HEADER OXIDOREDUCTASE (H2O2 ACCEPTOR) 24-FEB-95 1CAF OBSLTE 11-JAN-97 1CAF 2CAH TITLE CRYSTAL STRUCTURE OF PROTEUS MIRABILIS PR CATALASE WITH AND TITLE 2 WITHOUT BOUND NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS OXIDOREDUCTASE (H2O2 ACCEPTOR) EXPDTA X-RAY DIFFRACTION AUTHOR P.GOUET,H.-M.JOUVE,O.DIDEBERG REVDAT 1 10-JUL-95 1CAF 0 JRNL AUTH P.GOUET,H.-M.JOUVE,O.DIDEBERG JRNL TITL CRYSTAL STRUCTURE OF PROTEUS MIRABILIS PR CATALASE JRNL TITL 2 WITH AND WITHOUT BOUND NADPH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.-M.JOUVE,P.GOUET,N.BOUDJADA,G.BUISSON,R.KAHN, REMARK 1 AUTH 2 E.DUEE REMARK 1 TITL CRYSTALLIZATION AND CRYSTAL PACKING OF PROTEUS REMARK 1 TITL 2 MIRABILIS REMARK 1 REF J.MOL.BIOL. V. 221 1075 1991 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.FITA,A.M.SILVA,M.R.N.MURTHY,M.G.ROSSMANN REMARK 1 TITL THE REFINED STRUCTURE OF BEEF LIVER CATALASE AT REMARK 1 TITL 2 2.5 ANGSTROMS RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 42 497 1986 REMARK 1 REFN ASTM ASBSDK DK ISSN 0108-7681 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 1CAF REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CAF COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1CAF THE SUBMITTED MONOMER HAS THE SAME ORIENTATION AS THE REMARK 5 1CAF STRUCTURE OF BEEF LIVER CATALASE (PROTEIN DATA BANK REMARK 5 ENTRY 1CAF 7CAT). APPLICATION OF THE SCALE MATRIX GIVEN REMARK 5 BELOW 1CAF POSITIONS THE SUBMITTED MONOMER IN THE CRYSTAL REMARK 5 WITH ITS 1CAF MOLECULAR P AXIS PARALLEL TO THE REMARK 5 CRYSTALLOGRAPHIC C AXIS 1CAF AND ITS MOLECULAR Q AXIS ALONG REMARK 5 THE CRYSTALLOGRAPHIC A AXIS. 1CAF REMARK 6 REMARK 6 1CAF COORDINATES FOR RESIDUES 1 - 3 AND 479 - 484 ARE NOT REMARK 6 1CAF INCLUDED. SIDE CHAINS OF RESIDUES 204, 395, 451 ARE REMARK 6 CUT 1CAF BEYOND THEIR CARBON CB. SIDE CHAINS OF RESIDUES REMARK 6 72, 450, 1CAF 473 ARE CUT BEYOND THEIR CARBON CG. 1CAF REMARK 7 REMARK 7 1CAF RESIDUE 53 IS A METHIONINE SULFONE ACCORDING TO THE REMARK 7 1CAF SEQUENCE DETERMINATION. THE TWO OXYGEN ATOMS THAT REMARK 7 COMPLETE 1CAF THE SULFONE GROUP IS PRESENTED IN THIS ENTRY REMARK 7 AS THE HET 1CAF GROUP MEO 1CAF REMARK 8 REMARK 8 1CAF WATER 0 WAS FOUND IN SPECIAL POSITION ALONG THE REMARK 8 MOLECULAR P 1CAF WHICH IS COINCIDENT WITH A REMARK 8 CRYSTALLOGRAPHIC TWO-FOLD AXIS. 1CAF REMARK 9 REMARK 9 1CAF THE PROXIMAL TYROSINE 337 SEEMS TO BE DEPROTONATED. REMARK 9 1CAF REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,2/3+Z REMARK 290 3555 -X+Y,-X,1/3+Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,2/3+Z REMARK 290 6555 X-Y,X,1/3+Z REMARK 290 7555 Y,X,2/3-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,1/3-Z REMARK 290 10555 -Y,-X,2/3-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,1/3-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 166.09333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.04667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 166.09333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.04667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 166.09333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 83.04667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 166.09333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 83.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH 600 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 1 REMARK 465 GLU 2 REMARK 465 LYS 3 REMARK 465 GLU 479 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS 72 CD CE NZ REMARK 470 GLU 81 CG CD OE1 OE2 REMARK 470 LYS 204 CG CD CE NZ REMARK 470 ASP 395 CG OD1 OD2 REMARK 470 LYS 450 CD CE NZ REMARK 470 GLU 451 CG CD OE1 OE2 REMARK 470 LYS 473 CD CE NZ REMARK 470 LYS 476 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 SD MET 53 OD1 MEO 53 1.45 REMARK 500 SD MET 53 OD2 MEO 53 1.45 REMARK 500 OH TYR 337 FE HEM 1 1.71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP 252 OE1 GLN 435 12555 0.80 REMARK 500 CE1 PHE 190 CB ASP 432 12555 0.87 REMARK 500 OD2 ASP 227 CG LEU 232 12555 0.89 REMARK 500 CD LYS 222 NH2 ARG 436 12555 0.94 REMARK 500 CA GLU 228 C GLU 228 12555 0.94 REMARK 500 CE LYS 222 NH2 ARG 436 12555 0.96 REMARK 500 CA LEU 224 OE1 GLU 228 12555 1.02 REMARK 500 OD2 ASP 227 CB LEU 232 12555 1.05 REMARK 500 CB GLN 435 O HOH 676 12555 1.17 REMARK 500 C LEU 224 OE2 GLU 228 12555 1.27 REMARK 500 CA GLN 435 O HOH 676 12555 1.29 REMARK 500 CB GLU 228 CB GLU 228 12555 1.31 REMARK 500 CE1 PHE 190 CG ASP 432 12555 1.32 REMARK 500 N GLN 435 O HOH 676 12555 1.36 REMARK 500 N MET 225 OE2 GLU 228 12555 1.46 REMARK 500 C GLU 228 C GLU 228 12555 1.46 REMARK 500 CG ASP 227 CB LEU 232 12555 1.47 REMARK 500 NH2 ARG 250 CG GLN 435 12555 1.47 REMARK 500 C LEU 224 CD GLU 228 12555 1.48 REMARK 500 O LEU 224 OE2 GLU 228 12555 1.49 REMARK 500 O MET 225 OE2 GLU 228 12555 1.52 REMARK 500 C LEU 224 OE1 GLU 228 12555 1.53 REMARK 500 CZ PHE 190 CB ASP 432 12555 1.54 REMARK 500 CB LEU 224 OE1 GLU 228 12555 1.55 REMARK 500 CA GLU 228 O GLU 228 12555 1.55 REMARK 500 OD2 ASP 227 CD2 LEU 232 12555 1.56 REMARK 500 N MET 225 CD GLU 228 12555 1.58 REMARK 500 CA GLU 228 CA GLU 228 12555 1.61 REMARK 500 NZ LYS 222 NH2 ARG 436 12555 1.63 REMARK 500 O ASN 223 CE MET 225 12555 1.66 REMARK 500 NE ARG 250 NE2 GLN 435 12555 1.73 REMARK 500 CE1 PHE 190 OD2 ASP 432 12555 1.74 REMARK 500 NZ LYS 222 CZ ARG 436 12555 1.76 REMARK 500 C MET 225 OE2 GLU 228 12555 1.76 REMARK 500 NZ LYS 222 NE ARG 436 12555 1.79 REMARK 500 O MET 225 CG GLU 228 12555 1.81 REMARK 500 CA MET 225 OE2 GLU 228 12555 1.82 REMARK 500 N GLU 228 O GLU 228 12555 1.82 REMARK 500 O MET 225 CD GLU 228 12555 1.84 REMARK 500 C GLU 228 O GLU 228 12555 1.85 REMARK 500 OD2 ASP 252 CD GLN 435 12555 1.85 REMARK 500 CD1 PHE 190 OD2 ASP 432 12555 1.86 REMARK 500 OD2 ASP 227 CD1 LEU 232 12555 1.88 REMARK 500 CE2 PHE 190 NH1 ARG 436 12555 1.91 REMARK 500 N MET 225 OE1 GLU 228 12555 1.91 REMARK 500 CE LYS 222 CZ ARG 436 12555 1.93 REMARK 500 NH2 ARG 250 CD GLN 435 12555 1.95 REMARK 500 CB ASP 227 CB LEU 232 12555 1.96 REMARK 500 CA LEU 224 CD GLU 228 12555 1.98 REMARK 500 CB LEU 224 CD GLU 228 12555 2.01 REMARK 500 CG ASP 252 OE1 GLN 435 12555 2.02 REMARK 500 CZ PHE 190 CG ASP 432 12555 2.03 REMARK 500 CG ASP 227 CG LEU 232 12555 2.03 REMARK 500 CA GLU 228 CB GLU 228 12555 2.06 REMARK 500 CD LYS 222 CZ ARG 436 12555 2.09 REMARK 500 CB ASP 227 CA LEU 232 12555 2.10 REMARK 500 N GLU 228 C GLU 228 12555 2.13 REMARK 500 O GLU 228 O GLU 228 12555 2.14 REMARK 500 OD2 ASP 181 CE LYS 222 12555 2.15 REMARK 500 CD1 PHE 190 CG ASP 432 12555 2.16 REMARK 500 C GLU 228 CB GLU 228 12555 2.16 REMARK 500 CZ PHE 190 OD2 ASP 432 12555 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET 53 SD MET 53 CE -0.185 REMARK 500 TRP 210 CG TRP 210 CD2 -0.124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL 389 CA - C - N ANGL. DEV. = 24.7 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER 196 -63.25 75.69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS 359 PRO 360 139.87 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 639 DISTANCE = 5.78 ANGSTROMS REMARK 999 REMARK 999 1CAF REFERENCE: 1CAF COMPLETE AMINO ACID SEQUENCE OF REMARK 999 PROTEUS MIRABILIS PR 1CAF A.BUZY ET AL., J.PROT.CHEMISTRY REMARK 999 V14, 59, 1995. 1CAF SEQRES 1 479 MET GLU LYS LYS LYS LEU THR THR ALA ALA GLY ALA PRO SEQRES 2 479 VAL VAL ASP ASN ASN ASN VAL ILE THR ALA GLY PRO ARG SEQRES 3 479 GLY PRO MET LEU LEU GLN ASP VAL TRP PHE LEU GLU LYS SEQRES 4 479 LEU ALA HIS PHE ASP ARG GLU VAL ILE PRO GLU ARG ARG SEQRES 5 479 MET HIS ALA LYS GLY SER GLY ALA PHE GLY THR PHE THR SEQRES 6 479 VAL THR HIS ASP ILE THR LYS TYR THR ARG ALA LYS ILE SEQRES 7 479 PHE SER GLU VAL GLY LYS LYS THR GLU MET PHE ALA ARG SEQRES 8 479 PHE SER THR VAL ALA GLY GLU ARG GLY ALA ALA ASP ALA SEQRES 9 479 GLU ARG ASP ILE ARG GLY PHE ALA LEU LYS PHE TYR THR SEQRES 10 479 GLU GLU GLY ASN TRP ASP MET VAL GLY ASN ASN THR PRO SEQRES 11 479 VAL PHE TYR LEU ARG ASP PRO LEU LYS PHE PRO ASP LEU SEQRES 12 479 ASN HIS ILE VAL LYS ARG ASP PRO ARG THR ASN MET ARG SEQRES 13 479 ASN MET ALA TYR LYS TRP ASP PHE PHE SER HIS LEU PRO SEQRES 14 479 GLU SER LEU HIS GLN LEU THR ILE ASP MET SER ASP ARG SEQRES 15 479 GLY LEU PRO LEU SER TYR ARG PHE VAL HIS GLY PHE GLY SEQRES 16 479 SER HIS THR TYR SER PHE ILE ASN LYS ASP ASN GLU ARG SEQRES 17 479 PHE TRP VAL LYS PHE HIS PHE ARG CYS GLN GLN GLY ILE SEQRES 18 479 LYS ASN LEU MET ASP ASP GLU ALA GLU ALA LEU VAL GLY SEQRES 19 479 LYS ASP ARG GLU SER SER GLN ARG ASP LEU PHE GLU ALA SEQRES 20 479 ILE GLU ARG GLY ASP TYR PRO ARG TRP LYS LEU GLN ILE SEQRES 21 479 GLN ILE MET PRO GLU LYS GLU ALA SER THR VAL PRO TYR SEQRES 22 479 ASN PRO PHE ASP LEU THR LYS VAL TRP PRO HIS ALA ASP SEQRES 23 479 TYR PRO LEU MET ASP VAL GLY TYR PHE GLU LEU ASN ARG SEQRES 24 479 ASN PRO ASP ASN TYR PHE SER ASP VAL GLU GLN ALA ALA SEQRES 25 479 PHE SER PRO ALA ASN ILE VAL PRO GLY ILE SER PHE SER SEQRES 26 479 PRO ASP LYS MET LEU GLN GLY ARG LEU PHE SER TYR GLY SEQRES 27 479 ASP ALA HIS ARG TYR ARG LEU GLY VAL ASN HIS HIS GLN SEQRES 28 479 ILE PRO VAL ASN ALA PRO LYS CYS PRO PHE HIS ASN TYR SEQRES 29 479 HIS ARG ASP GLY ALA MET ARG VAL ASP GLY ASN SER GLY SEQRES 30 479 ASN GLY ILE THR TYR GLU PRO ASN SER GLY GLY VAL PHE SEQRES 31 479 GLN GLU GLN PRO ASP PHE LYS GLU PRO PRO LEU SER ILE SEQRES 32 479 GLU GLY ALA ALA ASP HIS TRP ASN HIS ARG GLU ASP GLU SEQRES 33 479 ASP TYR PHE SER GLN PRO ARG ALA LEU TYR GLU LEU LEU SEQRES 34 479 SER ASP ASP GLU HIS GLN ARG MET PHE ALA ARG ILE ALA SEQRES 35 479 GLY GLU LEU SER GLN ALA SER LYS GLU THR GLN GLN ARG SEQRES 36 479 GLN ILE ASP LEU PHE THR LYS VAL HIS PRO GLU TYR GLY SEQRES 37 479 ALA GLY VAL GLU LYS ALA ILE LYS VAL LEU GLU FTNOTE 1 CYS 359 - PRO 360 OMEGA = 139.87 PEPTIDE BOND DEVIATES FTNOTE 1 SIGNIFICANTLY FROM TRANS CONFORMATION FTNOTE 2 CIS PROLINE - PRO 384 HET MEO 53 2 HET HEM 1 43 HET NDP 2 48 HETNAM MEO OXYGENS BOUND TO MET SD HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETSYN HEM HEME FORMUL 2 MEO O2 FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 NDP C21 H30 N7 O17 P3 FORMUL 5 HOH *39(H2 O1) HELIX 1 H2 VAL 34 PHE 43 1 10 HELIX 2 H3 LYS 139 VAL 147 1 9 HELIX 3 H4 MET 158 SER 166 1 9 HELIX 4 H5 LEU 172 MET 179 1 8 HELIX 5 H6 ASP 226 LYS 235 1 10 HELIX 6 H7 SER 239 ARG 250 1 12 HELIX 7 H8 TYR 304 GLU 309 1 6 HELIX 8 H9 LYS 328 ARG 344 1 17 HELIX 9 10 SER 420 TYR 426 1 7 HELIX 10 11 ASP 432 LEU 445 1 14 HELIX 11 12 LYS 450 LYS 462 1 13 HELIX 12 13 PRO 465 LEU 478 1 14 SHEET 1 S1 9 GLY 57 VAL 66 0 SHEET 2 S1 9 LYS 85 SER 93 -1 N MET 88 O GLY 62 SHEET 3 S1 9 GLY 110 THR 117 -1 N ALA 112 O ARG 91 SHEET 4 S1 9 GLY 120 ASN 127 -1 N MET 124 O LEU 113 SHEET 5 S1 9 GLY 193 ILE 202 -1 N PHE 194 O ASN 127 SHEET 6 S1 9 ARG 208 CYS 217 -1 N PHE 209 O PHE 201 SHEET 7 S1 9 ARG 255 PRO 264 -1 N GLN 259 O HIS 214 SHEET 8 S1 9 LEU 289 ARG 299 -1 N PHE 295 O TRP 256 SHEET 9 S1 9 GLY 57 VAL 66 -1 N THR 65 O TYR 294 CISPEP 1 GLU 383 PRO 384 0 7.93 CRYST1 112.360 112.360 249.140 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008900 0.005138 0.000000 0.00000 SCALE2 0.000000 0.010277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004014 0.00000