HEADER SIGNALING PROTEIN 21-AUG-99 1C4F TITLE GREEN FLUORESCENT PROTEIN S65T AT PH 4.6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 ORGAN: PHOTOGENIC ORGAN; SOURCE 5 TISSUE: CIRCUMORAL RING CANAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109 (DE3); SOURCE 9 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 OTHER_DETAILS: THE N-TERMINAL HIS-TAG HAS BEEN REMOVED KEYWDS GREENFLUORESCENT PROTEIN, BIOLUMINESCENCE, PHOTOACTIVE PROTEIN, KEYWDS 2 FLUORESCENT TAG, PH TITRATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ELSLIGER,R.M.WACHTER,K.KALLIO,G.T.HANSON,S.J.REMINGTON REVDAT 9 15-NOV-23 1C4F 1 REMARK REVDAT 8 09-AUG-23 1C4F 1 REMARK REVDAT 7 03-NOV-21 1C4F 1 REMARK SEQADV LINK REVDAT 6 04-OCT-17 1C4F 1 REMARK REVDAT 5 12-MAY-09 1C4F 1 SEQADV REVDAT 4 24-FEB-09 1C4F 1 VERSN REVDAT 3 01-APR-03 1C4F 1 JRNL REVDAT 2 14-JUN-00 1C4F 1 DBREF REMARK REVDAT 1 31-AUG-99 1C4F 0 JRNL AUTH M.A.ELSLIGER,R.M.WACHTER,G.T.HANSON,K.KALLIO,S.J.REMINGTON JRNL TITL STRUCTURAL AND SPECTRAL RESPONSE OF GREEN FLUORESCENT JRNL TITL 2 PROTEIN VARIANTS TO CHANGES IN PH. JRNL REF BIOCHEMISTRY V. 38 5296 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10220315 JRNL DOI 10.1021/BI9902182 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.M.WACHTER,M.A.ELSLIGER,K.KALLIO,G.T.HANSON,S.J.REMINGTON REMARK 1 TITL STRUCTURAL BASIS OF SPECTRAL SHIFTS IN THE YELLOW-EMISSION REMARK 1 TITL 2 VARIANTS OF GREEN FLUORESCENT PROTEIN REMARK 1 REF STRUCTURE V. 6 1267 1998 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(98)00127-0 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.M.WACHTER,B.A.KING,R.HEIM,K.KALLIO,R.Y.TSIEN,S.G.BOXER, REMARK 1 AUTH 2 S.J.REMINGTON REMARK 1 TITL CRYSTAL STRUCTURE AND PHOTODYNAMIC BEHAVIOR OF THE BLUE REMARK 1 TITL 2 EMISSION VARIANT Y66H/ Y145F OF GREEN FLUORESCENT PROTEIN REMARK 1 REF BIOCHEMISTRY V. 36 9759 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI970563W REMARK 1 REFERENCE 3 REMARK 1 AUTH M.ORMO,A.B.CUBITT,K.KALLIO,L.A.GROSS,R.Y.TSIEN,S.J.REMINGTON REMARK 1 TITL CRYSTAL STRUCTURE OF THE AEQUOREA VICTORIA GREEN FLUORESCENT REMARK 1 TITL 2 PROTEIN REMARK 1 REF SCIENCE V. 273 1392 1996 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5F REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 14685 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 34.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; 0.600 ; 1855 REMARK 3 BOND ANGLES (DEGREES) : 2.197 ; 1.100 ; 2501 REMARK 3 TORSION ANGLES (DEGREES) : 20.197; 0.000 ; 1082 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.004 ; 2.000 ; 52 REMARK 3 GENERAL PLANES (A) : 0.009 ; 5.000 ; 265 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 4.135 ; 1.000 ; 1841 REMARK 3 NON-BONDED CONTACTS (A) : 0.019 ; 10.000; 19 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BABINET SCALING REMARK 3 KSOL : 0.82 REMARK 3 BSOL : 140.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000001292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14685 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 24.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4, PROTEIN REMARK 200 STARTING MODEL: 1EMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-13% PEG 3400, 100MM SODIUM ACETATE REMARK 280 AND 100 MM AMMONIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.96700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.58600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.44900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.58600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.96700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.44900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 230 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CB CG CD CE NZ REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 ASP A 19 OD2 REMARK 470 LYS A 26 NZ REMARK 470 GLU A 34 CD OE1 OE2 REMARK 470 LYS A 52 CD CE NZ REMARK 470 LYS A 79 CD CE NZ REMARK 470 GLU A 90 OE2 REMARK 470 GLU A 95 OE1 REMARK 470 LYS A 101 CD CE NZ REMARK 470 LYS A 107 CD CE NZ REMARK 470 LYS A 113 NZ REMARK 470 ASP A 117 OD2 REMARK 470 ARG A 122 CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 ASP A 129 OD1 OD2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 GLU A 132 CD OE1 OE2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 LYS A 140 CD REMARK 470 GLU A 142 CD OE1 OE2 REMARK 470 ASN A 149 ND2 REMARK 470 ASP A 155 OD2 REMARK 470 LYS A 156 CD CE NZ REMARK 470 GLN A 157 CB CG CD OE1 NE2 REMARK 470 LYS A 158 CB CG CD CE NZ REMARK 470 ASN A 159 OD1 REMARK 470 LYS A 162 CE NZ REMARK 470 ASN A 164 OD1 REMARK 470 LYS A 166 CE NZ REMARK 470 ILE A 171 CD1 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 ASP A 190 CG OD1 OD2 REMARK 470 ASN A 212 CG OD1 ND2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 5 CD OE1 OE2 REMARK 480 ARG A 109 NH2 REMARK 480 GLU A 111 CD REMARK 480 ARG A 168 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 168 NH2 REMARK 480 ASP A 197 OD1 REMARK 480 GLN A 204 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C MET A 88 CD PRO A 89 1.35 REMARK 500 O MET A 88 CD PRO A 89 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 95 CD GLU A 95 OE2 0.066 REMARK 500 GLU A 111 CD GLU A 111 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 5 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 MET A 88 O - C - N ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO A 89 C - N - CA ANGL. DEV. = 27.9 DEGREES REMARK 500 PRO A 89 C - N - CD ANGL. DEV. = -72.4 DEGREES REMARK 500 PRO A 89 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 ASP A 102 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 TYR A 106 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 106 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 168 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP A 173 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 173 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 210 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 PRO A 211 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP A 216 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 216 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 88 150.92 -45.82 REMARK 500 PRO A 89 -65.92 77.21 REMARK 500 ASP A 103 -159.79 -148.33 REMARK 500 ASP A 133 35.27 -95.25 REMARK 500 ASP A 155 62.06 -117.71 REMARK 500 LYS A 156 -34.01 -39.72 REMARK 500 GLN A 157 -76.57 -58.61 REMARK 500 LYS A 158 18.92 -66.24 REMARK 500 PHE A 165 158.89 176.35 REMARK 500 HIS A 199 -170.03 -170.93 REMARK 500 ALA A 227 -156.47 -157.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CRO REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CONTAINS A COVALENTLY ATTACHED CHROMOPHORE, REMARK 800 WHICH IS COMPOSED OF MODIFIED AMINO ACID RESIDUES. THE REMARK 800 CHROMOPHORE IS FORMED UPON POSTTRANSLATIONAL CYCLIZATION OF THE REMARK 800 RESIDUES SER65-DEHYDROTYR66-GLY67. REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-3 NOT SEEN IN DENSITY MAPS REMARK 999 RESIDUES 230-238 NOT SEEN IN DENSITY MAPS REMARK 999 REMARK 999 THE FLUOROPHORE (CRO) IS GENERATED BY AN AUTOCATALYTIC REMARK 999 CYCLIZATION OF THE POLYPEPTIDE BACKBONE BETWEEN THE REMARK 999 NITROGEN OF GLY 67 AND THE CARBONYL CARBON OF THR 65. THE REMARK 999 CARBONYL OXYGEN OF THR 65 LEAVES AS WATER, AND IS NOT REMARK 999 PRESENT IN THE MODEL. A SUBSEQUENT OXIDATION OF THE CA - CB REMARK 999 BOND OF TYR 66 LINKS THE CONJUGATED SYSTEM OF THE TYROSINE REMARK 999 RING TO THAT OF THE FORMED BACKBONE IMIDAZOLIDINONE. REMARK 999 RESIDUES 65, 66, AND 67 ARE NOT PRESENT IN THE ENTRY AND REMARK 999 ARE INSTEAD REPLACED WITH CRO 66. DBREF 1C4F A 1 238 UNP P42212 GFP_AEQVI 1 238 SEQADV 1C4F CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 1C4F CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 1C4F CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 1C4F ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQRES 1 A 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 A 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO SEQRES 6 A 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 A 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 A 236 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 A 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 A 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 236 ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS ASP SEQRES 17 A 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 A 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 A 236 TYR LYS MODRES 1C4F CRO A 66 GLY MODRES 1C4F CRO A 66 TYR MODRES 1C4F CRO A 66 GLY HET CRO A 66 22 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 HOH *62(H2 O) HELIX 1 1 GLU A 5 PHE A 8 5 4 HELIX 2 2 TRP A 57 THR A 59 5 3 HELIX 3 3 GLN A 69 PHE A 71 5 3 HELIX 4 4 ASP A 76 HIS A 81 5 6 HELIX 5 5 PHE A 83 ALA A 87 1 5 SHEET 1 A12 HIS A 25 GLY A 35 0 SHEET 2 A12 VAL A 12 VAL A 22 -1 N VAL A 22 O HIS A 25 SHEET 3 A12 THR A 118 ILE A 128 1 N LEU A 119 O LEU A 15 SHEET 4 A12 ASN A 105 GLU A 115 -1 N GLU A 115 O THR A 118 SHEET 5 A12 TYR A 92 PHE A 100 -1 N ILE A 98 O TYR A 106 SHEET 6 A12 VAL A 176 PRO A 187 -1 N THR A 186 O VAL A 93 SHEET 7 A12 GLY A 160 ASN A 170 -1 N HIS A 169 O GLN A 177 SHEET 8 A12 HIS A 148 ASP A 155 -1 N ASP A 155 O GLY A 160 SHEET 9 A12 HIS A 199 SER A 208 -1 N THR A 203 O HIS A 148 SHEET 10 A12 HIS A 217 ALA A 227 -1 N ALA A 227 O TYR A 200 SHEET 11 A12 LYS A 41 CYS A 48 -1 N PHE A 46 O MET A 218 SHEET 12 A12 VAL A 29 ASP A 36 -1 N ASP A 36 O LYS A 41 LINK C PHE A 64 N1 CRO A 66 1555 1555 1.32 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.32 SITE 1 CRO 1 CRO A 66 CRYST1 51.934 62.898 69.172 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019255 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014457 0.00000