HEADER LYASE 27-JUL-99 1C3C TITLE T. MARITIMA ADENYLOSUCCINATE LYASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ADENYLOSUCCINATE LYASE); COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.3.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS PURINE BIOSYNTHESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.A.TOTH,T.O.YEATES REVDAT 4 07-FEB-24 1C3C 1 REMARK REVDAT 3 13-JUL-11 1C3C 1 VERSN REVDAT 2 24-FEB-09 1C3C 1 VERSN REVDAT 1 09-FEB-00 1C3C 0 JRNL AUTH E.A.TOTH,T.O.YEATES JRNL TITL THE STRUCTURE OF ADENYLOSUCCINATE LYASE, AN ENZYME WITH DUAL JRNL TITL 2 ACTIVITY IN THE DE NOVO PURINE BIOSYNTHETIC PATHWAY. JRNL REF STRUCTURE FOLD.DES. V. 8 163 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 10673438 JRNL DOI 10.1016/S0969-2126(00)00092-7 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 117163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5858 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 693 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; NULL REMARK 3 ANGLE DISTANCE (A) : 2.640 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000009412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117163 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAACETATE, 0.5% PEG 4000, 6% REMARK 280 GLYCEROL, PH 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.40450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.37650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.40450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.37650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.50000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.40450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.37650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.50000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.40450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.37650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 25880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 258 REMARK 465 GLN A 259 REMARK 465 ARG A 260 REMARK 465 GLY A 261 REMARK 465 SER A 262 REMARK 465 GLY B 258 REMARK 465 GLN B 259 REMARK 465 ARG B 260 REMARK 465 GLY B 261 REMARK 465 SER B 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU A 17 OE1 OE2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLU A 46 CD OE1 OE2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 LYS A 343 NZ REMARK 470 ARG A 368 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 ARG A 377 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 GLU A 398 CG CD OE1 OE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 GLU B 17 OE1 OE2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 GLU B 46 CD OE1 OE2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ASN B 67 CG OD1 ND2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 LYS B 343 NZ REMARK 470 ARG B 368 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 369 CG CD CE NZ REMARK 470 ARG B 377 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 387 CG CD CE NZ REMARK 470 GLU B 391 CG CD OE1 OE2 REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 LYS B 401 CG CD CE NZ REMARK 470 GLU B 406 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 410 OE2 GLU B 36 5455 1.90 REMARK 500 OE2 GLU A 410 OE2 GLU B 36 5455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 9 CA - N - CD ANGL. DEV. = -12.1 DEGREES REMARK 500 PRO A 9 N - CA - CB ANGL. DEV. = 7.9 DEGREES REMARK 500 PRO A 9 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 21 CD - NE - CZ ANGL. DEV. = 27.6 DEGREES REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 MET A 39 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 LEU A 113 CB - CG - CD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR A 187 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 VAL A 209 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG A 216 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 282 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 285 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU A 300 OE1 - CD - OE2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 301 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 310 CD - NE - CZ ANGL. DEV. = 20.9 DEGREES REMARK 500 ARG A 310 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 310 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 LEU A 320 CB - CG - CD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 TYR A 321 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 340 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLU A 410 OE1 - CD - OE2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP A 422 CB - CG - OD1 ANGL. DEV. = -8.9 DEGREES REMARK 500 ASP A 422 CB - CG - OD2 ANGL. DEV. = 17.1 DEGREES REMARK 500 GLU A 426 OE1 - CD - OE2 ANGL. DEV. = -12.7 DEGREES REMARK 500 GLU A 429 CA - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 GLU A 429 O - C - N ANGL. DEV. = -16.2 DEGREES REMARK 500 LYS A 430 C - N - CA ANGL. DEV. = 34.8 DEGREES REMARK 500 PRO B 9 CA - N - CD ANGL. DEV. = -11.4 DEGREES REMARK 500 PRO B 9 N - CA - CB ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG B 21 CD - NE - CZ ANGL. DEV. = 23.2 DEGREES REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 22 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU B 24 CB - CG - CD2 ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU B 37 CB - CG - CD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 MET B 39 CG - SD - CE ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP B 84 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU B 113 CB - CG - CD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG B 130 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 139 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU B 155 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 LEU B 155 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 -26.94 -22.65 REMARK 500 ALA A 145 -90.31 -115.75 REMARK 500 THR A 211 -138.35 -101.57 REMARK 500 ARG A 256 -87.47 -15.50 REMARK 500 HIS A 299 -128.59 51.14 REMARK 500 ARG A 301 152.51 152.29 REMARK 500 SER B 8 172.54 -53.13 REMARK 500 PRO B 9 -36.91 -3.24 REMARK 500 ALA B 145 -94.86 -116.68 REMARK 500 THR B 211 -136.15 -105.35 REMARK 500 ARG B 256 -89.32 -9.18 REMARK 500 HIS B 299 -128.45 43.78 REMARK 500 ARG B 301 154.00 153.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 8 PRO A 9 -67.34 REMARK 500 GLU A 429 LYS A 430 141.08 REMARK 500 SER B 8 PRO B 9 -88.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 8 -12.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 1C3C A 2 430 UNP Q9X0I0 PUR8_THEMA 2 430 DBREF 1C3C B 2 430 GB 4981640 AAD36171 2 430 SEQRES 1 A 429 VAL GLU ARG TYR SER LEU SER PRO MET LYS ASP LEU TRP SEQRES 2 A 429 THR GLU GLU ALA LYS TYR ARG ARG TRP LEU GLU VAL GLU SEQRES 3 A 429 LEU ALA VAL THR ARG ALA TYR GLU GLU LEU GLY MET ILE SEQRES 4 A 429 PRO LYS GLY VAL THR GLU ARG ILE ARG ASN ASN ALA LYS SEQRES 5 A 429 ILE ASP VAL GLU LEU PHE LYS LYS ILE GLU GLU LYS THR SEQRES 6 A 429 ASN HIS ASP VAL VAL ALA PHE VAL GLU GLY ILE GLY SER SEQRES 7 A 429 MET ILE GLY GLU ASP SER ARG PHE PHE HIS TYR GLY LEU SEQRES 8 A 429 THR SER SER ASP VAL LEU ASP THR ALA ASN SER LEU ALA SEQRES 9 A 429 LEU VAL GLU ALA GLY LYS ILE LEU LEU GLU SER LEU LYS SEQRES 10 A 429 GLU PHE CYS ASP VAL LEU TRP GLU VAL ALA ASN ARG TYR SEQRES 11 A 429 LYS HIS THR PRO THR ILE GLY ARG THR HIS GLY VAL HIS SEQRES 12 A 429 ALA GLU PRO THR SER PHE GLY LEU LYS VAL LEU GLY TRP SEQRES 13 A 429 TYR SER GLU MET LYS ARG ASN VAL GLN ARG LEU GLU ARG SEQRES 14 A 429 ALA ILE GLU GLU VAL SER TYR GLY LYS ILE SER GLY ALA SEQRES 15 A 429 VAL GLY ASN TYR ALA ASN VAL PRO PRO GLU VAL GLU GLU SEQRES 16 A 429 LYS ALA LEU SER TYR LEU GLY LEU LYS PRO GLU PRO VAL SEQRES 17 A 429 SER THR GLN VAL VAL PRO ARG ASP ARG HIS ALA PHE TYR SEQRES 18 A 429 LEU SER THR LEU ALA ILE VAL ALA ALA GLY ILE GLU ARG SEQRES 19 A 429 ILE ALA VAL GLU ILE ARG HIS LEU GLN ARG THR GLU VAL SEQRES 20 A 429 LEU GLU VAL GLU GLU PRO PHE ARG LYS GLY GLN ARG GLY SEQRES 21 A 429 SER SER ALA MET PRO HIS LYS LYS ASN PRO ILE THR CYS SEQRES 22 A 429 GLU ARG LEU THR GLY LEU SER ARG MET MET ARG ALA TYR SEQRES 23 A 429 VAL ASP PRO SER LEU GLU ASN ILE ALA LEU TRP HIS GLU SEQRES 24 A 429 ARG ASP ILE SER HIS SER SER VAL GLU ARG TYR VAL PHE SEQRES 25 A 429 PRO ASP ALA THR GLN THR LEU TYR TYR MET ILE VAL THR SEQRES 26 A 429 ALA THR ASN VAL VAL ARG ASN MET LYS VAL ASN GLU GLU SEQRES 27 A 429 ARG MET LYS LYS ASN ILE ASP LEU THR LYS GLY LEU VAL SEQRES 28 A 429 PHE SER GLN ARG VAL LEU LEU LYS LEU ILE GLU LYS GLY SEQRES 29 A 429 LEU THR ARG LYS GLU ALA TYR ASP ILE VAL GLN ARG ASN SEQRES 30 A 429 ALA LEU LYS THR TRP ASN SER GLU LYS HIS PHE LEU GLU SEQRES 31 A 429 TYR LEU LEU GLU ASP GLU GLU VAL LYS LYS LEU VAL THR SEQRES 32 A 429 LYS GLU GLU LEU GLU GLU LEU PHE ASP ILE SER TYR TYR SEQRES 33 A 429 LEU LYS HIS VAL ASP HIS ILE PHE GLU ARG PHE GLU LYS SEQRES 1 B 429 VAL GLU ARG TYR SER LEU SER PRO MET LYS ASP LEU TRP SEQRES 2 B 429 THR GLU GLU ALA LYS TYR ARG ARG TRP LEU GLU VAL GLU SEQRES 3 B 429 LEU ALA VAL THR ARG ALA TYR GLU GLU LEU GLY MET ILE SEQRES 4 B 429 PRO LYS GLY VAL THR GLU ARG ILE ARG ASN ASN ALA LYS SEQRES 5 B 429 ILE ASP VAL GLU LEU PHE LYS LYS ILE GLU GLU LYS THR SEQRES 6 B 429 ASN HIS ASP VAL VAL ALA PHE VAL GLU GLY ILE GLY SER SEQRES 7 B 429 MET ILE GLY GLU ASP SER ARG PHE PHE HIS TYR GLY LEU SEQRES 8 B 429 THR SER SER ASP VAL LEU ASP THR ALA ASN SER LEU ALA SEQRES 9 B 429 LEU VAL GLU ALA GLY LYS ILE LEU LEU GLU SER LEU LYS SEQRES 10 B 429 GLU PHE CYS ASP VAL LEU TRP GLU VAL ALA ASN ARG TYR SEQRES 11 B 429 LYS HIS THR PRO THR ILE GLY ARG THR HIS GLY VAL HIS SEQRES 12 B 429 ALA GLU PRO THR SER PHE GLY LEU LYS VAL LEU GLY TRP SEQRES 13 B 429 TYR SER GLU MET LYS ARG ASN VAL GLN ARG LEU GLU ARG SEQRES 14 B 429 ALA ILE GLU GLU VAL SER TYR GLY LYS ILE SER GLY ALA SEQRES 15 B 429 VAL GLY ASN TYR ALA ASN VAL PRO PRO GLU VAL GLU GLU SEQRES 16 B 429 LYS ALA LEU SER TYR LEU GLY LEU LYS PRO GLU PRO VAL SEQRES 17 B 429 SER THR GLN VAL VAL PRO ARG ASP ARG HIS ALA PHE TYR SEQRES 18 B 429 LEU SER THR LEU ALA ILE VAL ALA ALA GLY ILE GLU ARG SEQRES 19 B 429 ILE ALA VAL GLU ILE ARG HIS LEU GLN ARG THR GLU VAL SEQRES 20 B 429 LEU GLU VAL GLU GLU PRO PHE ARG LYS GLY GLN ARG GLY SEQRES 21 B 429 SER SER ALA MET PRO HIS LYS LYS ASN PRO ILE THR CYS SEQRES 22 B 429 GLU ARG LEU THR GLY LEU SER ARG MET MET ARG ALA TYR SEQRES 23 B 429 VAL ASP PRO SER LEU GLU ASN ILE ALA LEU TRP HIS GLU SEQRES 24 B 429 ARG ASP ILE SER HIS SER SER VAL GLU ARG TYR VAL PHE SEQRES 25 B 429 PRO ASP ALA THR GLN THR LEU TYR TYR MET ILE VAL THR SEQRES 26 B 429 ALA THR ASN VAL VAL ARG ASN MET LYS VAL ASN GLU GLU SEQRES 27 B 429 ARG MET LYS LYS ASN ILE ASP LEU THR LYS GLY LEU VAL SEQRES 28 B 429 PHE SER GLN ARG VAL LEU LEU LYS LEU ILE GLU LYS GLY SEQRES 29 B 429 LEU THR ARG LYS GLU ALA TYR ASP ILE VAL GLN ARG ASN SEQRES 30 B 429 ALA LEU LYS THR TRP ASN SER GLU LYS HIS PHE LEU GLU SEQRES 31 B 429 TYR LEU LEU GLU ASP GLU GLU VAL LYS LYS LEU VAL THR SEQRES 32 B 429 LYS GLU GLU LEU GLU GLU LEU PHE ASP ILE SER TYR TYR SEQRES 33 B 429 LEU LYS HIS VAL ASP HIS ILE PHE GLU ARG PHE GLU LYS FORMUL 3 HOH *693(H2 O) HELIX 1 1 VAL A 2 SER A 6 5 5 HELIX 2 2 PRO A 9 TRP A 14 1 6 HELIX 3 3 THR A 15 LEU A 37 1 23 HELIX 4 4 GLY A 43 ALA A 52 1 10 HELIX 5 5 ASP A 55 ASN A 67 1 13 HELIX 6 6 HIS A 68 GLY A 82 1 15 HELIX 7 7 GLU A 83 PHE A 88 5 6 HELIX 8 8 THR A 93 TYR A 131 1 39 HELIX 9 9 PHE A 150 VAL A 175 1 26 HELIX 10 10 PRO A 191 LEU A 202 1 12 HELIX 11 11 ARG A 216 GLN A 244 1 29 HELIX 12 12 PRO A 271 TYR A 287 1 17 HELIX 13 13 TYR A 287 ASN A 294 1 8 HELIX 14 14 ILE A 303 MET A 334 1 32 HELIX 15 15 ASN A 337 ASP A 346 1 10 HELIX 16 16 GLY A 350 VAL A 352 5 3 HELIX 17 17 PHE A 353 LYS A 364 1 12 HELIX 18 18 THR A 367 ASN A 384 1 18 HELIX 19 19 HIS A 388 GLU A 395 1 8 HELIX 20 20 ASP A 396 LYS A 401 1 6 HELIX 21 21 THR A 404 LEU A 411 1 8 HELIX 22 22 ILE A 414 LYS A 419 1 6 HELIX 23 23 HIS A 420 ARG A 427 1 8 HELIX 24 24 VAL B 2 SER B 6 5 5 HELIX 25 25 PRO B 9 TRP B 14 1 6 HELIX 26 26 THR B 15 LEU B 37 1 23 HELIX 27 27 GLY B 43 ALA B 52 1 10 HELIX 28 28 ASP B 55 ASN B 67 1 13 HELIX 29 29 HIS B 68 GLY B 82 1 15 HELIX 30 30 GLU B 83 PHE B 88 5 6 HELIX 31 31 THR B 93 TYR B 131 1 39 HELIX 32 32 PHE B 150 VAL B 175 1 26 HELIX 33 33 PRO B 191 LEU B 202 1 12 HELIX 34 34 ARG B 216 GLN B 244 1 29 HELIX 35 35 PRO B 271 TYR B 287 1 17 HELIX 36 36 TYR B 287 ASN B 294 1 8 HELIX 37 37 ILE B 303 MET B 334 1 32 HELIX 38 38 ASN B 337 ASP B 346 1 10 HELIX 39 39 GLY B 350 VAL B 352 5 3 HELIX 40 40 PHE B 353 LYS B 364 1 12 HELIX 41 41 THR B 367 ASN B 384 1 18 HELIX 42 42 HIS B 388 GLU B 395 1 8 HELIX 43 43 ASP B 396 LYS B 401 1 6 HELIX 44 44 THR B 404 LEU B 411 1 8 HELIX 45 45 ILE B 414 LYS B 419 1 6 HELIX 46 46 HIS B 420 ARG B 427 1 8 SHEET 1 A 2 PRO A 135 THR A 140 0 SHEET 2 A 2 VAL A 143 SER A 149 -1 O VAL A 143 N THR A 140 SHEET 1 B 2 TYR A 177 GLY A 178 0 SHEET 2 B 2 LYS A 205 PRO A 206 1 O LYS A 205 N GLY A 178 SHEET 1 C 2 VAL A 251 GLU A 252 0 SHEET 2 C 2 LYS A 335 VAL A 336 -1 N LYS A 335 O GLU A 252 SHEET 1 D 2 PRO B 135 THR B 140 0 SHEET 2 D 2 VAL B 143 SER B 149 -1 O VAL B 143 N THR B 140 SHEET 1 E 2 TYR B 177 GLY B 178 0 SHEET 2 E 2 LYS B 205 PRO B 206 1 O LYS B 205 N GLY B 178 SHEET 1 F 2 VAL B 251 GLU B 252 0 SHEET 2 F 2 LYS B 335 VAL B 336 -1 N LYS B 335 O GLU B 252 CRYST1 120.809 126.753 169.000 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005920 0.00000