HEADER TYPE 1 COPPER PROTEIN 14-SEP-88 1CBP OBSLTE 21-APR-97 1CBP 2CBP TITLE PHASE DETERMINATION BY MULTIPLE-*WAVELENGTH X-RAY TITLE 2 DIFFRACTION. CRYSTAL STRUCTURE OF A BASIC (QUOTE) TITLE 3 *BLUE(QUOTE) COPPER PROTEIN FROM CUCUMBERS COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS TYPE 1 COPPER PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GUSS REVDAT 4 15-OCT-91 1CBP 1 REMARK REVDAT 3 15-JAN-91 1CBP 1 FORMUL REVDAT 2 09-JAN-89 1CBP 1 SEQRES REVDAT 1 09-OCT-88 1CBP 0 JRNL AUTH J.M.GUSS,E.A.MERRITT,R.P.PHIZACKERLY,B.HEDMAN, JRNL AUTH 2 M.MURATA,K.O.HODGSON,H.C.FREEMAN JRNL TITL PHASE DETERMINATION BY MULTIPLE-WAVELENGTH X-RAY JRNL TITL 2 DIFFRACTION. CRYSTAL STRUCTURE OF A BASIC JRNL TITL 3 (QUOTE)BLUE(QUOTE) COPPER PROTEIN FROM CUCUMBERS JRNL REF SCIENCE V. 241 806 1988 JRNL REFN ASTM SCIEAS US ISSN 0036-8075 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.MURATA,G.S.BEGG,F.LAMBROU,B.LESLIE,R.J.SIMPSON, REMARK 1 AUTH 2 H.C.FREEMAN,F.J.MORGAN REMARK 1 TITL AMINO ACID SEQUENCE OF A BASIC BLUE PROTEIN FROM REMARK 1 TITL 2 CUCUMBER SEEDLINGS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 79 6434 1982 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.M.COLMAN,H.C.FREEMAN,J.M.GUSS,M.MURATA, REMARK 1 AUTH 2 V.A.NORRIS,J.A.M.RAMSHAW,M.P.VENKATAPPA,L.E.VICKERY REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC DATA FOR A BASIC REMARK 1 TITL 2 COPPER-CONTAINING PROTEIN FROM CUCUMBER SEEDLINGS REMARK 1 REF J.MOL.BIOL. V. 112 649 1977 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 86 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CBP COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1CBP THE LIGANDS OF THE CU ION ARE ND1 HIS 39, SG CYS 79, REMARK 5 1CBP ND1 HIS 84, AND SD MET 89. 1CBP REMARK 6 REMARK 6 1CBP CORRECTION. CORRECT TYPOGRAPHICAL ERROR ON SEQRES REMARK 6 RECORD. 1CBP 09-JAN-89. 1CBP REMARK 7 REMARK 7 1CBP CORRECTION. CORRECT FORMAT OF FORMUL RECORD. 15-JAN- REMARK 7 91. 1CBP REMARK 8 REMARK 8 1CBP CORRECTION. ADD MISSING COMMA IN REFERENCE 3. 15-OCT- REMARK 8 91. 1CBP REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.44000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.44000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA 1 REMARK 465 VAL 2 REMARK 465 TYR 3 REMARK 465 VAL 4 REMARK 465 VAL 5 REMARK 465 GLY 6 REMARK 465 GLY 7 REMARK 465 SER 8 REMARK 465 GLY 9 REMARK 465 GLY 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP 11 N C O CB CG CD1 CD2 REMARK 470 TRP 11 NE1 CE2 CE3 CZ2 CZ3 CH2 REMARK 470 THR 12 N C O CB OG1 CG2 REMARK 470 PHE 13 N C O CB CG CD1 CD2 REMARK 470 PHE 13 CE1 CE2 CZ REMARK 470 ASN 14 N C O CB CG OD1 ND2 REMARK 470 THR 15 N C O CB OG1 CG2 REMARK 470 GLU 16 N C O CB CG CD OE1 REMARK 470 GLU 16 OE2 REMARK 470 SER 17 N C O CB OG REMARK 470 TRP 18 N C O CB CG CD1 CD2 REMARK 470 TRP 18 NE1 CE2 CE3 CZ2 CZ3 CH2 REMARK 470 PRO 19 N C O CB CG CD REMARK 470 LYS 20 N C O CB CG CD CE REMARK 470 LYS 20 NZ REMARK 470 GLY 21 N C O REMARK 470 LYS 22 N C O CB CG CD CE REMARK 470 LYS 22 NZ REMARK 470 ARG 23 N C O CB CG CD NE REMARK 470 ARG 23 CZ NH1 NH2 REMARK 470 PHE 24 N C O CB CG CD1 CD2 REMARK 470 PHE 24 CE1 CE2 CZ REMARK 470 ARG 25 N C O CB CG CD NE REMARK 470 ARG 25 CZ NH1 NH2 REMARK 470 ALA 26 N C O CB REMARK 470 GLY 27 N C O REMARK 470 ASP 28 N C O CB CG OD1 OD2 REMARK 470 ILE 29 N C O CB CG1 CG2 CD1 REMARK 470 LEU 30 N C O CB CG CD1 CD2 REMARK 470 LEU 31 N C O CB CG CD1 CD2 REMARK 470 PHE 32 N C O CB CG CD1 CD2 REMARK 470 PHE 32 CE1 CE2 CZ REMARK 470 ASN 33 N C O CB CG OD1 ND2 REMARK 470 TYR 34 N C O CB CG CD1 CD2 REMARK 470 TYR 34 CE1 CE2 CZ OH REMARK 470 ASN 35 N C O CB CG OD1 ND2 REMARK 470 PRO 36 N C O CB CG CD REMARK 470 THR 37 N C O CB OG1 CG2 REMARK 470 MET 38 N C O CB CG SD CE REMARK 470 HIS 39 N C O CB CG ND1 CD2 REMARK 470 HIS 39 CE1 NE2 REMARK 470 ASN 40 N C O CB CG OD1 ND2 REMARK 470 VAL 41 N C O CB CG1 CG2 REMARK 470 VAL 42 N C O CB CG1 CG2 REMARK 470 VAL 43 N C O CB CG1 CG2 REMARK 470 VAL 44 N C O CB CG1 CG2 REMARK 470 ASN 45 N C O CB CG OD1 ND2 REMARK 470 GLN 46 N C O CB CG CD OE1 REMARK 470 GLN 46 NE2 REMARK 470 GLY 47 N C O REMARK 470 GLY 48 N C O REMARK 470 PHE 49 N C O CB CG CD1 CD2 REMARK 470 PHE 49 CE1 CE2 CZ REMARK 470 SER 50 N C O CB OG REMARK 470 THR 51 N C O CB OG1 CG2 REMARK 470 CYS 52 N C O CB SG REMARK 470 ASN 53 N C O CB CG OD1 ND2 REMARK 470 THR 54 N C O CB OG1 CG2 REMARK 470 PRO 55 N C O CB CG CD REMARK 470 ALA 56 N C O CB REMARK 470 GLY 57 N C O REMARK 470 ALA 58 N C O CB REMARK 470 LYS 59 N C O CB CG CD CE REMARK 470 LYS 59 NZ REMARK 470 VAL 60 N C O CB CG1 CG2 REMARK 470 TYR 61 N C O CB CG CD1 CD2 REMARK 470 TYR 61 CE1 CE2 CZ OH REMARK 470 THR 62 N C O CB OG1 CG2 REMARK 470 SER 63 N C O CB OG REMARK 470 GLY 64 N C O REMARK 470 ARG 65 N C O CB CG CD NE REMARK 470 ARG 65 CZ NH1 NH2 REMARK 470 ASP 66 N C O CB CG OD1 OD2 REMARK 470 GLN 67 N C O CB CG CD OE1 REMARK 470 GLN 67 NE2 REMARK 470 ILE 68 N C O CB CG1 CG2 CD1 REMARK 470 LYS 69 N C O CB CG CD CE REMARK 470 LYS 69 NZ REMARK 470 LEU 70 N C O CB CG CD1 CD2 REMARK 470 PRO 71 N C O CB CG CD REMARK 470 LYS 72 N C O CB CG CD CE REMARK 470 LYS 72 NZ REMARK 470 GLY 73 N C O REMARK 470 GLN 74 N C O CB CG CD OE1 REMARK 470 GLN 74 NE2 REMARK 470 SER 75 N C O CB OG REMARK 470 TYR 76 N C O CB CG CD1 CD2 REMARK 470 TYR 76 CE1 CE2 CZ OH REMARK 470 PHE 77 N C O CB CG CD1 CD2 REMARK 470 PHE 77 CE1 CE2 CZ REMARK 470 ILE 78 N C O CB CG1 CG2 CD1 REMARK 470 CYS 79 N C O CB SG REMARK 470 ASN 80 N C O CB CG OD1 ND2 REMARK 470 PHE 81 N C O CB CG CD1 CD2 REMARK 470 PHE 81 CE1 CE2 CZ REMARK 470 PRO 82 N C O CB CG CD REMARK 470 GLY 83 N C O REMARK 470 HIS 84 N C O CB CG ND1 CD2 REMARK 470 HIS 84 CE1 NE2 REMARK 470 CYS 85 N C O CB SG REMARK 470 GLN 86 N C O CB CG CD OE1 REMARK 470 GLN 86 NE2 REMARK 470 SER 87 N C O CB OG REMARK 470 GLY 88 N C O REMARK 470 MET 89 N C O CB CG SD CE REMARK 470 LYS 90 N C O CB CG CD CE REMARK 470 LYS 90 NZ REMARK 470 ILE 91 N C O CB CG1 CG2 CD1 REMARK 470 ALA 92 N C O CB REMARK 470 VAL 93 N C O CB CG1 CG2 REMARK 470 ASN 94 N C O CB CG OD1 ND2 REMARK 470 ALA 95 N C O CB REMARK 470 LEU 96 N C O CB CG CD1 CD2 SEQRES 1 96 ALA VAL TYR VAL VAL GLY GLY SER GLY GLY TRP THR PHE SEQRES 2 96 ASN THR GLU SER TRP PRO LYS GLY LYS ARG PHE ARG ALA SEQRES 3 96 GLY ASP ILE LEU LEU PHE ASN TYR ASN PRO THR MET HIS SEQRES 4 96 ASN VAL VAL VAL VAL ASN GLN GLY GLY PHE SER THR CYS SEQRES 5 96 ASN THR PRO ALA GLY ALA LYS VAL TYR THR SER GLY ARG SEQRES 6 96 ASP GLN ILE LYS LEU PRO LYS GLY GLN SER TYR PHE ILE SEQRES 7 96 CYS ASN PHE PRO GLY HIS CYS GLN SER GLY MET LYS ILE SEQRES 8 96 ALA VAL ASN ALA LEU HET CU 1 1 HETNAM CU COPPER (II) ION FORMUL 2 CU CU 2+ CRYST1 30.880 46.410 65.570 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015251 0.00000