data_1CDS # _entry.id 1CDS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1CDS WWPDB D_1000172264 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CDS _pdbx_database_status.recvd_initial_deposition_date 1994-06-01 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fletcher, C.M.' 1 'Harrison, R.A.' 2 'Lachmann, P.J.' 3 'Neuhaus, D.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of a soluble, glycosylated form of the human complement regulatory protein CD59.' Structure 2 185 199 1994 STRUE6 UK 0969-2126 2005 ? 7520819 '10.1016/S0969-2126(00)00020-4' 1 'Sequence-Specific 1H-NMR Assignments and Folding Topology of Human Cd59' 'Protein Sci.' 2 2015 ? 1993 PRCIEI US 0961-8368 0795 ? ? ? 2 'Membrane Defence Against Complement Lysis: The Structure and Biological Properties of Cd59' Immunol.Res. 12 258 ? 1993 ? US 0257-277X 2031 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fletcher, C.M.' 1 ? primary 'Harrison, R.A.' 2 ? primary 'Lachmann, P.J.' 3 ? primary 'Neuhaus, D.' 4 ? 1 'Fletcher, C.M.' 5 ? 1 'Harrison, R.A.' 6 ? 1 'Lachmann, P.J.' 7 ? 1 'Neuhaus, D.' 8 ? 2 'Davies, A.' 9 ? 2 'Lachmann, P.J.' 10 ? # _cell.entry_id 1CDS _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CDS _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man CD59 8970.106 1 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLEN _entity_poly.pdbx_seq_one_letter_code_can LQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLEN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 GLN n 1 3 CYS n 1 4 TYR n 1 5 ASN n 1 6 CYS n 1 7 PRO n 1 8 ASN n 1 9 PRO n 1 10 THR n 1 11 ALA n 1 12 ASP n 1 13 CYS n 1 14 LYS n 1 15 THR n 1 16 ALA n 1 17 VAL n 1 18 ASN n 1 19 CYS n 1 20 SER n 1 21 SER n 1 22 ASP n 1 23 PHE n 1 24 ASP n 1 25 ALA n 1 26 CYS n 1 27 LEU n 1 28 ILE n 1 29 THR n 1 30 LYS n 1 31 ALA n 1 32 GLY n 1 33 LEU n 1 34 GLN n 1 35 VAL n 1 36 TYR n 1 37 ASN n 1 38 LYS n 1 39 CYS n 1 40 TRP n 1 41 LYS n 1 42 PHE n 1 43 GLU n 1 44 HIS n 1 45 CYS n 1 46 ASN n 1 47 PHE n 1 48 ASN n 1 49 ASP n 1 50 VAL n 1 51 THR n 1 52 THR n 1 53 ARG n 1 54 LEU n 1 55 ARG n 1 56 GLU n 1 57 ASN n 1 58 GLU n 1 59 LEU n 1 60 THR n 1 61 TYR n 1 62 TYR n 1 63 CYS n 1 64 CYS n 1 65 LYS n 1 66 LYS n 1 67 ASP n 1 68 LEU n 1 69 CYS n 1 70 ASN n 1 71 PHE n 1 72 ASN n 1 73 GLU n 1 74 GLN n 1 75 LEU n 1 76 GLU n 1 77 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CD59_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P13987 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLR ENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAAWSLHP ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1CDS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 77 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P13987 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 102 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 77 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_ensemble.entry_id 1CDS _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1CDS _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1CDS _struct.title 'STRUCTURE OF A SOLUBLE, GLYCOSYLATED FORM OF THE HUMAN COMPLEMENT REGULATORY PROTEIN CD59' _struct.pdbx_descriptor 'CD59 COMPLEXED WITH GLCNAC-BETA-1,4-(FUC-ALPHA-1,6)-GLCNAC-BETA-1 (NMR, 10 STRUCTURES)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CDS _struct_keywords.pdbx_keywords 'COMPLEMENT REGULATORY PROTEIN' _struct_keywords.text 'COMPLEMENT REGULATORY PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A Y N 1 ? B N N 2 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id H1 _struct_conf.beg_label_comp_id PHE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 47 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 56 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PHE _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 47 _struct_conf.end_auth_comp_id GLU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 56 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details 'IRREGULAR H-BONDS AT C-T END' _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 26 SG ? ? A CYS 3 A CYS 26 1_555 ? ? ? ? ? ? ? 2.018 ? ? disulf2 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 13 SG ? ? A CYS 6 A CYS 13 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf3 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 39 SG ? ? A CYS 19 A CYS 39 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf4 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 45 A CYS 63 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf5 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 69 SG ? ? A CYS 64 A CYS 69 1_555 ? ? ? ? ? ? ? 2.023 ? ? covale1 covale one ? A ASN 18 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 18 B NAG 1 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.386 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 2 ? S2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 LEU A 1 ? CYS A 6 ? LEU A 1 CYS A 6 S1 2 THR A 15 ? CYS A 19 ? THR A 15 CYS A 19 S2 1 GLN A 34 ? TRP A 40 ? GLN A 34 TRP A 40 S2 2 ALA A 25 ? ALA A 31 ? ALA A 25 ALA A 31 S2 3 LEU A 59 ? LYS A 65 ? LEU A 59 LYS A 65 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1 1 2 N CYS A 3 ? N CYS A 3 O VAL A 17 ? O VAL A 17 S2 1 2 O TRP A 40 ? O TRP A 40 N ALA A 25 ? N ALA A 25 S2 2 3 O CYS A 26 ? O CYS A 26 N CYS A 64 ? N CYS A 64 # _database_PDB_matrix.entry_id 1CDS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1CDS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'ASN 18 IS COVALENTLY BOUND THROUGH ND2 TO NAG 78 AT C1.' # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 TRP 40 40 40 TRP TRP A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ASN 77 77 77 ASN ASN A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 18 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 18 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-09-30 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_database_status 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' struct_asym 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_site 17 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_chem_comp.name' 5 4 'Structure model' '_chem_comp.type' 6 4 'Structure model' '_entity.formula_weight' 7 4 'Structure model' '_entity.pdbx_description' 8 4 'Structure model' '_entity.pdbx_number_of_molecules' 9 4 'Structure model' '_entity.type' 10 4 'Structure model' '_pdbx_database_status.process_site' 11 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 4 'Structure model' '_struct_conn.pdbx_role' 14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 11 ? ? -106.62 47.60 2 1 ASP A 12 ? ? -164.46 30.30 3 1 VAL A 17 ? ? -171.50 141.81 4 1 CYS A 19 ? ? -100.70 41.01 5 1 SER A 20 ? ? 47.10 -168.14 6 1 ASP A 22 ? ? 74.06 36.72 7 1 PHE A 47 ? ? -86.01 44.51 8 1 ASN A 48 ? ? -166.14 -37.09 9 1 GLU A 56 ? ? -125.49 -165.03 10 1 ASN A 57 ? ? -151.34 -60.64 11 1 LEU A 59 ? ? 175.90 172.36 12 1 TYR A 61 ? ? 179.60 122.26 13 1 ASN A 72 ? ? 56.00 71.21 14 1 GLU A 73 ? ? 163.47 60.48 15 1 GLN A 74 ? ? -137.76 -58.13 16 1 GLU A 76 ? ? 76.69 177.50 17 2 ASP A 12 ? ? -176.62 42.19 18 2 ALA A 16 ? ? 41.22 92.95 19 2 CYS A 19 ? ? -48.64 101.63 20 2 SER A 20 ? ? -119.97 77.30 21 2 SER A 21 ? ? 172.27 77.49 22 2 ASP A 24 ? ? -148.30 15.35 23 2 ASN A 46 ? ? -144.48 36.88 24 2 ASN A 48 ? ? -157.85 -45.62 25 2 GLU A 56 ? ? -123.91 -158.72 26 2 ASN A 57 ? ? -157.39 -50.64 27 2 LEU A 59 ? ? -171.36 136.43 28 2 LEU A 68 ? ? 70.26 61.60 29 2 ASN A 70 ? ? -92.90 46.67 30 2 PHE A 71 ? ? -89.34 38.93 31 2 GLU A 73 ? ? 165.05 40.28 32 2 GLN A 74 ? ? -145.84 51.97 33 2 LEU A 75 ? ? -145.28 -51.63 34 2 GLU A 76 ? ? 64.59 88.39 35 3 ASP A 12 ? ? 171.35 35.59 36 3 SER A 20 ? ? -57.82 178.76 37 3 PHE A 23 ? ? -160.67 99.88 38 3 ILE A 28 ? ? -115.50 79.56 39 3 ALA A 31 ? ? -62.48 -169.93 40 3 ASN A 48 ? ? -177.92 -34.92 41 3 ASN A 57 ? ? -165.04 26.61 42 3 GLU A 58 ? ? -177.26 82.12 43 3 THR A 60 ? ? -110.92 79.78 44 3 LYS A 65 ? ? -143.76 40.96 45 3 GLU A 73 ? ? -179.74 49.57 46 3 GLN A 74 ? ? -149.44 26.42 47 4 ASP A 12 ? ? -165.06 39.90 48 4 LYS A 14 ? ? -144.84 47.58 49 4 THR A 15 ? ? -105.13 71.67 50 4 SER A 20 ? ? -66.52 -177.67 51 4 PHE A 23 ? ? -159.82 87.57 52 4 PHE A 47 ? ? -92.79 48.78 53 4 ASN A 48 ? ? -174.29 -36.01 54 4 ASN A 57 ? ? -103.23 -77.98 55 4 LEU A 59 ? ? -179.79 141.61 56 4 PHE A 71 ? ? -79.25 -168.15 57 4 GLU A 73 ? ? -179.06 47.96 58 4 GLN A 74 ? ? -148.93 54.25 59 4 LEU A 75 ? ? -165.50 -54.73 60 5 ASP A 12 ? ? 77.11 65.70 61 5 CYS A 13 ? ? -42.99 155.69 62 5 ALA A 16 ? ? 42.81 85.92 63 5 SER A 21 ? ? -174.12 -50.14 64 5 ASP A 22 ? ? 178.04 102.12 65 5 PHE A 23 ? ? -150.95 -40.13 66 5 ASP A 24 ? ? 67.15 -87.96 67 5 CYS A 45 ? ? -100.49 76.03 68 5 PHE A 47 ? ? 53.88 18.69 69 5 ASN A 48 ? ? -141.60 -47.52 70 5 GLU A 58 ? ? -102.77 74.06 71 5 CYS A 64 ? ? -114.49 -168.76 72 5 LYS A 65 ? ? -159.73 37.67 73 5 PHE A 71 ? ? -65.83 -164.49 74 5 GLU A 73 ? ? -165.15 57.86 75 5 GLN A 74 ? ? -158.49 65.38 76 5 LEU A 75 ? ? -179.21 -53.18 77 6 ALA A 11 ? ? -96.33 38.25 78 6 ASP A 12 ? ? -168.51 34.67 79 6 SER A 20 ? ? -55.48 -174.24 80 6 ASN A 48 ? ? -172.38 -38.00 81 6 ARG A 55 ? ? 72.08 44.21 82 6 ASN A 57 ? ? -121.90 -61.34 83 6 GLU A 58 ? ? -68.71 86.25 84 6 THR A 60 ? ? -120.83 -165.29 85 6 TYR A 61 ? ? -178.91 116.64 86 6 ASP A 67 ? ? -55.34 102.21 87 6 LEU A 68 ? ? 74.13 66.15 88 6 ASN A 72 ? ? 62.24 63.76 89 6 GLU A 73 ? ? 169.23 70.16 90 6 GLN A 74 ? ? -139.27 -65.79 91 7 ASP A 12 ? ? 169.41 38.99 92 7 CYS A 19 ? ? -94.09 38.74 93 7 SER A 21 ? ? 73.32 131.53 94 7 ASP A 22 ? ? 70.99 48.72 95 7 PHE A 23 ? ? 179.06 171.43 96 7 ASP A 24 ? ? 176.27 34.61 97 7 ALA A 25 ? ? 165.15 115.69 98 7 ASN A 48 ? ? -135.28 -46.59 99 7 PHE A 71 ? ? -104.83 -168.75 100 7 GLU A 73 ? ? -171.07 33.67 101 7 GLN A 74 ? ? -113.37 -71.07 102 8 ALA A 11 ? ? -105.96 47.47 103 8 ASP A 12 ? ? -169.05 32.49 104 8 THR A 15 ? ? -69.10 88.73 105 8 SER A 20 ? ? -72.91 -158.75 106 8 ASP A 22 ? ? -97.16 57.86 107 8 ASP A 24 ? ? -147.40 12.74 108 8 ALA A 31 ? ? -89.38 41.60 109 8 LEU A 33 ? ? 179.52 -44.29 110 8 ASN A 48 ? ? -170.47 -36.20 111 8 ASN A 57 ? ? -141.70 -59.94 112 8 THR A 60 ? ? -117.92 69.99 113 8 LYS A 65 ? ? -145.43 30.31 114 8 ASP A 67 ? ? -58.86 89.82 115 8 LEU A 68 ? ? 73.99 73.79 116 8 PHE A 71 ? ? -142.89 35.06 117 8 ASN A 72 ? ? 48.40 75.26 118 8 GLU A 73 ? ? 172.08 54.48 119 8 GLN A 74 ? ? -175.04 47.62 120 8 LEU A 75 ? ? 172.67 -36.61 121 9 ALA A 11 ? ? -96.58 35.81 122 9 ASP A 12 ? ? -169.38 35.50 123 9 LYS A 14 ? ? -171.20 39.40 124 9 CYS A 19 ? ? -55.71 -90.52 125 9 SER A 20 ? ? 62.24 136.79 126 9 SER A 21 ? ? 77.62 109.42 127 9 PHE A 47 ? ? -90.01 37.43 128 9 ASN A 48 ? ? -155.87 -42.48 129 9 ARG A 55 ? ? 72.44 39.81 130 9 ASN A 57 ? ? -148.49 -66.40 131 9 LEU A 59 ? ? 177.33 142.11 132 9 TYR A 61 ? ? -177.96 114.56 133 9 LYS A 65 ? ? -168.97 61.49 134 9 ASP A 67 ? ? -59.58 97.91 135 9 LEU A 68 ? ? 70.40 68.68 136 9 GLU A 73 ? ? -171.13 37.64 137 9 LEU A 75 ? ? -165.89 54.94 138 10 ALA A 11 ? ? -118.78 55.03 139 10 ASP A 12 ? ? -179.30 33.68 140 10 LYS A 14 ? ? -143.50 12.10 141 10 VAL A 17 ? ? -174.95 140.16 142 10 CYS A 19 ? ? -49.89 -93.89 143 10 SER A 20 ? ? -178.08 -171.87 144 10 ASP A 24 ? ? -153.21 22.60 145 10 ALA A 31 ? ? -88.90 -156.53 146 10 PHE A 47 ? ? -88.06 42.35 147 10 ASN A 48 ? ? -166.70 -44.47 148 10 GLU A 56 ? ? -122.87 -167.65 149 10 ASN A 57 ? ? -156.25 -73.34 150 10 GLU A 58 ? ? -61.21 90.44 151 10 LEU A 59 ? ? -175.70 148.42 152 10 ASP A 67 ? ? -50.87 104.19 153 10 LEU A 68 ? ? 72.94 62.75 154 10 PHE A 71 ? ? -97.34 43.84 155 10 GLU A 73 ? ? 178.41 44.21 156 10 LEU A 75 ? ? -128.98 -75.29 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 53 ? ? 0.202 'SIDE CHAIN' 2 1 ARG A 55 ? ? 0.306 'SIDE CHAIN' 3 2 ARG A 53 ? ? 0.316 'SIDE CHAIN' 4 2 ARG A 55 ? ? 0.304 'SIDE CHAIN' 5 3 ARG A 53 ? ? 0.211 'SIDE CHAIN' 6 3 ARG A 55 ? ? 0.281 'SIDE CHAIN' 7 4 ARG A 53 ? ? 0.152 'SIDE CHAIN' 8 4 ARG A 55 ? ? 0.277 'SIDE CHAIN' 9 5 ARG A 53 ? ? 0.308 'SIDE CHAIN' 10 5 ARG A 55 ? ? 0.301 'SIDE CHAIN' 11 6 ARG A 53 ? ? 0.289 'SIDE CHAIN' 12 6 ARG A 55 ? ? 0.316 'SIDE CHAIN' 13 7 ARG A 53 ? ? 0.281 'SIDE CHAIN' 14 7 ARG A 55 ? ? 0.200 'SIDE CHAIN' 15 8 ARG A 53 ? ? 0.256 'SIDE CHAIN' 16 8 ARG A 55 ? ? 0.229 'SIDE CHAIN' 17 9 ARG A 53 ? ? 0.211 'SIDE CHAIN' 18 9 ARG A 55 ? ? 0.202 'SIDE CHAIN' 19 10 ARG A 53 ? ? 0.209 'SIDE CHAIN' 20 10 ARG A 55 ? ? 0.226 'SIDE CHAIN' # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 78 n B 2 NAG 2 B NAG 2 ? NAG 79 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n #