HEADER MEMBRANE PROTEIN 05-OCT-99 1C8P TITLE NMR STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE COMMON BETA-CHAIN IN TITLE 2 THE GM-CSF, IL-3 AND IL-5 RECEPTORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOKINE RECEPTOR COMMON BETA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: HEMOPOIETIC CELLS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PEC611 KEYWDS BETA SANDWICH, CYTOKINE RECEPTOR, FN3 DOMAIN, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR T.D.MULHERN,R.J.D'ANDREA,C.GAUNT,L.VANDELEUR,M.A.VADAS,A.F.LOPEZ, AUTHOR 2 G.W.BOOKER,C.J.BAGLEY REVDAT 5 27-DEC-23 1C8P 1 REMARK REVDAT 4 16-FEB-22 1C8P 1 REMARK SEQADV REVDAT 3 24-FEB-09 1C8P 1 VERSN REVDAT 2 01-APR-03 1C8P 1 JRNL REVDAT 1 15-JUN-00 1C8P 0 SPRSDE 21-JUN-00 1C8P 1D4Q JRNL AUTH T.D.MULHERN,A.F.LOPEZ,R.J.D'ANDREA,C.GAUNT,L.VANDELEUR, JRNL AUTH 2 M.A.VADAS,G.W.BOOKER,C.J.BAGLEY JRNL TITL THE SOLUTION STRUCTURE OF THE CYTOKINE-BINDING DOMAIN OF THE JRNL TITL 2 COMMON BETA-CHAIN OF THE RECEPTORS FOR JRNL TITL 3 GRANULOCYTE-MACROPHAGE COLONY-STIMULATING FACTOR, JRNL TITL 4 INTERLEUKIN-3 AND INTERLEUKIN-5. JRNL REF J.MOL.BIOL. V. 297 989 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10736232 JRNL DOI 10.1006/JMBI.2000.3610 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.D.MULHERN,C.J.BAGLEY,C.GAUNT,A.F.LOPEZ,M.A.VADAS, REMARK 1 AUTH 2 R.J.D'ANDREA,G.W.BOOKER REMARK 1 TITL 1H AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR DOMAIN 4 OF THE REMARK 1 TITL 2 COMMON BETA-CHAIN OF THE IL-3, IL-5 AND GM-CSF RECEPTORS REMARK 1 REF J.BIOMOL.NMR V. 14 281 1999 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008360024435 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, X-PLOR 3.851 REMARK 3 AUTHORS : VARIAN AND ASSOCIATES (VNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON 1500 UNAMBIGUOUS NOE-DERIVED DISTANCE REMARK 3 RESTRAINTS, REMARK 3 1034 AMBIGUOUS NOE-DERIVED DISTANCE RESTRAINTS, 42 DIHEDRAL ANGLE REMARK 3 RESTRAINTS REMARK 3 AND 30 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. THE ARIA METHOD OF REMARK 3 NILGES ET REMARK 3 AL. (1997) WAS USED REMARK 4 REMARK 4 1C8P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000001474. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 0.06M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM D4BC U-15N; 10MM PHOSPHATE REMARK 210 BUFFER;90% H2O, 10% D2O; 0.4MM REMARK 210 D4BC U-15N; 10MM PHOSPHATE REMARK 210 BUFFER;100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS CALCULATED USING THE ARIA METHOD REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 67 HG1 THR A 100 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 2 -171.94 -67.41 REMARK 500 1 MET A 4 -176.02 62.55 REMARK 500 1 PRO A 7 -177.88 -63.94 REMARK 500 1 ASP A 16 -52.62 83.24 REMARK 500 1 MET A 25 20.57 -151.45 REMARK 500 1 MET A 27 -62.36 -129.59 REMARK 500 1 ARG A 28 32.90 36.96 REMARK 500 1 TYR A 29 -78.37 -83.21 REMARK 500 1 HIS A 31 63.40 -68.86 REMARK 500 1 HIS A 34 97.12 54.65 REMARK 500 1 ARG A 41 -158.61 -104.42 REMARK 500 1 ALA A 45 -158.83 -108.99 REMARK 500 1 SER A 50 178.26 -52.60 REMARK 500 1 SER A 60 163.82 168.17 REMARK 500 1 ALA A 62 73.47 -112.61 REMARK 500 1 LEU A 63 95.81 -37.42 REMARK 500 1 ARG A 79 -152.51 -99.50 REMARK 500 1 SER A 81 74.88 -67.24 REMARK 500 1 THR A 83 -59.97 73.18 REMARK 500 1 ASN A 86 -101.74 -57.17 REMARK 500 1 TRP A 92 121.10 63.89 REMARK 500 1 GLU A 101 -162.00 40.60 REMARK 500 2 PRO A 7 -170.58 -66.76 REMARK 500 2 ASP A 14 38.21 -158.72 REMARK 500 2 ASP A 16 -63.20 175.31 REMARK 500 2 MET A 27 25.57 48.22 REMARK 500 2 GLU A 30 -176.39 -61.96 REMARK 500 2 HIS A 34 111.05 65.81 REMARK 500 2 ARG A 41 -154.75 -95.42 REMARK 500 2 ASN A 57 65.42 174.01 REMARK 500 2 SER A 60 160.16 179.09 REMARK 500 2 LEU A 63 104.24 -51.02 REMARK 500 2 PRO A 64 -62.17 -92.57 REMARK 500 2 THR A 80 65.32 -104.25 REMARK 500 2 SER A 81 74.35 -63.70 REMARK 500 2 THR A 83 -73.43 59.94 REMARK 500 2 TYR A 85 -161.42 -60.40 REMARK 500 2 ASN A 86 -106.18 -101.93 REMARK 500 2 TRP A 89 150.59 65.48 REMARK 500 2 SER A 90 -73.57 -55.19 REMARK 500 2 GLU A 91 -76.31 170.67 REMARK 500 2 TRP A 92 125.21 178.11 REMARK 500 2 GLU A 101 150.73 68.57 REMARK 500 3 MET A 4 -164.26 60.88 REMARK 500 3 PRO A 7 -166.05 -53.07 REMARK 500 3 ASP A 16 -65.01 171.93 REMARK 500 3 MET A 25 40.89 178.77 REMARK 500 3 MET A 27 -52.56 -138.40 REMARK 500 3 TYR A 29 -74.18 -53.02 REMARK 500 3 GLU A 30 -64.72 -148.97 REMARK 500 REMARK 500 THIS ENTRY HAS 444 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4308 RELATED DB: BMRB REMARK 900 1H AND 15N CHEMICAL SHIFT DATA DBREF 1C8P A 1 102 UNP P32927 IL3RB_HUMAN 338 438 SEQADV 1C8P MET A 1 UNP P32927 CLONING ARTIFACT SEQRES 1 A 102 MET ILE GLN MET ALA PRO PRO SER LEU ASN VAL THR LYS SEQRES 2 A 102 ASP GLY ASP SER TYR SER LEU ARG TRP GLU THR MET LYS SEQRES 3 A 102 MET ARG TYR GLU HIS ILE ASP HIS THR PHE GLU ILE GLN SEQRES 4 A 102 TYR ARG LYS ASP THR ALA THR TRP LYS ASP SER LYS THR SEQRES 5 A 102 GLU THR LEU GLN ASN ALA HIS SER MET ALA LEU PRO ALA SEQRES 6 A 102 LEU GLU PRO SER THR ARG TYR TRP ALA ARG VAL ARG VAL SEQRES 7 A 102 ARG THR SER ARG THR GLY TYR ASN GLY ILE TRP SER GLU SEQRES 8 A 102 TRP SER GLU ALA ARG SER TRP ASP THR GLU SER HELIX 1 1 THR A 46 SER A 50 5 5 SHEET 1 A 3 SER A 8 ASP A 14 0 SHEET 2 A 3 SER A 17 GLU A 23 -1 O SER A 17 N ASP A 14 SHEET 3 A 3 SER A 60 LEU A 63 -1 O MET A 61 N LEU A 20 SHEET 1 B 4 THR A 52 GLN A 56 0 SHEET 2 B 4 THR A 35 LYS A 42 -1 N PHE A 36 O LEU A 55 SHEET 3 B 4 TYR A 72 ARG A 79 -1 O TRP A 73 N ARG A 41 SHEET 4 B 4 ARG A 96 TRP A 98 -1 O ARG A 96 N ALA A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1