HEADER CONTRACTILE PROTEIN 22-JUL-99 1C1G TITLE CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTION IN THE TITLE 2 SPERMINE-INDUCED CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TROPOMYOSIN; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 TISSUE: CARDIAC MUSCLE KEYWDS TROPOMYOSIN COILED-COIL ALPHA-HELICAL, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.G.WHITBY,G.N.PHILLIPS JR. REVDAT 4 07-FEB-24 1C1G 1 REMARK REVDAT 3 31-JAN-18 1C1G 1 REMARK REVDAT 2 24-FEB-09 1C1G 1 VERSN REVDAT 1 11-FEB-00 1C1G 0 JRNL AUTH F.G.WHITBY,G.N.PHILLIPS JR. JRNL TITL CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTION. JRNL REF PROTEINS V. 38 49 2000 JRNL REFN ISSN 0887-3585 JRNL PMID 10651038 JRNL DOI 10.1002/(SICI)1097-0134(20000101)38:1<49::AID-PROT6>3.3.CO;2 JRNL DOI 2 -2 REMARK 2 REMARK 2 RESOLUTION. 7.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 7.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 3117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.404 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 7.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 7.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.06 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 285 REMARK 3 BIN R VALUE (WORKING SET) : 0.4770 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000009373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 21 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000, 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3117 REMARK 200 RESOLUTION RANGE HIGH (A) : 7.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIMEROSAL WAS PRE-REACTED WITH PURIFIED TROPOMYOSIN PRIOR REMARK 200 GROWING CRYSTALS (SPERMINE-INDUCED CRYSTAL FORM). ONE MERCURY REMARK 200 REACTS REMARK 200 WITH CYTEINE-190 OF EACH CHAIN OF THE MOLECULE. THUS FOUR MERCURY REMARK 200 ATOMS ARE PRESENT IN THE ASYMMETRIC UNIT. TWO MERCURY ATOMS ARE REMARK 200 LOCATED ADJECENT TO EACH OTHER ON NEIGHBORING CHAINS ON THE REMARK 200 MOLECULE, REMARK 200 AND FOR HEAVY-ATOM PHASING PURPOSES, THESE PAIRS WERE CONSIDERED AS REMARK 200 A SINGLE POINT SCATTERER (DUE TO 7 ANGSTROM RESOLUTION LIMIT). SIR REMARK 200 PHASES DETERMINED FROM THIS DERIVATIVE SHOWED CLEAR MOLECULAR REMARK 200 PACKING REMARK 200 CONSISTENT WITH THE PREVIOUSLY DETERMINED 9 ANGSTROM STRUCTURE IN REMARK 200 THE REMARK 200 SAME CRYSTAL FORM WHICH WAS DETERMINED BY MOLECULAR REPLACEMENT REMARK 200 USING REMARK 200 A HIGHLY SIMPLIFIED MODEL (WHITBY, ET AL. JMB 1992;227:441-452) REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SPERMINE, PH 7.4, LIQUID DIFFUSION, REMARK 280 TEMPERATURE 18K, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 129.86900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 129.86900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER C 851 O LYS D 857 3364 2.14 REMARK 500 O ASP C 848 O ILE D 856 3364 2.16 REMARK 500 N ILE C 852 N MET D 860 3364 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 153 NE2 HIS A 153 CD2 -0.068 REMARK 500 GLU A 224 CA GLU A 224 CB 0.186 REMARK 500 HIS A 276 NE2 HIS A 276 CD2 -0.067 REMARK 500 HIS B 437 NE2 HIS B 437 CD2 -0.066 REMARK 500 HIS B 560 NE2 HIS B 560 CD2 -0.073 REMARK 500 ILE C 572 CA ILE C 572 CB 0.265 REMARK 500 ASP C 705 N ASP C 705 CA 0.186 REMARK 500 ASP C 705 CA ASP C 705 C 0.236 REMARK 500 ASP C 705 C GLU C 706 N 0.198 REMARK 500 HIS C 721 NE2 HIS C 721 CD2 -0.075 REMARK 500 HIS C 844 NE2 HIS C 844 CD2 -0.067 REMARK 500 SER C 851 CA SER C 851 C 0.189 REMARK 500 ILE C 852 N ILE C 852 CA 0.619 REMARK 500 ILE C 852 CA ILE C 852 CB 0.495 REMARK 500 LYS D 858 C LYS D 858 O 0.119 REMARK 500 LYS D 858 C LYS D 859 N 0.184 REMARK 500 LYS D 859 N LYS D 859 CA 0.215 REMARK 500 MET D 860 N MET D 860 CA 0.177 REMARK 500 HIS D1128 NE2 HIS D1128 CD2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 N - CA - C ANGL. DEV. = -23.8 DEGREES REMARK 500 ASP A 2 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 ALA A 3 CA - C - N ANGL. DEV. = 16.4 DEGREES REMARK 500 ILE A 4 CG1 - CB - CG2 ANGL. DEV. = -17.9 DEGREES REMARK 500 ILE A 4 CA - CB - CG1 ANGL. DEV. = 23.4 DEGREES REMARK 500 ILE A 4 CA - CB - CG2 ANGL. DEV. = -43.8 DEGREES REMARK 500 ILE A 4 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 LYS A 5 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 LYS A 5 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 LYS A 7 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 LYS A 7 CA - CB - CG ANGL. DEV. = 24.3 DEGREES REMARK 500 MET A 8 C - N - CA ANGL. DEV. = -18.9 DEGREES REMARK 500 MET A 8 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 GLU A 173 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 GLU A 212 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 GLU A 222 O - C - N ANGL. DEV. = 12.0 DEGREES REMARK 500 GLU A 223 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 GLU A 223 CA - C - O ANGL. DEV. = 20.3 DEGREES REMARK 500 GLU A 223 CA - C - N ANGL. DEV. = -38.7 DEGREES REMARK 500 GLU A 224 CA - CB - CG ANGL. DEV. = 31.4 DEGREES REMARK 500 GLU A 224 N - CA - C ANGL. DEV. = 27.4 DEGREES REMARK 500 GLU A 224 CA - C - N ANGL. DEV. = -30.1 DEGREES REMARK 500 GLU A 224 O - C - N ANGL. DEV. = 11.0 DEGREES REMARK 500 ILE A 225 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 LYS A 226 CA - C - O ANGL. DEV. = -15.1 DEGREES REMARK 500 LYS A 226 CA - C - N ANGL. DEV. = 24.4 DEGREES REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASN A 279 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP A 280 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 ASP A 280 N - CA - CB ANGL. DEV. = -14.7 DEGREES REMARK 500 ASP A 280 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 MET A 281 CB - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 MET A 281 N - CA - CB ANGL. DEV. = 15.6 DEGREES REMARK 500 MET A 281 O - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 SER A 283 CA - C - N ANGL. DEV. = 17.2 DEGREES REMARK 500 ILE A 284 CG1 - CB - CG2 ANGL. DEV. = -18.4 DEGREES REMARK 500 ILE A 284 CA - CB - CG1 ANGL. DEV. = 14.4 DEGREES REMARK 500 ILE A 284 CA - CB - CG2 ANGL. DEV. = -16.5 DEGREES REMARK 500 ILE B 288 CA - CB - CG1 ANGL. DEV. = 13.1 DEGREES REMARK 500 ILE B 288 CA - CB - CG2 ANGL. DEV. = -19.1 DEGREES REMARK 500 MET B 292 CA - CB - CG ANGL. DEV. = 12.8 DEGREES REMARK 500 MET B 294 CA - C - N ANGL. DEV. = 18.7 DEGREES REMARK 500 MET B 294 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 GLU B 338 OE1 - CD - OE2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG B 374 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR B 446 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 TYR B 446 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR B 446 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 LEU B 453 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 152 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 4 -50.56 -25.29 REMARK 500 LYS A 6 -17.98 -46.75 REMARK 500 LYS A 7 -83.87 -63.95 REMARK 500 ALA A 22 -70.96 -80.10 REMARK 500 LYS A 30 -70.71 -63.24 REMARK 500 LYS A 37 -71.84 -80.76 REMARK 500 GLN A 38 -53.68 -26.04 REMARK 500 ASP A 58 -76.95 -59.53 REMARK 500 LYS A 59 -32.41 -33.53 REMARK 500 LYS A 65 -78.83 -78.48 REMARK 500 ASP A 66 -43.13 -24.74 REMARK 500 LEU A 71 -83.92 -69.17 REMARK 500 GLU A 72 -32.56 -31.60 REMARK 500 LEU A 113 -84.00 -72.09 REMARK 500 GLU A 114 -35.83 -37.33 REMARK 500 LEU A 169 -77.56 -67.66 REMARK 500 GLU A 223 -0.72 -59.67 REMARK 500 GLU A 224 128.26 91.57 REMARK 500 VAL A 246 -71.42 -71.82 REMARK 500 ASP A 255 -60.77 -28.10 REMARK 500 GLU A 259 2.23 -67.76 REMARK 500 MET A 281 30.32 -74.50 REMARK 500 ASP B 286 -76.11 -51.74 REMARK 500 ILE B 288 -70.28 -31.47 REMARK 500 LEU B 334 -73.51 -64.28 REMARK 500 ALA B 553 -80.61 -62.55 REMARK 500 ALA B 561 -57.59 -23.52 REMARK 500 ASP C 570 -101.02 -32.19 REMARK 500 ALA C 571 40.49 -75.09 REMARK 500 ILE C 572 -85.11 -117.58 REMARK 500 ALA C 599 11.14 -66.80 REMARK 500 LYS C 633 -71.77 -69.22 REMARK 500 LEU C 639 -81.56 -73.02 REMARK 500 GLU C 640 -41.73 -26.32 REMARK 500 ASP C 648 -72.00 -68.42 REMARK 500 ALA C 649 -18.91 -49.89 REMARK 500 GLN C 679 -72.06 -62.97 REMARK 500 LYS C 708 -92.84 34.96 REMARK 500 HIS C 844 -76.82 -50.09 REMARK 500 ALA C 845 -87.38 -22.53 REMARK 500 ASP D 854 -63.23 -11.62 REMARK 500 ASP D 880 143.03 110.38 REMARK 500 LYS D 882 -70.47 -70.55 REMARK 500 ARG D 985 -72.94 -73.11 REMARK 500 ALA D 986 0.85 -53.62 REMARK 500 LYS D1078 -78.37 -73.53 REMARK 500 VAL D1079 -39.74 -24.47 REMARK 500 ALA D1094 -73.80 -59.48 REMARK 500 VAL D1098 -85.58 -78.03 REMARK 500 THR D1099 -28.44 -33.82 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 223 GLU A 224 121.20 REMARK 500 ASP C 705 GLU C 706 142.66 REMARK 500 GLU C 707 LYS C 708 124.62 REMARK 500 THR C 850 SER C 851 146.94 REMARK 500 LYS D 859 MET D 860 133.02 REMARK 500 ALA D 879 ASP D 880 119.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 223 -18.29 REMARK 500 GLU A 224 12.04 REMARK 500 ALA C 702 -13.61 REMARK 500 GLN C 703 -11.26 REMARK 500 LYS D 859 -10.78 REMARK 500 ALA D 879 -14.25 REMARK 500 SER D1135 10.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 1C1G A 1 284 UNP P42639 TPM1_PIG 1 284 DBREF 1C1G B 285 568 UNP P42639 TPM1_PIG 1 284 DBREF 1C1G C 569 852 UNP P42639 TPM1_PIG 1 284 DBREF 1C1G D 853 1136 UNP P42639 TPM1_PIG 1 284 SEQRES 1 A 284 MET ASP ALA ILE LYS LYS LYS MET GLN MET LEU LYS LEU SEQRES 2 A 284 ASP LYS GLU ASN ALA LEU ASP ARG ALA ASP GLU ALA GLU SEQRES 3 A 284 ALA ASP LYS LYS ALA ALA GLU ASP ARG SER LYS GLN LEU SEQRES 4 A 284 GLU ASP GLU LEU VAL SER LEU GLN LYS LYS LEU LYS ALA SEQRES 5 A 284 THR GLU ASP GLU LEU ASP LYS TYR SER GLU ALA LEU LYS SEQRES 6 A 284 ASP ALA GLN GLU LYS LEU GLU LEU ALA GLU LYS LYS ALA SEQRES 7 A 284 THR ASP ALA GLU ALA ASP VAL ALA SER LEU ASN ARG ARG SEQRES 8 A 284 ILE GLN LEU PHE GLU GLU GLU LEU ASP ARG ALA GLN GLU SEQRES 9 A 284 ARG LEU ALA THR ALA LEU GLN LYS LEU GLU GLU ALA GLU SEQRES 10 A 284 LYS ALA ALA ASP GLU SER GLU ARG GLY MET LYS VAL ILE SEQRES 11 A 284 GLU SER ARG ALA GLN LYS ASP GLU GLU LYS MET GLU ILE SEQRES 12 A 284 GLN GLU ILE GLN LEU LYS GLU ALA LYS HIS ILE ALA GLU SEQRES 13 A 284 ASP ALA ASP ARG LYS TYR GLU GLU VAL ALA ARG LYS LEU SEQRES 14 A 284 VAL ILE ILE GLU SER ASP LEU GLU ARG ALA GLU GLU ARG SEQRES 15 A 284 ALA GLU LEU SER GLU GLY LYS CYS ALA GLU LEU GLU GLU SEQRES 16 A 284 GLU ILE LYS THR VAL THR ASN ASN LEU LYS SER LEU GLU SEQRES 17 A 284 ALA GLN ALA GLU LYS TYR SER GLN LYS GLU ASP LYS TYR SEQRES 18 A 284 GLU GLU GLU ILE LYS VAL LEU SER ASP LYS LEU LYS GLU SEQRES 19 A 284 ALA GLU THR ARG ALA GLU PHE ALA GLU ARG SER VAL THR SEQRES 20 A 284 LYS LEU GLU LYS SER ILE ASP ASP LEU GLU ASP GLU LEU SEQRES 21 A 284 TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER GLU GLU SEQRES 22 A 284 LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 B 284 MET ASP ALA ILE LYS LYS LYS MET GLN MET LEU LYS LEU SEQRES 2 B 284 ASP LYS GLU ASN ALA LEU ASP ARG ALA ASP GLU ALA GLU SEQRES 3 B 284 ALA ASP LYS LYS ALA ALA GLU ASP ARG SER LYS GLN LEU SEQRES 4 B 284 GLU ASP GLU LEU VAL SER LEU GLN LYS LYS LEU LYS ALA SEQRES 5 B 284 THR GLU ASP GLU LEU ASP LYS TYR SER GLU ALA LEU LYS SEQRES 6 B 284 ASP ALA GLN GLU LYS LEU GLU LEU ALA GLU LYS LYS ALA SEQRES 7 B 284 THR ASP ALA GLU ALA ASP VAL ALA SER LEU ASN ARG ARG SEQRES 8 B 284 ILE GLN LEU PHE GLU GLU GLU LEU ASP ARG ALA GLN GLU SEQRES 9 B 284 ARG LEU ALA THR ALA LEU GLN LYS LEU GLU GLU ALA GLU SEQRES 10 B 284 LYS ALA ALA ASP GLU SER GLU ARG GLY MET LYS VAL ILE SEQRES 11 B 284 GLU SER ARG ALA GLN LYS ASP GLU GLU LYS MET GLU ILE SEQRES 12 B 284 GLN GLU ILE GLN LEU LYS GLU ALA LYS HIS ILE ALA GLU SEQRES 13 B 284 ASP ALA ASP ARG LYS TYR GLU GLU VAL ALA ARG LYS LEU SEQRES 14 B 284 VAL ILE ILE GLU SER ASP LEU GLU ARG ALA GLU GLU ARG SEQRES 15 B 284 ALA GLU LEU SER GLU GLY LYS CYS ALA GLU LEU GLU GLU SEQRES 16 B 284 GLU ILE LYS THR VAL THR ASN ASN LEU LYS SER LEU GLU SEQRES 17 B 284 ALA GLN ALA GLU LYS TYR SER GLN LYS GLU ASP LYS TYR SEQRES 18 B 284 GLU GLU GLU ILE LYS VAL LEU SER ASP LYS LEU LYS GLU SEQRES 19 B 284 ALA GLU THR ARG ALA GLU PHE ALA GLU ARG SER VAL THR SEQRES 20 B 284 LYS LEU GLU LYS SER ILE ASP ASP LEU GLU ASP GLU LEU SEQRES 21 B 284 TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER GLU GLU SEQRES 22 B 284 LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 C 284 MET ASP ALA ILE LYS LYS LYS MET GLN MET LEU LYS LEU SEQRES 2 C 284 ASP LYS GLU ASN ALA LEU ASP ARG ALA ASP GLU ALA GLU SEQRES 3 C 284 ALA ASP LYS LYS ALA ALA GLU ASP ARG SER LYS GLN LEU SEQRES 4 C 284 GLU ASP GLU LEU VAL SER LEU GLN LYS LYS LEU LYS ALA SEQRES 5 C 284 THR GLU ASP GLU LEU ASP LYS TYR SER GLU ALA LEU LYS SEQRES 6 C 284 ASP ALA GLN GLU LYS LEU GLU LEU ALA GLU LYS LYS ALA SEQRES 7 C 284 THR ASP ALA GLU ALA ASP VAL ALA SER LEU ASN ARG ARG SEQRES 8 C 284 ILE GLN LEU PHE GLU GLU GLU LEU ASP ARG ALA GLN GLU SEQRES 9 C 284 ARG LEU ALA THR ALA LEU GLN LYS LEU GLU GLU ALA GLU SEQRES 10 C 284 LYS ALA ALA ASP GLU SER GLU ARG GLY MET LYS VAL ILE SEQRES 11 C 284 GLU SER ARG ALA GLN LYS ASP GLU GLU LYS MET GLU ILE SEQRES 12 C 284 GLN GLU ILE GLN LEU LYS GLU ALA LYS HIS ILE ALA GLU SEQRES 13 C 284 ASP ALA ASP ARG LYS TYR GLU GLU VAL ALA ARG LYS LEU SEQRES 14 C 284 VAL ILE ILE GLU SER ASP LEU GLU ARG ALA GLU GLU ARG SEQRES 15 C 284 ALA GLU LEU SER GLU GLY LYS CYS ALA GLU LEU GLU GLU SEQRES 16 C 284 GLU ILE LYS THR VAL THR ASN ASN LEU LYS SER LEU GLU SEQRES 17 C 284 ALA GLN ALA GLU LYS TYR SER GLN LYS GLU ASP LYS TYR SEQRES 18 C 284 GLU GLU GLU ILE LYS VAL LEU SER ASP LYS LEU LYS GLU SEQRES 19 C 284 ALA GLU THR ARG ALA GLU PHE ALA GLU ARG SER VAL THR SEQRES 20 C 284 LYS LEU GLU LYS SER ILE ASP ASP LEU GLU ASP GLU LEU SEQRES 21 C 284 TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER GLU GLU SEQRES 22 C 284 LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 D 284 MET ASP ALA ILE LYS LYS LYS MET GLN MET LEU LYS LEU SEQRES 2 D 284 ASP LYS GLU ASN ALA LEU ASP ARG ALA ASP GLU ALA GLU SEQRES 3 D 284 ALA ASP LYS LYS ALA ALA GLU ASP ARG SER LYS GLN LEU SEQRES 4 D 284 GLU ASP GLU LEU VAL SER LEU GLN LYS LYS LEU LYS ALA SEQRES 5 D 284 THR GLU ASP GLU LEU ASP LYS TYR SER GLU ALA LEU LYS SEQRES 6 D 284 ASP ALA GLN GLU LYS LEU GLU LEU ALA GLU LYS LYS ALA SEQRES 7 D 284 THR ASP ALA GLU ALA ASP VAL ALA SER LEU ASN ARG ARG SEQRES 8 D 284 ILE GLN LEU PHE GLU GLU GLU LEU ASP ARG ALA GLN GLU SEQRES 9 D 284 ARG LEU ALA THR ALA LEU GLN LYS LEU GLU GLU ALA GLU SEQRES 10 D 284 LYS ALA ALA ASP GLU SER GLU ARG GLY MET LYS VAL ILE SEQRES 11 D 284 GLU SER ARG ALA GLN LYS ASP GLU GLU LYS MET GLU ILE SEQRES 12 D 284 GLN GLU ILE GLN LEU LYS GLU ALA LYS HIS ILE ALA GLU SEQRES 13 D 284 ASP ALA ASP ARG LYS TYR GLU GLU VAL ALA ARG LYS LEU SEQRES 14 D 284 VAL ILE ILE GLU SER ASP LEU GLU ARG ALA GLU GLU ARG SEQRES 15 D 284 ALA GLU LEU SER GLU GLY LYS CYS ALA GLU LEU GLU GLU SEQRES 16 D 284 GLU ILE LYS THR VAL THR ASN ASN LEU LYS SER LEU GLU SEQRES 17 D 284 ALA GLN ALA GLU LYS TYR SER GLN LYS GLU ASP LYS TYR SEQRES 18 D 284 GLU GLU GLU ILE LYS VAL LEU SER ASP LYS LEU LYS GLU SEQRES 19 D 284 ALA GLU THR ARG ALA GLU PHE ALA GLU ARG SER VAL THR SEQRES 20 D 284 LYS LEU GLU LYS SER ILE ASP ASP LEU GLU ASP GLU LEU SEQRES 21 D 284 TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER GLU GLU SEQRES 22 D 284 LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE HELIX 1 1 MET A 1 ALA A 166 1 166 HELIX 2 2 ALA A 166 MET A 281 1 116 HELIX 3 3 MET B 285 VAL B 449 1 165 HELIX 4 4 VAL B 449 THR B 566 1 118 HELIX 5 5 MET C 569 LEU C 678 1 110 HELIX 6 6 LEU C 678 GLU C 706 1 29 HELIX 7 7 GLU C 707 THR C 850 1 144 HELIX 8 8 MET D 853 ALA D 961 1 109 HELIX 9 9 ALA D 961 ASP D 989 1 29 HELIX 10 10 ASP D 989 VAL D 1017 1 29 HELIX 11 11 VAL D 1017 ALA D 1087 1 71 HELIX 12 12 ALA D 1087 THR D 1134 1 48 CRYST1 259.738 55.300 136.259 90.00 97.42 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003850 0.000000 0.000501 0.00000 SCALE2 0.000000 0.018083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007401 0.00000