 488 PRO B 489 0 4.72 SITE 1 AC1 8 TYR A 91L PHE A 96L HOH A 243 HOH A 262 SITE 2 AC1 8 ASN B 35H TRP B 47H LEU B 96H VAL B 393 CRYST1 40.400 84.100 134.300 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007446 0.00000