HEADER RECOMBINATION/DNA 03-APR-00 1C7Y TITLE E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*DAP*DAP*DGP*DTP*DTP*DGP*DGP*DGP*DAP*DTP*DTP*DGP*DT)-3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*DCP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DAP*DAP*DGP*DC)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(P*DGP*DCP*DTP*DTP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DGP*DA)-3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA (5'- COMPND 18 D(P*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DGP*DAP*DA)-3'); COMPND 19 CHAIN: E; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: DNA (5'- COMPND 23 D(P*DTP*DTP*DCP*DAP*DCP*DCP*DCP*DTP*DAP*DAP*DCP*DCP*DA)-3'); COMPND 24 CHAIN: F; COMPND 25 ENGINEERED: YES; COMPND 26 MOL_ID: 6; COMPND 27 MOLECULE: DNA (5'- COMPND 28 D(P*DGP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DTP*DTP*DCP*DG)-3'); COMPND 29 CHAIN: G; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 7; COMPND 32 MOLECULE: DNA (5'- COMPND 33 D(P*DCP*DGP*DAP*DAP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DCP*DT)-3'); COMPND 34 CHAIN: H; COMPND 35 ENGINEERED: YES; COMPND 36 MOL_ID: 8; COMPND 37 MOLECULE: DNA (5'- COMPND 38 D(P*DCP*DAP*DAP*DTP*DCP*DCP*DCP*DAP*DAP*DCP*DTP*DT)-3'); COMPND 39 CHAIN: I; COMPND 40 ENGINEERED: YES; COMPND 41 MOL_ID: 9; COMPND 42 MOLECULE: HOLLIDAY JUNCTION DNA HELICASE RUVA; COMPND 43 CHAIN: A; COMPND 44 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 4; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 5; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 6; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 7; SOURCE 14 SYNTHETIC: YES; SOURCE 15 MOL_ID: 8; SOURCE 16 SYNTHETIC: YES; SOURCE 17 MOL_ID: 9; SOURCE 18 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 19 ORGANISM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HELIX-HAIRPIN-HELIX, PROTEIN-DNA COMPLEX, HOMOLOGOUS RECOMBINATION, KEYWDS 2 HOLLIDAY JUNCTION, RECOMBINATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ARIYOSHI,T.NISHINO,H.IWASAKI,H.SHINAGAWA,K.MORIKAWA REVDAT 3 27-DEC-23 1C7Y 1 REMARK REVDAT 2 24-FEB-09 1C7Y 1 VERSN REVDAT 1 21-JUL-00 1C7Y 0 JRNL AUTH M.ARIYOSHI,T.NISHINO,H.IWASAKI,H.SHINAGAWA,K.MORIKAWA JRNL TITL CRYSTAL STRUCTURE OF THE HOLLIDAY JUNCTION DNA IN COMPLEX JRNL TITL 2 WITH A SINGLE RUVA TETRAMER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 8257 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 10890893 JRNL DOI 10.1073/PNAS.140212997 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3475770.710 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 631 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 705 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 86 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1527 REMARK 3 NUCLEIC ACID ATOMS : 2038 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.43 REMARK 3 BSOL : 88.29 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-00. REMARK 100 THE DEPOSITION ID IS D_1000001447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7136 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 47.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CHLORIDE, REMARK 280 GLYCEROL, MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 79.32500 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 79.32500 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 79.32500 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 79.32500 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 79.32500 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 79.32500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 36-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, E, F, G, H, I, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 151 REMARK 465 ALA A 152 REMARK 465 SER A 153 REMARK 465 PRO A 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DA E 505 NH1 ARG A 123 2.14 REMARK 500 OP1 DG C 505 NH1 ARG A 123 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG A 104 NH1 ARG A 104 13555 1.89 REMARK 500 NH2 ARG A 186 OD2 ASP A 188 5555 1.91 REMARK 500 NH1 ARG A 104 NH1 ARG A 104 13555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 116 C GLY A 117 N 0.270 REMARK 500 GLY A 117 CA GLY A 117 C 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 C - N - CA ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 54 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 ILE A 116 CB - CA - C ANGL. DEV. = -28.0 DEGREES REMARK 500 GLY A 117 C - N - CA ANGL. DEV. = -15.0 DEGREES REMARK 500 GLY A 134 N - CA - C ANGL. DEV. = -29.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 124 -80.79 -47.63 REMARK 500 ILE A 125 -32.97 -39.10 REMARK 500 LYS A 129 -73.63 -45.02 REMARK 500 PHE A 132 -174.17 -54.89 REMARK 500 LYS A 133 112.07 51.22 REMARK 500 ALA A 185 82.67 45.44 REMARK 500 ARG A 186 58.46 -167.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 132 -14.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HJP RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN WITHOUT DNA DBREF 1C7Y A 1 203 UNP P0A809 RUVA_ECOLI 1 203 DBREF 1C7Y B 401 413 PDB 1C7Y 1C7Y 401 413 DBREF 1C7Y C 501 512 PDB 1C7Y 1C7Y 501 512 DBREF 1C7Y D 401 413 PDB 1C7Y 1C7Y 401 413 DBREF 1C7Y E 501 512 PDB 1C7Y 1C7Y 501 512 DBREF 1C7Y F 401 413 PDB 1C7Y 1C7Y 401 413 DBREF 1C7Y G 501 512 PDB 1C7Y 1C7Y 501 512 DBREF 1C7Y H 401 413 PDB 1C7Y 1C7Y 401 413 DBREF 1C7Y I 501 512 PDB 1C7Y 1C7Y 501 512 SEQRES 1 B 13 DA DA DG DT DT DG DG DG DA DT DT DG DT SEQRES 1 C 12 DC DT DG DT DG DT DG DT DA DA DG DC SEQRES 1 D 13 DG DC DT DT DA DC DA DC DA DC DA DG DA SEQRES 1 E 12 DG DG DT DT DA DG DG DG DT DG DA DA SEQRES 1 F 13 DT DT DC DA DC DC DC DT DA DA DC DC DA SEQRES 1 G 12 DG DA DC DA DC DA DC DA DT DT DC DG SEQRES 1 H 13 DC DG DA DA DT DG DT DG DT DG DT DC DT SEQRES 1 I 12 DC DA DA DT DC DC DC DA DA DC DT DT SEQRES 1 A 203 MET ILE GLY ARG LEU ARG GLY ILE ILE ILE GLU LYS GLN SEQRES 2 A 203 PRO PRO LEU VAL LEU ILE GLU VAL GLY GLY VAL GLY TYR SEQRES 3 A 203 GLU VAL HIS MET PRO MET THR CYS PHE TYR GLU LEU PRO SEQRES 4 A 203 GLU ALA GLY GLN GLU ALA ILE VAL PHE THR HIS PHE VAL SEQRES 5 A 203 VAL ARG GLU ASP ALA GLN LEU LEU TYR GLY PHE ASN ASN SEQRES 6 A 203 LYS GLN GLU ARG THR LEU PHE LYS GLU LEU ILE LYS THR SEQRES 7 A 203 ASN GLY VAL GLY PRO LYS LEU ALA LEU ALA ILE LEU SER SEQRES 8 A 203 GLY MET SER ALA GLN GLN PHE VAL ASN ALA VAL GLU ARG SEQRES 9 A 203 GLU GLU VAL GLY ALA LEU VAL LYS LEU PRO GLY ILE GLY SEQRES 10 A 203 LYS LYS THR ALA GLU ARG LEU ILE VAL GLU MET LYS ASP SEQRES 11 A 203 ARG PHE LYS GLY LEU HIS GLY ASP LEU PHE THR PRO ALA SEQRES 12 A 203 ALA ASP LEU VAL LEU THR SER PRO ALA SER PRO ALA THR SEQRES 13 A 203 ASP ASP ALA GLU GLN GLU ALA VAL ALA ALA LEU VAL ALA SEQRES 14 A 203 LEU GLY TYR LYS PRO GLN GLU ALA SER ARG MET VAL SER SEQRES 15 A 203 LYS ILE ALA ARG PRO ASP ALA SER SER GLU THR LEU ILE SEQRES 16 A 203 ARG GLU ALA LEU ARG ALA ALA LEU HELIX 1 1 PRO A 31 TYR A 36 1 6 HELIX 2 2 ASN A 65 THR A 78 1 14 HELIX 3 3 GLY A 82 MET A 93 1 12 HELIX 4 4 SER A 94 ARG A 104 1 11 HELIX 5 5 GLU A 106 LYS A 112 1 7 HELIX 6 6 GLY A 117 ASP A 130 1 14 HELIX 7 7 ALA A 143 SER A 150 1 8 HELIX 8 8 ASP A 157 LEU A 170 1 14 HELIX 9 9 LYS A 173 ALA A 185 1 13 HELIX 10 10 SER A 190 LEU A 203 1 14 SHEET 1 A 6 ARG A 4 GLN A 13 0 SHEET 2 A 6 LEU A 16 VAL A 21 -1 O GLU A 20 N ILE A 8 SHEET 3 A 6 VAL A 24 HIS A 29 -1 O VAL A 24 N VAL A 21 SHEET 4 A 6 LEU A 60 PHE A 63 1 O LEU A 60 N HIS A 29 SHEET 5 A 6 GLU A 44 PHE A 51 -1 N HIS A 50 O TYR A 61 SHEET 6 A 6 ARG A 4 GLN A 13 -1 N GLY A 7 O ALA A 45 CISPEP 1 PRO A 14 PRO A 15 0 0.22 CRYST1 158.650 158.650 158.650 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006303 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006303 0.00000