HEADER SERINE PROTEASE 03-DEC-95 1CEB TITLE THE STRUCTURE OF THE NON-COVALENT COMPLEX OF RECOMBINANT KRINGLE 1 TITLE 2 DOMAIN OF HUMAN PLASMINOGEN WITH AMCHA (TRANS-4- TITLE 3 AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KRINGLE 1; COMPND 5 SYNONYM: K1PG; COMPND 6 EC: 3.4.21.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BLOOD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TULINSKY,I.I.MATHEWS REVDAT 3 29-NOV-17 1CEB 1 HELIX REVDAT 2 24-FEB-09 1CEB 1 VERSN REVDAT 1 03-APR-96 1CEB 0 JRNL AUTH I.I.MATHEWS,P.VANDERHOFF-HANAVER,F.J.CASTELLINO,A.TULINSKY JRNL TITL CRYSTAL STRUCTURES OF THE RECOMBINANT KRINGLE 1 DOMAIN OF JRNL TITL 2 HUMAN PLASMINOGEN IN COMPLEXES WITH THE LIGANDS JRNL TITL 3 EPSILON-AMINOCAPROIC ACID AND JRNL TITL 4 TRANS-4-(AMINOMETHYL)CYCLOHEXANE-1-CARBOXYLIC ACID. JRNL REF BIOCHEMISTRY V. 35 2567 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8611560 JRNL DOI 10.1021/BI9521351 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.REJANTE,M.LLINAS REMARK 1 TITL 1H-NMR ASSIGNMENTS AND SECONDARY STRUCTURE OF HUMAN REMARK 1 TITL 2 PLASMINOGEN KRINGLE 1 REMARK 1 REF EUR.J.BIOCHEM. V. 221 939 1994 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.-P.WU,K.P.PADMANABHAN,A.TULINSKY REMARK 1 TITL THE STRUCTURE OF RECOMBINANT PLASMINOGEN KRINGLE 1 AND THE REMARK 1 TITL 2 FIBRIN BINDING SITE REMARK 1 REF BLOOD COAGULATION V. 5 157 1994 REMARK 1 REF 2 FIBRINOLYSIS REMARK 1 REFN ISSN 0957-5235 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.TULINSKY,C.H.PARK,B.MAO,M.LLINAS REMARK 1 TITL LYSINE(SLASH)FIBRIN BINDING SITES OF KRINGLES MODELED AFTER REMARK 1 TITL 2 THE STRUCTURE OF KRINGLE 1 OF PROTHROMBIN REMARK 1 REF PROTEINS V. 3 85 1988 REMARK 1 REFN ISSN 0887-3585 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 57.0 REMARK 3 NUMBER OF REFLECTIONS : 5900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.050 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.060 ; 0.060 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.030 ; 0.040 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.180 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.230 ; 0.600 REMARK 3 MULTIPLE TORSION (A) : 0.320 ; 0.600 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.280 ; 0.600 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.700 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 21.700; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.600 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 NO ELECTRON DENSITY WAS OBSERVED FOR THE INTERKRINGLE REMARK 3 RESIDUES 3A - 2A AND 80 - 86 IN BOTH MOLECULES. REMARK 4 REMARK 4 1CEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.07950 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A -1 REMARK 465 SER A 0 REMARK 465 GLU A 80 REMARK 465 GLU A 81 REMARK 465 GLU A 82 REMARK 465 CYS A 83 REMARK 465 MET A 84 REMARK 465 HIS A 85 REMARK 465 LEU B -1 REMARK 465 SER B 0 REMARK 465 GLU B 80 REMARK 465 GLU B 81 REMARK 465 GLU B 82 REMARK 465 CYS B 83 REMARK 465 MET B 84 REMARK 465 HIS B 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 34 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET A 13 O LYS A 15 2.15 REMARK 500 NH1 ARG B 10 O GLU B 43 2.18 REMARK 500 OD1 ASN B 5 ND2 ASN B 52 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ILE A 20 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 THR A 39 C - N - CA ANGL. DEV. = 15.0 DEGREES REMARK 500 GLU A 46 OE1 - CD - OE2 ANGL. DEV. = 11.6 DEGREES REMARK 500 TYR A 49 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 51 NH1 - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = 13.9 DEGREES REMARK 500 TYR B 9 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 10 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS B 17 CA - CB - CG ANGL. DEV. = 20.7 DEGREES REMARK 500 GLU B 46 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 GLU B 46 CB - CG - CD ANGL. DEV. = 21.1 DEGREES REMARK 500 GLU B 46 OE1 - CD - OE2 ANGL. DEV. = -9.8 DEGREES REMARK 500 GLU B 47 CG - CD - OE1 ANGL. DEV. = 12.7 DEGREES REMARK 500 TYR B 49 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 51 NH1 - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG B 51 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 51 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 PRO B 53 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 LYS B 69 CB - CG - CD ANGL. DEV. = 19.1 DEGREES REMARK 500 LYS B 69 CG - CD - CE ANGL. DEV. = 19.1 DEGREES REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR B 71 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP B 72 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 ASP B 72 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLU B 78 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 16 -169.72 -72.41 REMARK 500 CYS A 22 177.24 -59.82 REMARK 500 LEU A 45 59.53 -67.29 REMARK 500 GLU A 47 -143.05 56.63 REMARK 500 ASN A 52 67.86 -119.98 REMARK 500 PRO A 60 143.68 -29.22 REMARK 500 ASP A 72 156.69 176.89 REMARK 500 THR B 16 -169.98 -66.98 REMARK 500 ASN B 18 33.82 -99.36 REMARK 500 LEU B 45 55.38 -65.67 REMARK 500 GLU B 47 -130.73 37.43 REMARK 500 TYR B 49 158.08 -46.27 REMARK 500 ASN B 52 73.35 -114.26 REMARK 500 ASN B 55 50.25 73.88 REMARK 500 GLN B 58 5.35 -64.68 REMARK 500 PRO B 60 151.39 -43.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 70 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 22 10.35 REMARK 500 GLU A 68 -10.90 REMARK 500 GLN B 58 -10.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMH A 90 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMH B 90 DBREF 1CEB A -1 85 UNP P00747 PLMN_HUMAN 100 187 DBREF 1CEB B -1 85 UNP P00747 PLMN_HUMAN 100 187 SEQRES 1 A 88 LEU SER GLU CYS LYS THR GLY ASN GLY LYS ASN TYR ARG SEQRES 2 A 88 GLY THR MET SER LYS THR LYS ASN GLY ILE THR CYS GLN SEQRES 3 A 88 LYS TRP SER SER THR SER PRO HIS ARG PRO ARG PHE SER SEQRES 4 A 88 PRO ALA THR HIS PRO SER GLU GLY LEU GLU GLU ASN TYR SEQRES 5 A 88 CYS ARG ASN PRO ASP ASN ASP PRO GLN GLY PRO TRP CYS SEQRES 6 A 88 TYR THR THR ASP PRO GLU LYS ARG TYR ASP TYR CYS ASP SEQRES 7 A 88 ILE LEU GLU CYS GLU GLU GLU CYS MET HIS SEQRES 1 B 88 LEU SER GLU CYS LYS THR GLY ASN GLY LYS ASN TYR ARG SEQRES 2 B 88 GLY THR MET SER LYS THR LYS ASN GLY ILE THR CYS GLN SEQRES 3 B 88 LYS TRP SER SER THR SER PRO HIS ARG PRO ARG PHE SER SEQRES 4 B 88 PRO ALA THR HIS PRO SER GLU GLY LEU GLU GLU ASN TYR SEQRES 5 B 88 CYS ARG ASN PRO ASP ASN ASP PRO GLN GLY PRO TRP CYS SEQRES 6 B 88 TYR THR THR ASP PRO GLU LYS ARG TYR ASP TYR CYS ASP SEQRES 7 B 88 ILE LEU GLU CYS GLU GLU GLU CYS MET HIS HET AMH A 90 11 HET AMH B 90 11 HETNAM AMH TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID FORMUL 3 AMH 2(C8 H15 N O2) FORMUL 5 HOH *150(H2 O) HELIX 1 1 PRO A 41 GLU A 43 5 3 SHEET 1 SA1 2 SER A 14 THR A 16 0 SHEET 2 SA1 2 ILE A 20 CYS A 22 -1 SHEET 1 SA2 2 GLN A 23 TRP A 25 0 SHEET 2 SA2 2 GLU A 47 TYR A 49 -1 SHEET 1 SB1 2 SER B 14 THR B 16 0 SHEET 2 SB1 2 ILE B 20 CYS B 22 -1 SHEET 1 SB2 2 GLN B 23 TRP B 25 0 SHEET 2 SB2 2 GLU B 47 TYR B 49 -1 SSBOND 1 CYS A 1 CYS A 79 1555 1555 2.03 SSBOND 2 CYS A 22 CYS A 62 1555 1555 2.08 SSBOND 3 CYS A 50 CYS A 74 1555 1555 2.05 SSBOND 4 CYS B 1 CYS B 79 1555 1555 2.02 SSBOND 5 CYS B 22 CYS B 62 1555 1555 2.09 SSBOND 6 CYS B 50 CYS B 74 1555 1555 2.05 CISPEP 1 SER A 29 PRO A 30 0 1.28 CISPEP 2 SER B 29 PRO B 30 0 -0.08 SITE 1 AC1 9 THR A 12 ARG A 34 ASP A 54 ASP A 56 SITE 2 AC1 9 TRP A 61 TYR A 63 ARG A 70 TYR A 71 SITE 3 AC1 9 HOH A 357 SITE 1 AC2 10 THR B 12 ARG B 34 PHE B 35 ASP B 54 SITE 2 AC2 10 ASP B 56 TRP B 61 TYR B 63 ARG B 70 SITE 3 AC2 10 TYR B 71 HOH B 223 CRYST1 64.300 51.700 46.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021368 0.00000 MTRIX1 1 0.999560 -0.029470 0.003414 -0.41610 1 MTRIX2 1 -0.029442 -0.999535 -0.007949 -25.19968 1 MTRIX3 1 0.003647 0.007845 -0.999963 80.78391 1