HEADER DNA BINDING PROTEIN/DNA 04-MAY-00 1C8C TITLE CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D BOUND TO TITLE 2 DNA CONTAINING T-G MISMATCHED BASE PAIRS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3'; COMPND 3 CHAIN: B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA-BINDING PROTEIN 7A; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: SSO7D, 7 KDA DNA-BINDING PROTEIN D SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 5 ORGANISM_TAXID: 2287; SOURCE 6 ATCC: DSM 1617; SOURCE 7 COLLECTION: DSM 1617; SOURCE 8 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) 1617, #1616 KEYWDS DNA BINDING PROTEIN, PROTEIN-DNA INTERACTION, PROTEIN STABILITY, KEYWDS 2 HYPERTHERMOPHILE, ACHAEABACTERIA, ELECTROSTATICS, MOLECULAR KEYWDS 3 MODELING, T-G MISMATCH, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SU,Y.-G.GAO,H.ROBINSON,Y.-C.LIAW,S.P.EDMONDSON,J.W.SHRIVER,A.H.- AUTHOR 2 J.WANG REVDAT 5 09-AUG-23 1C8C 1 REMARK REVDAT 4 04-OCT-17 1C8C 1 REMARK REVDAT 3 24-FEB-09 1C8C 1 VERSN REVDAT 2 01-APR-03 1C8C 1 JRNL REVDAT 1 04-MAY-01 1C8C 0 JRNL AUTH S.SU,Y.G.GAO,H.ROBINSON,Y.C.LIAW,S.P.EDMONDSON,J.W.SHRIVER, JRNL AUTH 2 A.H.WANG JRNL TITL CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D JRNL TITL 2 BOUND TO DNA CONTAINING T-G MISMATCHED BASE-PAIRS. JRNL REF J.MOL.BIOL. V. 303 395 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 11031116 JRNL DOI 10.1006/JMBI.2000.4112 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 72.2 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : EVERY 20TH REFLECTION REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.229 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.229 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 884 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 17583 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.229 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.200 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 587 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 11754 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 506 REMARK 3 NUCLEIC ACID ATOMS : 324 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000001461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1AZP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 1.3MM REMARK 280 SSO7D, 1.3MM DUPLEX DNA, 2.5 MM TRIS (PH 6.5), 2.5% PEG 400, REMARK 280 EQUILIBRATED AGAINST 15% PEG 400 AT PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.73750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.84050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 18.84050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.73750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 41 H2 HOH A 1044 0.80 REMARK 500 HZ3 LYS A 49 H1 HOH A 1116 0.87 REMARK 500 H2 HOH B 1063 H2 HOH B 1066 0.90 REMARK 500 H1 HOH A 1141 H2 HOH A 1150 0.99 REMARK 500 H1 HOH B 1100 H2 HOH B 1133 1.03 REMARK 500 H SER A 47 H1 HOH A 1014 1.13 REMARK 500 HG SER A 47 H LYS A 49 1.16 REMARK 500 H41 DC B 108 H2 HOH B 1038 1.19 REMARK 500 HZ1 LYS A 5 H2 HOH A 1037 1.23 REMARK 500 H2 HOH C 1030 H1 HOH C 1126 1.23 REMARK 500 H ALA A 45 H1 HOH A 1039 1.26 REMARK 500 H2 HOH A 1041 H2 HOH A 1121 1.27 REMARK 500 H2 HOH C 1114 H1 HOH C 1123 1.30 REMARK 500 OP2 DG C 111 H2 HOH C 1132 1.37 REMARK 500 H1 HOH A 1141 O HOH A 1150 1.40 REMARK 500 OP2 DT C 113 H1 HOH C 1049 1.43 REMARK 500 O HOH A 1072 H1 HOH A 1073 1.43 REMARK 500 H1 HOH C 1030 O HOH C 1131 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 21 H1 HOH A 1115 3545 0.93 REMARK 500 H GLY A 39 H2 HOH A 1074 3545 0.96 REMARK 500 H2 HOH B 1020 H1 HOH A 1112 4456 1.29 REMARK 500 H1 HOH C 1104 H2 HOH A 1036 2565 1.30 REMARK 500 N GLY A 39 H2 HOH A 1074 3545 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 1 CG MET A 1 SD 0.763 REMARK 500 LYS A 63 N LYS A 63 CA -0.338 REMARK 500 LYS A 63 CA LYS A 63 CB 1.764 REMARK 500 LYS A 63 CB LYS A 63 CG 3.411 REMARK 500 LYS A 63 CG LYS A 63 CD 2.082 REMARK 500 LYS A 63 CD LYS A 63 CE 2.160 REMARK 500 LYS A 63 CE LYS A 63 NZ 2.301 REMARK 500 LYS A 63 CA LYS A 63 C 2.218 REMARK 500 LYS A 63 C LYS A 63 O 0.185 REMARK 500 LYS A 64 N LYS A 64 CA 2.988 REMARK 500 LYS A 64 CA LYS A 64 CB 2.698 REMARK 500 LYS A 64 CB LYS A 64 CG 1.785 REMARK 500 LYS A 64 CD LYS A 64 CE 6.624 REMARK 500 LYS A 64 CE LYS A 64 NZ 5.384 REMARK 500 LYS A 64 CA LYS A 64 C 1.774 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 102 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DT B 102 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT B 102 N3 - C4 - O4 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT B 102 C5 - C4 - O4 ANGL. DEV. = -5.3 DEGREES REMARK 500 DG B 103 O5' - C5' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DA B 104 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT C 110 N3 - C4 - O4 ANGL. DEV. = -6.0 DEGREES REMARK 500 DT C 110 C5 - C4 - O4 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG C 111 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA C 112 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC C 114 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DC C 114 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 114 N3 - C4 - N4 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC C 116 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DC C 116 C1' - O4' - C4' ANGL. DEV. = -9.5 DEGREES REMARK 500 MET A 1 CB - CA - C ANGL. DEV. = -18.8 DEGREES REMARK 500 MET A 1 N - CA - CB ANGL. DEV. = 44.4 DEGREES REMARK 500 MET A 1 CB - CG - SD ANGL. DEV. = 21.1 DEGREES REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 26.3 DEGREES REMARK 500 LYS A 63 C - N - CA ANGL. DEV. = 46.0 DEGREES REMARK 500 LYS A 63 N - CA - CB ANGL. DEV. = -17.2 DEGREES REMARK 500 LYS A 63 CA - CB - CG ANGL. DEV. = -71.8 DEGREES REMARK 500 LYS A 63 CB - CG - CD ANGL. DEV. = -43.4 DEGREES REMARK 500 LYS A 63 CG - CD - CE ANGL. DEV. = -35.1 DEGREES REMARK 500 LYS A 63 CD - CE - NZ ANGL. DEV. = -20.8 DEGREES REMARK 500 LYS A 63 N - CA - C ANGL. DEV. = -38.0 DEGREES REMARK 500 LYS A 63 CA - C - O ANGL. DEV. = -52.1 DEGREES REMARK 500 LYS A 63 CA - C - N ANGL. DEV. = -75.6 DEGREES REMARK 500 LYS A 63 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 LYS A 64 C - N - CA ANGL. DEV. = 115.1 DEGREES REMARK 500 LYS A 64 CB - CA - C ANGL. DEV. = -60.3 DEGREES REMARK 500 LYS A 64 N - CA - CB ANGL. DEV. = -45.5 DEGREES REMARK 500 LYS A 64 CA - CB - CG ANGL. DEV. = -27.1 DEGREES REMARK 500 LYS A 64 CG - CD - CE ANGL. DEV. = -81.9 DEGREES REMARK 500 LYS A 64 CD - CE - NZ ANGL. DEV. = -50.0 DEGREES REMARK 500 LYS A 64 N - CA - C ANGL. DEV. = -30.4 DEGREES REMARK 500 LYS A 64 CA - C - O ANGL. DEV. = -49.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 57.12 32.88 REMARK 500 GLU A 11 150.62 82.56 REMARK 500 LYS A 63 94.89 161.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG B 103 0.08 SIDE CHAIN REMARK 500 DC B 106 0.07 SIDE CHAIN REMARK 500 DC B 108 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1C8C A 1 64 UNP P39476 DN72_SULSO 1 64 DBREF 1C8C B 101 108 PDB 1C8C 1C8C 101 108 DBREF 1C8C C 109 116 PDB 1C8C 1C8C 109 116 SEQRES 1 B 8 DG DT DG DA DT DC DG DC SEQRES 1 C 8 DG DT DG DA DT DC DG DC SEQRES 1 A 64 MET ALA THR VAL LYS PHE LYS TYR LYS GLY GLU GLU LYS SEQRES 2 A 64 GLN VAL ASP ILE SER LYS ILE LYS LYS VAL TRP ARG VAL SEQRES 3 A 64 GLY LYS MET ILE SER PHE THR TYR ASP GLU GLY GLY GLY SEQRES 4 A 64 LYS THR GLY ARG GLY ALA VAL SER GLU LYS ASP ALA PRO SEQRES 5 A 64 LYS GLU LEU LEU GLN MET LEU ALA LYS GLN LYS LYS FORMUL 4 HOH *157(H2 O) HELIX 1 1 ILE A 17 LYS A 19 5 3 HELIX 2 2 GLY A 37 GLY A 39 5 3 HELIX 3 3 LYS A 53 ALA A 60 1 8 SHEET 1 A 2 THR A 3 LYS A 7 0 SHEET 2 A 2 GLU A 12 ASP A 16 -1 N VAL A 15 O VAL A 4 SHEET 1 B 3 THR A 41 SER A 47 0 SHEET 2 B 3 MET A 29 ASP A 35 -1 N TYR A 34 O GLY A 42 SHEET 3 B 3 ILE A 20 VAL A 26 -1 N VAL A 26 O MET A 29 CISPEP 1 GLN A 62 LYS A 63 0 -10.86 CRYST1 47.475 49.800 37.681 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021064 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026538 0.00000