HEADER BACTERIAL ENCAPSULATION 23-MAY-78 1CAP TITLE CONFORMATION AND MOLECULAR ORGANIZATION IN FIBERS OF THE CAPSULAR TITLE 2 POLYSACCHARIDE FROM ESCHERICHIA COLI M41 MUTANT CAVEAT 1CAP GAL A 5 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-D-MANNOPYRANOSE-(1-3)-BETA-D-GLUCOPYRANOSE-(1-3)-[4, COMPND 3 6-O-[(1S)-1-CARBOXYETHYLIDENE]-BETA-D-GLUCOPYRANOSE-(1-2)-ALPHA-D- COMPND 4 MANNOPYRANOSE-(1-4)]BETA-D-GLUCOPYRANURONIC ACID-(1-3)-BETA-D- COMPND 5 GALACTOPYRANOSE-(1-2)-ALPHA-D-MANNOPYRANOSE-(1-3)-BETA-D- COMPND 6 GLUCOPYRANOSE-(1-3)-[4,6-O-[(1S)-1-CARBOXYETHYLIDENE]-BETA-D- COMPND 7 GLUCOPYRANOSE-(1-2)-ALPHA-D-MANNOPYRANOSE-(1-4)]BETA-D- COMPND 8 GLUCOPYRANURONIC ACID-(1-3)-BETA-D-GALACTOPYRANOSE; COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS BACTERIAL ENCAPSULATION EXPDTA FIBER DIFFRACTION AUTHOR S.ARNOTT REVDAT 9 07-FEB-24 1CAP 1 HETSYN REVDAT 8 29-JUL-20 1CAP 1 CAVEAT COMPND REMARK DBREF REVDAT 8 2 1 HETNAM LINK SITE ATOM REVDAT 7 13-JUL-11 1CAP 1 VERSN REVDAT 6 23-JUN-10 1CAP 1 HETNAM REVDAT 5 25-AUG-09 1CAP 1 SOURCE REVDAT 4 24-FEB-09 1CAP 1 VERSN REVDAT 3 30-SEP-83 1CAP 1 REVDAT REVDAT 2 01-OCT-80 1CAP 1 REMARK REVDAT 1 28-MAR-80 1CAP 0 JRNL AUTH R.MOORHOUSE,W.T.WINTER,S.ARNOTT,M.E.BAYER JRNL TITL CONFORMATION AND MOLECULAR ORGANIZATION IN FIBERS OF THE JRNL TITL 2 CAPSULAR POLYSACCHARIDE FROM ESCHERICHIA COLI M41 MUTANT. JRNL REF J.MOL.BIOL. V. 109 373 1977 JRNL REFN ISSN 0022-2836 JRNL PMID 319241 JRNL DOI 10.1016/S0022-2836(77)80018-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.C.SMITH,S.ARNOTT REMARK 1 TITL LALS, A LINKED-ATOM LEAST-SQUARES RECIPROCAL-SPACE REMARK 1 TITL 2 REFINEMENT SYSTEM INCORPORATING STEREOCHEMICAL RESTRAINTS TO REMARK 1 TITL 3 SUPPLEMENT SPARSE DIFFRACTION DATA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 34 3 1978 REMARK 1 REFN ISSN 0108-7673 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : LINKED-ATOM LEAST-SQUARES MODEL-BUILDING PROCEDURE REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE SPACE GROUP USED IN THE ANALYSIS OF THIS STRUCTURE IS REMARK 3 P 21 21 21 IN A NON-STANDARD SETTING. THE EQUIPOINTS FOR REMARK 3 THIS GROUP IN THE SETTING USED ARE- REMARK 3 X,Y,Z REMARK 3 -X,-Y,1/2+Z REMARK 3 -X,1/2+Y,1/2-Z REMARK 3 1/2+X,1/2-Y,-Z REMARK 4 REMARK 4 1CAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : FIBER DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 205 REMARK 205 FIBER DIFFRACTION REMARK 205 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM FIBER REMARK 205 DIFFRACTION DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 205 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE REMARK 205 VALUES ON THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: A 21 SCREW AXIS PARALLEL TO Z PASSES THROUGH X=0,Y=0 AND REMARK 300 THE 21 AXIS PARALLEL TO X IS IN THE Z=0 PLANE. THE SCREW REMARK 300 AXIS PARALLEL TO Z WAS USED TO GENERATE THE TWELVE-RESIDUE REMARK 300 SEGMENT FROM THE PUBLISHED COORDINATES FOR THE SIX-RESIDUE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GAL A 1 HET GAL A 1 18 HET BDP A 2 17 HET BGC A 3 18 HET MAN A 4 18 HET GAL A 5 18 HET BDP A 6 17 HET BGC A 7 18 HET MAN A 8 18 HET MAN A 9 18 HET CEG A 10 26 HET MAN A 11 18 HET CEG A 12 26 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CEG 4,6-O-[(1S)-1-CARBOXYETHYLIDENE]-BETA-D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN CEG 4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-GLUCOSE; 4,6-O- HETSYN 2 CEG [(1S)-1-CARBOXYETHYLIDENE]-BETA-D-GLUCOSE; 4,6-O- HETSYN 3 CEG [(1S)-1-CARBOXYETHYLIDENE]-D-GLUCOSE; 4,6-O-[(1S)-1- HETSYN 4 CEG CARBOXYETHYLIDENE]-GLUCOSE FORMUL 1 GAL 2(C6 H12 O6) FORMUL 1 BDP 2(C6 H10 O7) FORMUL 1 BGC 2(C6 H12 O6) FORMUL 1 MAN 4(C6 H12 O6) FORMUL 1 CEG 2(C9 H14 O8) LINK O3 GAL A 1 C1 BDP A 2 1555 1555 1.39 LINK O3 BDP A 2 C1 BGC A 3 1555 1555 1.39 LINK O4 BDP A 2 C1 MAN A 11 1555 1555 1.43 LINK O3 BGC A 3 C1 MAN A 4 1555 1555 1.42 LINK O2 MAN A 4 C1 GAL A 5 1555 1555 1.41 LINK O3 GAL A 5 C1 BDP A 6 1555 1555 1.39 LINK O3 BDP A 6 C1 BGC A 7 1555 1555 1.39 LINK O4 BDP A 6 C1 MAN A 9 1555 1555 1.43 LINK O3 BGC A 7 C1 MAN A 8 1555 1555 1.42 LINK O2 MAN A 9 C1 CEG A 10 1555 1555 1.39 LINK O2 MAN A 11 C1 CEG A 12 1555 1555 1.39 CRYST1 20.300 11.780 30.440 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 0.100000 0.000000 0.000000 0.00000 ORIGX2 0.000000 0.100000 0.000000 0.00000 ORIGX3 0.000000 0.000000 0.100000 0.00000 SCALE1 0.049261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.084890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.032852 0.00000 CONECT 1 2 10 12 CONECT 2 1 3 7 13 CONECT 3 2 4 8 14 CONECT 4 3 5 9 15 CONECT 5 4 6 10 16 CONECT 6 5 11 17 18 CONECT 7 2 CONECT 8 3 19 CONECT 9 4 CONECT 10 1 5 CONECT 11 6 CONECT 12 1 CONECT 13 2 CONECT 14 3 CONECT 15 4 CONECT 16 5 CONECT 17 6 CONECT 18 6 CONECT 19 8 20 28 31 CONECT 20 19 21 25 32 CONECT 21 20 22 26 33 CONECT 22 21 23 27 34 CONECT 23 22 24 28 35 CONECT 24 23 29 30 CONECT 25 20 CONECT 26 21 41 CONECT 27 22 187 CONECT 28 19 23 CONECT 29 24 CONECT 30 24 CONECT 31 19 CONECT 32 20 CONECT 33 21 CONECT 34 22 CONECT 35 23 CONECT 36 37 41 42 47 CONECT 37 36 38 43 48 CONECT 38 37 39 44 49 CONECT 39 38 40 45 50 CONECT 40 39 46 51 52 CONECT 41 26 36 45 53 CONECT 42 36 CONECT 43 37 54 CONECT 44 38 CONECT 45 39 41 CONECT 46 40 CONECT 47 36 CONECT 48 37 CONECT 49 38 CONECT 50 39 CONECT 51 40 CONECT 52 40 CONECT 53 41 CONECT 54 43 55 63 65 CONECT 55 54 56 60 66 CONECT 56 55 57 61 67 CONECT 57 56 58 62 68 CONECT 58 57 59 63 69 CONECT 59 58 64 70 71 CONECT 60 55 72 CONECT 61 56 CONECT 62 57 CONECT 63 54 58 CONECT 64 59 CONECT 65 54 CONECT 66 55 CONECT 67 56 CONECT 68 57 CONECT 69 58 CONECT 70 59 CONECT 71 59 CONECT 72 60 73 81 83 CONECT 73 72 74 78 84 CONECT 74 73 75 79 85 CONECT 75 74 76 80 86 CONECT 76 75 77 81 87 CONECT 77 76 82 88 89 CONECT 78 73 CONECT 79 74 90 CONECT 80 75 CONECT 81 72 76 CONECT 82 77 CONECT 83 72 CONECT 84 73 CONECT 85 74 CONECT 86 75 CONECT 87 76 CONECT 88 77 CONECT 89 77 CONECT 90 79 91 99 102 CONECT 91 90 92 96 103 CONECT 92 91 93 97 104 CONECT 93 92 94 98 105 CONECT 94 93 95 99 106 CONECT 95 94 100 101 CONECT 96 91 CONECT 97 92 112 CONECT 98 93 143 CONECT 99 90 94 CONECT 100 95 CONECT 101 95 CONECT 102 90 CONECT 103 91 CONECT 104 92 CONECT 105 93 CONECT 106 94 CONECT 107 108 112 113 118 CONECT 108 107 109 114 119 CONECT 109 108 110 115 120 CONECT 110 109 111 116 121 CONECT 111 110 117 122 123 CONECT 112 97 107 116 124 CONECT 113 107 CONECT 114 108 125 CONECT 115 109 CONECT 116 110 112 CONECT 117 111 CONECT 118 107 CONECT 119 108 CONECT 120 109 CONECT 121 110 CONECT 122 111 CONECT 123 111 CONECT 124 112 CONECT 125 114 126 134 136 CONECT 126 125 127 131 137 CONECT 127 126 128 132 138 CONECT 128 127 129 133 139 CONECT 129 128 130 134 140 CONECT 130 129 135 141 142 CONECT 131 126 CONECT 132 127 CONECT 133 128 CONECT 134 125 129 CONECT 135 130 CONECT 136 125 CONECT 137 126 CONECT 138 127 CONECT 139 128 CONECT 140 129 CONECT 141 130 CONECT 142 130 CONECT 143 98 144 152 154 CONECT 144 143 145 149 155 CONECT 145 144 146 150 156 CONECT 146 145 147 151 157 CONECT 147 146 148 152 158 CONECT 148 147 153 159 160 CONECT 149 144 161 CONECT 150 145 CONECT 151 146 CONECT 152 143 147 CONECT 153 148 CONECT 154 143 CONECT 155 144 CONECT 156 145 CONECT 157 146 CONECT 158 147 CONECT 159 148 CONECT 160 148 CONECT 161 149 162 173 177 CONECT 162 161 163 170 178 CONECT 163 162 164 171 179 CONECT 164 163 165 172 180 CONECT 165 164 166 173 181 CONECT 166 165 174 182 183 CONECT 167 168 169 172 174 CONECT 168 167 175 176 CONECT 169 167 184 185 186 CONECT 170 162 CONECT 171 163 CONECT 172 164 167 CONECT 173 161 165 CONECT 174 166 167 CONECT 175 168 CONECT 176 168 CONECT 177 161 CONECT 178 162 CONECT 179 163 CONECT 180 164 CONECT 181 165 CONECT 182 166 CONECT 183 166 CONECT 184 169 CONECT 185 169 CONECT 186 169 CONECT 187 27 188 196 198 CONECT 188 187 189 193 199 CONECT 189 188 190 194 200 CONECT 190 189 191 195 201 CONECT 191 190 192 196 202 CONECT 192 191 197 203 204 CONECT 193 188 205 CONECT 194 189 CONECT 195 190 CONECT 196 187 191 CONECT 197 192 CONECT 198 187 CONECT 199 188 CONECT 200 189 CONECT 201 190 CONECT 202 191 CONECT 203 192 CONECT 204 192 CONECT 205 193 206 217 221 CONECT 206 205 207 214 222 CONECT 207 206 208 215 223 CONECT 208 207 209 216 224 CONECT 209 208 210 217 225 CONECT 210 209 218 226 227 CONECT 211 212 213 216 218 CONECT 212 211 219 220 CONECT 213 211 228 229 230 CONECT 214 206 CONECT 215 207 CONECT 216 208 211 CONECT 217 205 209 CONECT 218 210 211 CONECT 219 212 CONECT 220 212 CONECT 221 205 CONECT 222 206 CONECT 223 207 CONECT 224 208 CONECT 225 209 CONECT 226 210 CONECT 227 210 CONECT 228 213 CONECT 229 213 CONECT 230 213 MASTER 193 0 12 0 0 0 0 6 144 0 230 0 END