HEADER TRANSFERASE 02-AUG-99 1C9K TITLE THE THREE DIMENSIONAL STRUCTURE OF ADENOSYLCOBINAMIDE KINASE/ TITLE 2 ADENOSYLCOBINAMIDE PHOSPHATE GUALYLYLTRANSFERASE (COBU) COMPLEXED TITLE 3 WITH GMP: EVIDENCE FOR A SUBSTRATE INDUCED TRANSFERASE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLCOBINAMIDE KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: COBU; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA STRUCTURE ROSSMANN FOLD P-LOOP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.B.THOMPSON,M.G.THOMAS,J.C.ESCLANTE-SEMERENA,I.RAYMENT REVDAT 7 07-FEB-24 1C9K 1 REMARK LINK REVDAT 6 31-JAN-18 1C9K 1 REMARK REVDAT 5 24-FEB-09 1C9K 1 VERSN REVDAT 4 01-APR-03 1C9K 1 JRNL REVDAT 3 27-DEC-00 1C9K 1 REMARK REVDAT 2 19-JAN-00 1C9K 1 JRNL REVDAT 1 18-AUG-99 1C9K 0 JRNL AUTH T.B.THOMPSON,M.G.THOMAS,J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL THREE-DIMENSIONAL STRUCTURE OF ADENOSYLCOBINAMIDE JRNL TITL 2 KINASE/ADENOSYLCOBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE JRNL TITL 3 (COBU) COMPLEXED WITH GMP: EVIDENCE FOR A SUBSTRATE-INDUCED JRNL TITL 4 TRANSFERASE ACTIVE SITE. JRNL REF BIOCHEMISTRY V. 38 12995 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10529169 JRNL DOI 10.1021/BI990910X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF ADENOSYLCOBINAMIDE REMARK 1 TITL 2 KINASE/ADENOSYLCOBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE FROM REMARK 1 TITL 3 SALMONELLA TYPHIMURIUM DETERMINED TO 2.3 A RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 37 7686 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 26435 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 27168 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 41.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.320 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT REFINEMENT SOFTWARE REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE FROM TNT REMARK 4 REMARK 4 1C9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 133 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26435 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 4000 100 MM CACL2 50 MM CHES, REMARK 280 PH 9.0, BATCH, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.82000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.82000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 37 REMARK 465 GLU A 38 REMARK 465 MET A 39 REMARK 465 ALA A 40 REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 465 GLU A 96 REMARK 465 ASN A 97 REMARK 465 ASP C 36 REMARK 465 ASP C 37 REMARK 465 GLU C 38 REMARK 465 MET C 39 REMARK 465 ALA C 40 REMARK 465 ALA C 41 REMARK 465 ARG C 42 REMARK 465 ILE C 43 REMARK 465 GLN C 44 REMARK 465 GLU C 58 REMARK 465 CYS C 59 REMARK 465 TRP C 60 REMARK 465 GLY C 95 REMARK 465 GLU C 96 REMARK 465 ASN C 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 HIS A 45 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 46 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 25 CG CD OE1 NE2 REMARK 470 LEU B 35 CG CD1 CD2 REMARK 470 ASP B 36 CG OD1 OD2 REMARK 470 ASP B 37 CG OD1 OD2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLN B 44 CG CD OE1 NE2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 46 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 74 CG OD1 OD2 REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 ARG C 14 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 25 CG CD OE1 NE2 REMARK 470 LEU C 35 CG CD1 CD2 REMARK 470 HIS C 45 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 46 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 55 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 62 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 74 CG OD1 OD2 REMARK 470 GLU C 100 CG CD OE1 OE2 REMARK 470 GLU C 143 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 58 N GLU B 58 CA -0.171 REMARK 500 ALA C 23 CA ALA C 23 C -0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 48 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP A 64 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 PRO A 73 C - N - CD ANGL. DEV. = -15.0 DEGREES REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 98 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 112 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 152 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 22 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 22 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 PRO B 51 C - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 ALA B 57 CA - C - N ANGL. DEV. = -18.0 DEGREES REMARK 500 ALA B 57 O - C - N ANGL. DEV. = 16.9 DEGREES REMARK 500 GLU B 58 C - N - CA ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP B 112 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 113 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 152 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP C 22 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP C 22 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ALA C 23 O - C - N ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG C 61 CA - C - N ANGL. DEV. = -19.8 DEGREES REMARK 500 ARG C 61 O - C - N ANGL. DEV. = 12.3 DEGREES REMARK 500 HIS C 62 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 HIS C 62 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP C 70 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 70 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP C 75 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP C 113 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP C 113 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 HIS C 149 CA - CB - CG ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP C 152 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG C 156 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP C 166 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP C 166 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 35.03 -88.50 REMARK 500 PRO A 51 164.64 -48.21 REMARK 500 PRO A 99 -12.89 -25.55 REMARK 500 GLN A 101 34.33 -83.46 REMARK 500 LEU B 35 32.58 -97.34 REMARK 500 TRP B 60 8.81 -156.07 REMARK 500 GLU B 96 35.01 -77.72 REMARK 500 GLN B 101 23.37 -74.79 REMARK 500 ASP B 103 73.44 -109.31 REMARK 500 ASP C 22 -80.74 -59.88 REMARK 500 ALA C 23 97.15 68.86 REMARK 500 PRO C 24 -67.44 -29.96 REMARK 500 ASP C 70 30.86 -95.54 REMARK 500 PRO C 99 8.12 -65.44 REMARK 500 ASP C 103 77.47 -101.07 REMARK 500 ALA C 165 161.50 -49.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 58 -10.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 5GP C 606 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 13 OG REMARK 620 2 GLU C 80 OE1 69.1 REMARK 620 3 POP C 608 O1 55.7 113.2 REMARK 620 4 POP C 608 O4 101.5 168.4 63.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP C 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP C 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CBU RELATED DB: PDB REMARK 900 THE APO STRUCTURE OF COBU DBREF 1C9K A 1 180 UNP Q05599 COBU_SALTY 2 181 DBREF 1C9K B 1 180 UNP Q05599 COBU_SALTY 2 181 DBREF 1C9K C 1 180 UNP Q05599 COBU_SALTY 2 181 SEQRES 1 A 180 MET ILE LEU VAL THR GLY GLY ALA ARG SER GLY LYS SER SEQRES 2 A 180 ARG HIS ALA GLU ALA LEU ILE GLY ASP ALA PRO GLN VAL SEQRES 3 A 180 LEU TYR ILE ALA THR SER GLN ILE LEU ASP ASP GLU MET SEQRES 4 A 180 ALA ALA ARG ILE GLN HIS HIS LYS ASP GLY ARG PRO ALA SEQRES 5 A 180 HIS TRP ARG THR ALA GLU CYS TRP ARG HIS LEU ASP THR SEQRES 6 A 180 LEU ILE THR ALA ASP LEU ALA PRO ASP ASP ALA ILE LEU SEQRES 7 A 180 LEU GLU CYS ILE THR THR MET VAL THR ASN LEU LEU PHE SEQRES 8 A 180 ALA LEU GLY GLY GLU ASN ASP PRO GLU GLN TRP ASP TYR SEQRES 9 A 180 ALA ALA MET GLU ARG ALA ILE ASP ASP GLU ILE GLN ILE SEQRES 10 A 180 LEU ILE ALA ALA CYS GLN ARG CYS PRO ALA LYS VAL VAL SEQRES 11 A 180 LEU VAL THR ASN GLU VAL GLY MET GLY ILE VAL PRO GLU SEQRES 12 A 180 ASN ARG LEU ALA ARG HIS PHE ARG ASP ILE ALA GLY ARG SEQRES 13 A 180 VAL ASN GLN ARG LEU ALA ALA ALA ALA ASP GLU VAL TRP SEQRES 14 A 180 LEU VAL VAL SER GLY ILE GLY VAL LYS ILE LYS SEQRES 1 B 180 MET ILE LEU VAL THR GLY GLY ALA ARG SER GLY LYS SER SEQRES 2 B 180 ARG HIS ALA GLU ALA LEU ILE GLY ASP ALA PRO GLN VAL SEQRES 3 B 180 LEU TYR ILE ALA THR SER GLN ILE LEU ASP ASP GLU MET SEQRES 4 B 180 ALA ALA ARG ILE GLN HIS HIS LYS ASP GLY ARG PRO ALA SEQRES 5 B 180 HIS TRP ARG THR ALA GLU CYS TRP ARG HIS LEU ASP THR SEQRES 6 B 180 LEU ILE THR ALA ASP LEU ALA PRO ASP ASP ALA ILE LEU SEQRES 7 B 180 LEU GLU CYS ILE THR THR MET VAL THR ASN LEU LEU PHE SEQRES 8 B 180 ALA LEU GLY GLY GLU ASN ASP PRO GLU GLN TRP ASP TYR SEQRES 9 B 180 ALA ALA MET GLU ARG ALA ILE ASP ASP GLU ILE GLN ILE SEQRES 10 B 180 LEU ILE ALA ALA CYS GLN ARG CYS PRO ALA LYS VAL VAL SEQRES 11 B 180 LEU VAL THR ASN GLU VAL GLY MET GLY ILE VAL PRO GLU SEQRES 12 B 180 ASN ARG LEU ALA ARG HIS PHE ARG ASP ILE ALA GLY ARG SEQRES 13 B 180 VAL ASN GLN ARG LEU ALA ALA ALA ALA ASP GLU VAL TRP SEQRES 14 B 180 LEU VAL VAL SER GLY ILE GLY VAL LYS ILE LYS SEQRES 1 C 180 MET ILE LEU VAL THR GLY GLY ALA ARG SER GLY LYS SER SEQRES 2 C 180 ARG HIS ALA GLU ALA LEU ILE GLY ASP ALA PRO GLN VAL SEQRES 3 C 180 LEU TYR ILE ALA THR SER GLN ILE LEU ASP ASP GLU MET SEQRES 4 C 180 ALA ALA ARG ILE GLN HIS HIS LYS ASP GLY ARG PRO ALA SEQRES 5 C 180 HIS TRP ARG THR ALA GLU CYS TRP ARG HIS LEU ASP THR SEQRES 6 C 180 LEU ILE THR ALA ASP LEU ALA PRO ASP ASP ALA ILE LEU SEQRES 7 C 180 LEU GLU CYS ILE THR THR MET VAL THR ASN LEU LEU PHE SEQRES 8 C 180 ALA LEU GLY GLY GLU ASN ASP PRO GLU GLN TRP ASP TYR SEQRES 9 C 180 ALA ALA MET GLU ARG ALA ILE ASP ASP GLU ILE GLN ILE SEQRES 10 C 180 LEU ILE ALA ALA CYS GLN ARG CYS PRO ALA LYS VAL VAL SEQRES 11 C 180 LEU VAL THR ASN GLU VAL GLY MET GLY ILE VAL PRO GLU SEQRES 12 C 180 ASN ARG LEU ALA ARG HIS PHE ARG ASP ILE ALA GLY ARG SEQRES 13 C 180 VAL ASN GLN ARG LEU ALA ALA ALA ALA ASP GLU VAL TRP SEQRES 14 C 180 LEU VAL VAL SER GLY ILE GLY VAL LYS ILE LYS HET PO4 A 600 5 HET 5GP A 604 24 HET PO4 B 601 5 HET 5GP B 605 24 HET MG C 607 1 HET POP C 608 9 HET 5GP C 606 20 HETNAM PO4 PHOSPHATE ION HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM POP PYROPHOSPHATE 2- FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 5GP 3(C10 H14 N5 O8 P) FORMUL 8 MG MG 2+ FORMUL 9 POP H2 O7 P2 2- FORMUL 11 HOH *336(H2 O) HELIX 1 1 GLY A 11 GLY A 21 1 11 HELIX 2 2 ALA A 41 GLY A 49 1 9 HELIX 3 3 HIS A 62 LEU A 66 5 5 HELIX 4 4 CYS A 81 LEU A 93 1 13 HELIX 5 5 ASP A 103 CYS A 125 1 23 HELIX 6 6 ASN A 144 ALA A 165 1 22 HELIX 7 7 GLY B 11 GLY B 21 1 11 HELIX 8 8 ASP B 36 ARG B 50 1 15 HELIX 9 9 HIS B 62 LEU B 66 5 5 HELIX 10 10 CYS B 81 GLY B 95 1 15 HELIX 11 11 ASP B 98 TRP B 102 5 5 HELIX 12 12 ASP B 103 CYS B 125 1 23 HELIX 13 13 ASN B 144 ALA B 165 1 22 HELIX 14 14 GLY C 11 GLY C 21 1 11 HELIX 15 15 HIS C 45 ARG C 50 1 6 HELIX 16 16 HIS C 62 LEU C 66 5 5 HELIX 17 17 CYS C 81 GLY C 94 1 14 HELIX 18 18 ASP C 103 CYS C 125 1 23 HELIX 19 19 ASN C 144 ALA C 165 1 22 SHEET 1 A 7 TRP A 54 ALA A 57 0 SHEET 2 A 7 VAL A 26 ALA A 30 1 O VAL A 26 N ARG A 55 SHEET 3 A 7 ALA A 76 GLU A 80 1 O ALA A 76 N LEU A 27 SHEET 4 A 7 LYS A 128 VAL A 132 1 O LYS A 128 N ILE A 77 SHEET 5 A 7 ILE A 2 GLY A 6 1 O ILE A 2 N LEU A 131 SHEET 6 A 7 GLU A 167 VAL A 172 1 O GLU A 167 N LEU A 3 SHEET 7 A 7 ILE A 175 LYS A 178 -1 O ILE A 175 N VAL A 172 SHEET 1 B 7 TRP B 54 ALA B 57 0 SHEET 2 B 7 VAL B 26 ALA B 30 1 O VAL B 26 N ARG B 55 SHEET 3 B 7 ALA B 76 GLU B 80 1 O ALA B 76 N LEU B 27 SHEET 4 B 7 LYS B 128 ASN B 134 1 O LYS B 128 N ILE B 77 SHEET 5 B 7 ILE B 2 GLY B 6 1 O ILE B 2 N LEU B 131 SHEET 6 B 7 GLU B 167 VAL B 172 1 O GLU B 167 N LEU B 3 SHEET 7 B 7 ILE B 175 LYS B 178 -1 O ILE B 175 N VAL B 172 SHEET 1 C 7 ARG C 55 ALA C 57 0 SHEET 2 C 7 VAL C 26 ALA C 30 1 O VAL C 26 N ARG C 55 SHEET 3 C 7 ALA C 76 GLU C 80 1 O ALA C 76 N LEU C 27 SHEET 4 C 7 LYS C 128 VAL C 132 1 O LYS C 128 N ILE C 77 SHEET 5 C 7 ILE C 2 GLY C 6 1 O ILE C 2 N LEU C 131 SHEET 6 C 7 GLU C 167 VAL C 172 1 O GLU C 167 N LEU C 3 SHEET 7 C 7 ILE C 175 LYS C 178 -1 N ILE C 175 O VAL C 172 LINK OG SER C 13 MG MG C 607 1555 1555 1.99 LINK OE1 GLU C 80 MG MG C 607 1555 1555 3.13 LINK MG MG C 607 O1 POP C 608 1555 1555 2.89 LINK MG MG C 607 O4 POP C 608 1555 1555 2.32 CISPEP 1 GLU A 80 CYS A 81 0 0.21 CISPEP 2 GLU B 80 CYS B 81 0 -0.39 CISPEP 3 GLU C 80 CYS C 81 0 -0.20 SITE 1 AC1 7 GLY A 7 ARG A 9 SER A 10 GLY A 11 SITE 2 AC1 7 LYS A 12 SER A 13 HOH A 851 SITE 1 AC2 8 GLY B 7 ARG B 9 SER B 10 GLY B 11 SITE 2 AC2 8 LYS B 12 SER B 13 HOH B 725 HOH B 749 SITE 1 AC3 3 SER C 13 GLU C 80 POP C 608 SITE 1 AC4 12 TYR A 28 ALA A 30 THR A 31 SER A 32 SITE 2 AC4 12 ILE A 34 ILE A 43 HIS A 46 LYS A 47 SITE 3 AC4 12 ARG A 50 GLU A 58 GLU A 80 CYS A 81 SITE 1 AC5 12 SER B 13 TYR B 28 ALA B 30 THR B 31 SITE 2 AC5 12 SER B 32 ILE B 43 HIS B 46 LYS B 47 SITE 3 AC5 12 ARG B 50 GLU B 58 GLU B 80 CYS B 81 SITE 1 AC6 10 GLY C 7 ALA C 8 ARG C 9 SER C 10 SITE 2 AC6 10 GLY C 11 LYS C 12 SER C 13 MG C 607 SITE 3 AC6 10 HOH C 739 HOH C 898 SITE 1 AC7 10 TYR C 28 ALA C 30 THR C 31 SER C 32 SITE 2 AC7 10 ILE C 34 LYS C 47 ARG C 50 GLU C 80 SITE 3 AC7 10 CYS C 81 THR C 84 CRYST1 58.380 87.770 101.640 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009839 0.00000