HEADER HYDROLASE 02-AUG-99 1C9F TITLE NMR STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-ACTIVATED DNASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-87; COMPND 5 SYNONYM: DNASE INHIBITED BY DNA FRAGMENTATION FACTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA ROLL, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.YAMAZAKI,K.UEGAKI REVDAT 5 16-FEB-22 1C9F 1 REMARK REVDAT 4 24-FEB-09 1C9F 1 VERSN REVDAT 3 26-JUN-00 1C9F 3 SOURCE ATOM REVDAT 2 24-APR-00 1C9F 1 JRNL REVDAT 1 16-FEB-00 1C9F 0 JRNL AUTH K.UEGAKI,T.OTOMO,H.SAKAHIRA,M.SHIMIZU,N.YUMOTO,Y.KYOGOKU, JRNL AUTH 2 S.NAGATA,T.YAMAZAKI JRNL TITL STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE AND JRNL TITL 2 INTERACTION WITH THE CAD DOMAIN OF ITS INHIBITOR. JRNL REF J.MOL.BIOL. V. 297 1121 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10764577 JRNL DOI 10.1006/JMBI.2000.3643 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.841, X-PLOR 3.841 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C9F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009456. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.6 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : U-15N; U-13C;U-15N; U-13C;U-15N; REMARK 210 U-15N REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HMQC-J; 3D_13C-SEPARATED_NOESY; REMARK 210 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 VAL A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 28 H GLU A 31 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 -172.52 66.02 REMARK 500 1 ALA A 3 63.61 179.87 REMARK 500 1 ARG A 6 48.29 -87.47 REMARK 500 1 GLN A 7 113.57 172.73 REMARK 500 1 CYS A 20 -163.01 174.69 REMARK 500 1 VAL A 38 -71.83 -85.33 REMARK 500 1 GLN A 41 85.79 54.01 REMARK 500 1 ARG A 48 148.81 172.75 REMARK 500 1 ASP A 54 15.52 -151.00 REMARK 500 1 PRO A 64 -91.05 -72.13 REMARK 500 1 LEU A 66 152.76 -42.84 REMARK 500 1 HIS A 82 -71.30 -66.82 REMARK 500 1 TYR A 84 53.21 -114.20 REMARK 500 1 SER A 86 59.65 -114.17 REMARK 500 2 CYS A 2 -175.04 171.25 REMARK 500 2 ALA A 3 78.81 -157.90 REMARK 500 2 ARG A 6 46.51 -100.43 REMARK 500 2 GLN A 7 114.68 178.40 REMARK 500 2 SER A 18 -163.04 -123.97 REMARK 500 2 CYS A 20 -159.70 172.95 REMARK 500 2 GLN A 41 84.22 56.86 REMARK 500 2 ARG A 48 117.38 -179.25 REMARK 500 2 ASP A 54 22.39 -141.54 REMARK 500 2 PHE A 63 100.53 -41.17 REMARK 500 2 LEU A 66 161.39 -48.33 REMARK 500 2 PRO A 67 -167.31 -72.13 REMARK 500 2 ALA A 70 101.98 -45.46 REMARK 500 2 TYR A 84 62.94 -118.70 REMARK 500 2 SER A 86 56.65 -112.85 REMARK 500 3 CYS A 2 149.61 169.98 REMARK 500 3 ALA A 3 56.21 -146.37 REMARK 500 3 ARG A 6 40.37 -94.04 REMARK 500 3 GLN A 7 132.74 171.58 REMARK 500 3 LEU A 13 85.50 -65.29 REMARK 500 3 SER A 18 -162.36 -129.98 REMARK 500 3 CYS A 20 -160.63 -175.93 REMARK 500 3 ARG A 34 -70.26 -46.33 REMARK 500 3 GLN A 41 80.30 57.41 REMARK 500 3 ARG A 48 141.95 175.99 REMARK 500 3 ASP A 54 10.87 -145.90 REMARK 500 3 PHE A 63 101.64 -42.26 REMARK 500 3 LEU A 66 164.46 -44.86 REMARK 500 3 PRO A 67 -168.45 -69.53 REMARK 500 3 ALA A 70 106.09 -48.76 REMARK 500 4 LEU A 5 119.72 -162.40 REMARK 500 4 ARG A 6 41.44 -94.45 REMARK 500 4 GLN A 7 120.99 173.52 REMARK 500 4 CYS A 20 -161.55 -170.76 REMARK 500 4 ALA A 26 134.85 178.38 REMARK 500 4 GLN A 41 88.49 56.46 REMARK 500 REMARK 500 THIS ENTRY HAS 282 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 6 0.30 SIDE CHAIN REMARK 500 1 ARG A 14 0.11 SIDE CHAIN REMARK 500 1 ARG A 27 0.31 SIDE CHAIN REMARK 500 1 ARG A 34 0.30 SIDE CHAIN REMARK 500 1 ARG A 39 0.31 SIDE CHAIN REMARK 500 1 ARG A 48 0.32 SIDE CHAIN REMARK 500 2 ARG A 6 0.29 SIDE CHAIN REMARK 500 2 ARG A 14 0.20 SIDE CHAIN REMARK 500 2 ARG A 27 0.20 SIDE CHAIN REMARK 500 2 ARG A 34 0.29 SIDE CHAIN REMARK 500 2 ARG A 39 0.27 SIDE CHAIN REMARK 500 2 ARG A 48 0.27 SIDE CHAIN REMARK 500 3 ARG A 6 0.24 SIDE CHAIN REMARK 500 3 ARG A 14 0.30 SIDE CHAIN REMARK 500 3 ARG A 27 0.13 SIDE CHAIN REMARK 500 3 ARG A 34 0.30 SIDE CHAIN REMARK 500 3 ARG A 39 0.27 SIDE CHAIN REMARK 500 3 ARG A 48 0.32 SIDE CHAIN REMARK 500 4 ARG A 6 0.31 SIDE CHAIN REMARK 500 4 ARG A 14 0.32 SIDE CHAIN REMARK 500 4 ARG A 27 0.24 SIDE CHAIN REMARK 500 4 ARG A 34 0.17 SIDE CHAIN REMARK 500 4 ARG A 39 0.11 SIDE CHAIN REMARK 500 4 ARG A 48 0.14 SIDE CHAIN REMARK 500 5 ARG A 6 0.25 SIDE CHAIN REMARK 500 5 ARG A 14 0.24 SIDE CHAIN REMARK 500 5 ARG A 27 0.24 SIDE CHAIN REMARK 500 5 ARG A 34 0.27 SIDE CHAIN REMARK 500 5 ARG A 39 0.25 SIDE CHAIN REMARK 500 5 ARG A 48 0.32 SIDE CHAIN REMARK 500 6 ARG A 6 0.32 SIDE CHAIN REMARK 500 6 ARG A 14 0.29 SIDE CHAIN REMARK 500 6 ARG A 27 0.30 SIDE CHAIN REMARK 500 6 ARG A 34 0.32 SIDE CHAIN REMARK 500 6 ARG A 39 0.27 SIDE CHAIN REMARK 500 7 ARG A 6 0.11 SIDE CHAIN REMARK 500 7 ARG A 14 0.13 SIDE CHAIN REMARK 500 7 ARG A 27 0.32 SIDE CHAIN REMARK 500 7 ARG A 34 0.28 SIDE CHAIN REMARK 500 7 ARG A 39 0.18 SIDE CHAIN REMARK 500 7 ARG A 48 0.32 SIDE CHAIN REMARK 500 8 ARG A 6 0.23 SIDE CHAIN REMARK 500 8 ARG A 14 0.27 SIDE CHAIN REMARK 500 8 ARG A 27 0.24 SIDE CHAIN REMARK 500 8 ARG A 34 0.32 SIDE CHAIN REMARK 500 8 ARG A 39 0.30 SIDE CHAIN REMARK 500 8 ARG A 48 0.28 SIDE CHAIN REMARK 500 9 ARG A 6 0.26 SIDE CHAIN REMARK 500 9 ARG A 14 0.10 SIDE CHAIN REMARK 500 9 ARG A 27 0.25 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 112 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1C9F A 1 87 UNP O54788 DFFB_MOUSE 1 87 SEQADV 1C9F VAL A -2 UNP O54788 INSERTION SEQADV 1C9F PRO A -1 UNP O54788 INSERTION SEQADV 1C9F HIS A 0 UNP O54788 INSERTION SEQRES 1 A 90 VAL PRO HIS MET CYS ALA VAL LEU ARG GLN PRO LYS CYS SEQRES 2 A 90 VAL LYS LEU ARG ALA LEU HIS SER ALA CYS LYS PHE GLY SEQRES 3 A 90 VAL ALA ALA ARG SER CYS GLN GLU LEU LEU ARG LYS GLY SEQRES 4 A 90 CYS VAL ARG PHE GLN LEU PRO MET PRO GLY SER ARG LEU SEQRES 5 A 90 CYS LEU TYR GLU ASP GLY THR GLU VAL THR ASP ASP CYS SEQRES 6 A 90 PHE PRO GLY LEU PRO ASN ASP ALA GLU LEU LEU LEU LEU SEQRES 7 A 90 THR ALA GLY GLU THR TRP HIS GLY TYR VAL SER ASP HELIX 1 1 SER A 28 PHE A 40 1 13 SHEET 1 A 4 GLY A 23 ALA A 26 0 SHEET 2 A 4 LYS A 9 ALA A 15 -1 O LYS A 9 N ALA A 26 SHEET 3 A 4 ALA A 70 LEU A 75 1 N ALA A 70 O CYS A 10 SHEET 4 A 4 ARG A 48 LEU A 51 -1 N ARG A 48 O LEU A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1