data_1CK5 # _entry.id 1CK5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1CK5 RCSB RCSB000958 WWPDB D_1000000958 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.pdb_id 1T0K _pdbx_database_PDB_obs_spr.replace_pdb_id 1CK5 _pdbx_database_PDB_obs_spr.date 2006-07-25 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1CK5 _pdbx_database_status.recvd_initial_deposition_date 1999-04-30 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr OBS _pdbx_database_status.status_code_sf ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mao, H.' 1 'White, S.A.' 2 'Willamson, J.R.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex.' Nat.Struct.Biol. 6 1139 1147 1999 NSBIEW US 1072-8368 2024 ? 10581556 10.1038/70081 1 'Characterization of the Pre-Mrna Binding Site for Yeast Ribosomal Protein L32: The Importance of a Purine-Rich Loop' J.Mol.Biol. 250 447 ? 1995 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.1995.0389 2 'Structural Basis for the Regulation of Splicing of a Yeast Messenger RNA' 'Cell(Cambridge,Mass.)' 65 797 ? 1991 CELLB5 US 0092-8674 0998 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mao, H.' 1 primary 'White, S.A.' 2 primary 'Williamson, J.R.' 3 1 'Li, H.' 4 1 'Dalal, S.' 5 1 'Kohler, J.' 6 1 'Vilardell, J.' 7 1 'White, S.A.' 8 2 'Eng, F.J.' 9 2 'Warner, J.R.' 10 # _cell.entry_id 1CK5 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CK5 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'L30 33 NUCLEOTIDE RNA YL32' 10742.480 1 ? ? 'YEAST L30 PRE-MRNA BINDING SITE' ? 2 polymer man '60S RIBOSOMAL PROTEIN L30' 11299.168 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 RPL32,YGL030W 2 'RL30_YEAST, YL32,RP73' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGACCGGAGUGUCGCAAGACGCAGAGAUGGUCC GGACCGGAGUGUCGCAAGACGCAGAGAUGGUCC A ? 2 'polypeptide(L)' no no ;APVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAV GKLFRVGVVSILEAGDSDILTTLA ; ;APVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAV GKLFRVGVVSILEAGDSDILTTLA ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 C n 1 6 G n 1 7 G n 1 8 A n 1 9 G n 1 10 U n 1 11 G n 1 12 U n 1 13 C n 1 14 G n 1 15 C n 1 16 A n 1 17 A n 1 18 G n 1 19 A n 1 20 C n 1 21 G n 1 22 C n 1 23 A n 1 24 G n 1 25 A n 1 26 G n 1 27 A n 1 28 U n 1 29 G n 1 30 G n 1 31 U n 1 32 C n 1 33 C n 2 1 ALA n 2 2 PRO n 2 3 VAL n 2 4 LYS n 2 5 SER n 2 6 GLN n 2 7 GLU n 2 8 SER n 2 9 ILE n 2 10 ASN n 2 11 GLN n 2 12 LYS n 2 13 LEU n 2 14 ALA n 2 15 LEU n 2 16 VAL n 2 17 ILE n 2 18 LYS n 2 19 SER n 2 20 GLY n 2 21 LYS n 2 22 TYR n 2 23 THR n 2 24 LEU n 2 25 GLY n 2 26 TYR n 2 27 LYS n 2 28 SER n 2 29 THR n 2 30 VAL n 2 31 LYS n 2 32 SER n 2 33 LEU n 2 34 ARG n 2 35 GLN n 2 36 GLY n 2 37 LYS n 2 38 SER n 2 39 LYS n 2 40 LEU n 2 41 ILE n 2 42 ILE n 2 43 ILE n 2 44 ALA n 2 45 ALA n 2 46 ASN n 2 47 THR n 2 48 PRO n 2 49 VAL n 2 50 LEU n 2 51 ARG n 2 52 LYS n 2 53 SER n 2 54 GLU n 2 55 LEU n 2 56 GLU n 2 57 TYR n 2 58 TYR n 2 59 ALA n 2 60 MET n 2 61 LEU n 2 62 SER n 2 63 LYS n 2 64 THR n 2 65 LYS n 2 66 VAL n 2 67 TYR n 2 68 TYR n 2 69 PHE n 2 70 GLN n 2 71 GLY n 2 72 GLY n 2 73 ASN n 2 74 ASN n 2 75 GLU n 2 76 LEU n 2 77 GLY n 2 78 THR n 2 79 ALA n 2 80 VAL n 2 81 GLY n 2 82 LYS n 2 83 LEU n 2 84 PHE n 2 85 ARG n 2 86 VAL n 2 87 GLY n 2 88 VAL n 2 89 VAL n 2 90 SER n 2 91 ILE n 2 92 LEU n 2 93 GLU n 2 94 ALA n 2 95 GLY n 2 96 ASP n 2 97 SER n 2 98 ASP n 2 99 ILE n 2 100 LEU n 2 101 THR n 2 102 THR n 2 103 LEU n 2 104 ALA n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? yeast ? YSCRPL32 ? ? ? ? ? ? 'SACCHAROMYCES CEREVISIAE' ? ? ? ? ? ? ? NUCLEI ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'SYNTHESIZED USING IN VITRO T7 POLYMERASE' 2 1 sample ? ? ? yeast ? YSCRPL32 ? ? ? ? ? ? 'SACCHAROMYCES CEREVISIAE' ? ? ? ? ? 'RIBOSOME,60S SUBUNIT' ? CYTOPLASM bacteria 'ESCHERICHIA COLI' ? ? L30 ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? CYTOPLASM ? ? ? ? PMALC-L30 ? 'RECOMBINANT EXPRESSION AS A C-TERMINAL MALTOSE-BINDING PROTEIN FUSION IN ESCHERICHIA COLI STRAIN JM109 HOSTING PLASMID PMALC-30' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RL3E_YEAST _struct_ref.entity_id 2 _struct_ref.pdbx_db_accession ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1CK5 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14120 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 105 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 105 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 4 1 HNCA 1 5 1 HNCO 1 6 1 'HN(CO)CA' 1 7 1 HNCACB 1 8 1 HCCHTOCSY 1 9 1 NOESYHSQC 1 10 1 HNHA 1 11 1 HMQC-J 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 MM' _pdbx_nmr_exptl_sample_conditions.pressure_units atm # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '10% WATER/90% D2O' _pdbx_nmr_sample_details.solvent_system ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 600 ? 2 INOVA Varian 750 ? # _pdbx_nmr_refine.entry_id 1CK5 _pdbx_nmr_refine.method 'SIMULATED ANNEALING MOLECULAR DYNAMIC' _pdbx_nmr_refine.details ;CONSTRAINTS: DISTANCE PROTEIN INTRARESIDUE NOES: 898; INTERRESIDUE NOES: 1175; SEQUENTIAL (|I-J|=1): 512; SHORT-RANGE (|I-J|<=4): 328; LONG-RANGE (|I-J|>4): 335; HYDROGEN BONDS: 56; TOTAL: 2129. RNA INTRARESIDUE NOES: 249; INTERRESIDUE NOES: 221 SEQUENTIAL (|I-J|=1): 159; SHORT-RANGE (|I-J|<=4): 12; LONG-RANGE (| I-J|>1): 50; HYDROGEN BONDS: 77; TOTAL 547. PROTEIN-RNA INTRARMOLECULE NOES: 73; TORSION PROTEIN BACKBONE PHI: 76; SIDECHAIN KAI1: 59; TOTAL 135 RNA GLYCOSIDIC KAI, DELTA AND AMINO 107; TOTAL 107 ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1CK5 _pdbx_nmr_details.text ;MEAN STRUCTURE. THIS STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED L30 PROTEIN AND 13C, 15N-LABELED RNA IN COMPLEXED WITH THEIR UNLABELED COUNTERPARTS. ; # _pdbx_nmr_ensemble.entry_id 1CK5 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST TOTAL ENERGY' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement AMBER ? 'PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN' 1 'structure solution' NMRDRAW ? ? 2 'structure solution' NMRPIPE ? ? 3 # _exptl.entry_id 1CK5 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1CK5 _struct.title 'RIBOSOMAL PROTEIN L30-MRNA COMPLEX FROM YEAST' _struct.pdbx_descriptor '60S RIBOSOMAL PROTEIN L30/RNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CK5 _struct_keywords.pdbx_keywords RIBOSOME/RNA _struct_keywords.text 'RIBOSOMAL PROTEIN, PRE-MRNA, MRNA, AUTOREGULATION, PROTEIN-RNA COMPLEX, RIBOSOME-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU B 7 ? ILE B 17 ? GLU B 8 ILE B 18 5 ? 11 HELX_P HELX_P2 2 LYS B 27 ? GLN B 35 ? LYS B 28 GLN B 36 1 ? 9 HELX_P HELX_P3 3 VAL B 16 ? SER B 62 ? VAL B 17 SER B 63 1 ? 47 HELX_P HELX_P4 4 GLY B 72 ? ALA B 79 ? GLY B 73 ALA B 80 1 ? 8 HELX_P HELX_P5 5 ILE B 99 ? THR B 102 ? ILE B 100 THR B 103 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 6 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 6 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 6 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A G 26 O6 ? ? A A 7 A G 58 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog8 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 31 N3 ? ? A A 7 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 31 O4 ? ? A A 7 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 8 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 8 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 8 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 9 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 9 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 9 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 A U 28 O2 ? ? A G 10 A U 60 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A U 28 N3 ? ? A G 10 A U 60 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog18 hydrog ? ? A G 7 N1 ? ? ? 1_555 A G 24 N7 ? ? A G 11 A G 56 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? hydrog19 hydrog ? ? A G 7 N2 ? ? ? 1_555 A G 24 O6 ? ? A G 11 A G 56 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 13 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 13 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 13 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 27 N3 ? ? A G 13 A A 59 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog24 hydrog ? ? A U 10 N3 ? ? ? 1_555 A G 21 O6 ? ? A U 14 A G 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog25 hydrog ? ? A U 10 O2 ? ? ? 1_555 A G 21 N1 ? ? A U 14 A G 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog26 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 15 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 15 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 15 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 16 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 16 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 17 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 17 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 17 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? A G 18 A A 21 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog35 hydrog ? ? A G 14 N3 ? ? ? 1_555 A A 17 N6 ? ? A G 18 A A 21 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog36 hydrog ? ? A C 22 O2 ? ? ? 1_555 A A 27 O2* ? ? A C 54 A A 59 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog37 hydrog ? ? A A 23 N3 ? ? ? 1_555 A G 24 N2 ? ? A A 55 A G 56 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog38 hydrog ? ? A G 26 N1 ? ? ? 1_555 A G 30 O6 ? ? A G 58 A G 62 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR B 22 ? LEU B 24 ? TYR B 23 LEU B 25 A 2 VAL B 88 ? ILE B 91 ? VAL B 89 ILE B 92 A 3 ILE B 41 ? ALA B 44 ? ILE B 42 ALA B 45 A 4 VAL B 66 ? PHE B 69 ? VAL B 67 PHE B 70 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR B 23 ? O THR B 24 N SER B 90 ? N SER B 91 A 2 3 O VAL B 89 ? O VAL B 90 N ILE B 9 ? N ILE B 10 A 3 4 O ILE B 41 ? O ILE B 42 N TYR B 67 ? N TYR B 68 # _database_PDB_matrix.entry_id 1CK5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1CK5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 5 5 G G A . n A 1 2 G 2 6 6 G G A . n A 1 3 A 3 7 7 A A A . n A 1 4 C 4 8 8 C C A . n A 1 5 C 5 9 9 C C A . n A 1 6 G 6 10 10 G G A . n A 1 7 G 7 11 11 G G A . n A 1 8 A 8 12 12 A A A . n A 1 9 G 9 13 13 G G A . n A 1 10 U 10 14 14 U U A . n A 1 11 G 11 15 15 G G A . n A 1 12 U 12 16 16 U U A . n A 1 13 C 13 17 17 C C A . n A 1 14 G 14 18 18 G G A . n A 1 15 C 15 19 19 C C A . n A 1 16 A 16 20 20 A A A . n A 1 17 A 17 21 21 A A A . n A 1 18 G 18 50 50 G G A . n A 1 19 A 19 51 51 A A A . n A 1 20 C 20 52 52 C C A . n A 1 21 G 21 53 53 G G A . n A 1 22 C 22 54 54 C C A . n A 1 23 A 23 55 55 A A A . n A 1 24 G 24 56 56 G G A . n A 1 25 A 25 57 57 A A A . n A 1 26 G 26 58 58 G G A . n A 1 27 A 27 59 59 A A A . n A 1 28 U 28 60 60 U U A . n A 1 29 G 29 61 61 G G A . n A 1 30 G 30 62 62 G G A . n A 1 31 U 31 63 63 U U A . n A 1 32 C 32 64 64 C C A . n A 1 33 C 33 65 65 C C A . n B 2 1 ALA 1 2 2 ALA ALA B . n B 2 2 PRO 2 3 3 PRO PRO B . n B 2 3 VAL 3 4 4 VAL VAL B . n B 2 4 LYS 4 5 5 LYS LYS B . n B 2 5 SER 5 6 6 SER SER B . n B 2 6 GLN 6 7 7 GLN GLN B . n B 2 7 GLU 7 8 8 GLU GLU B . n B 2 8 SER 8 9 9 SER SER B . n B 2 9 ILE 9 10 10 ILE ILE B . n B 2 10 ASN 10 11 11 ASN ASN B . n B 2 11 GLN 11 12 12 GLN GLN B . n B 2 12 LYS 12 13 13 LYS LYS B . n B 2 13 LEU 13 14 14 LEU LEU B . n B 2 14 ALA 14 15 15 ALA ALA B . n B 2 15 LEU 15 16 16 LEU LEU B . n B 2 16 VAL 16 17 17 VAL VAL B . n B 2 17 ILE 17 18 18 ILE ILE B . n B 2 18 LYS 18 19 19 LYS LYS B . n B 2 19 SER 19 20 20 SER SER B . n B 2 20 GLY 20 21 21 GLY GLY B . n B 2 21 LYS 21 22 22 LYS LYS B . n B 2 22 TYR 22 23 23 TYR TYR B . n B 2 23 THR 23 24 24 THR THR B . n B 2 24 LEU 24 25 25 LEU LEU B . n B 2 25 GLY 25 26 26 GLY GLY B . n B 2 26 TYR 26 27 27 TYR TYR B . n B 2 27 LYS 27 28 28 LYS LYS B . n B 2 28 SER 28 29 29 SER SER B . n B 2 29 THR 29 30 30 THR THR B . n B 2 30 VAL 30 31 31 VAL VAL B . n B 2 31 LYS 31 32 32 LYS LYS B . n B 2 32 SER 32 33 33 SER SER B . n B 2 33 LEU 33 34 34 LEU LEU B . n B 2 34 ARG 34 35 35 ARG ARG B . n B 2 35 GLN 35 36 36 GLN GLN B . n B 2 36 GLY 36 37 37 GLY GLY B . n B 2 37 LYS 37 38 38 LYS LYS B . n B 2 38 SER 38 39 39 SER SER B . n B 2 39 LYS 39 40 40 LYS LYS B . n B 2 40 LEU 40 41 41 LEU LEU B . n B 2 41 ILE 41 42 42 ILE ILE B . n B 2 42 ILE 42 43 43 ILE ILE B . n B 2 43 ILE 43 44 44 ILE ILE B . n B 2 44 ALA 44 45 45 ALA ALA B . n B 2 45 ALA 45 46 46 ALA ALA B . n B 2 46 ASN 46 47 47 ASN ASN B . n B 2 47 THR 47 48 48 THR THR B . n B 2 48 PRO 48 49 49 PRO PRO B . n B 2 49 VAL 49 50 50 VAL VAL B . n B 2 50 LEU 50 51 51 LEU LEU B . n B 2 51 ARG 51 52 52 ARG ARG B . n B 2 52 LYS 52 53 53 LYS LYS B . n B 2 53 SER 53 54 54 SER SER B . n B 2 54 GLU 54 55 55 GLU GLU B . n B 2 55 LEU 55 56 56 LEU LEU B . n B 2 56 GLU 56 57 57 GLU GLU B . n B 2 57 TYR 57 58 58 TYR TYR B . n B 2 58 TYR 58 59 59 TYR TYR B . n B 2 59 ALA 59 60 60 ALA ALA B . n B 2 60 MET 60 61 61 MET MET B . n B 2 61 LEU 61 62 62 LEU LEU B . n B 2 62 SER 62 63 63 SER SER B . n B 2 63 LYS 63 64 64 LYS LYS B . n B 2 64 THR 64 65 65 THR THR B . n B 2 65 LYS 65 66 66 LYS LYS B . n B 2 66 VAL 66 67 67 VAL VAL B . n B 2 67 TYR 67 68 68 TYR TYR B . n B 2 68 TYR 68 69 69 TYR TYR B . n B 2 69 PHE 69 70 70 PHE PHE B . n B 2 70 GLN 70 71 71 GLN GLN B . n B 2 71 GLY 71 72 72 GLY GLY B . n B 2 72 GLY 72 73 73 GLY GLY B . n B 2 73 ASN 73 74 74 ASN ASN B . n B 2 74 ASN 74 75 75 ASN ASN B . n B 2 75 GLU 75 76 76 GLU GLU B . n B 2 76 LEU 76 77 77 LEU LEU B . n B 2 77 GLY 77 78 78 GLY GLY B . n B 2 78 THR 78 79 79 THR THR B . n B 2 79 ALA 79 80 80 ALA ALA B . n B 2 80 VAL 80 81 81 VAL VAL B . n B 2 81 GLY 81 82 82 GLY GLY B . n B 2 82 LYS 82 83 83 LYS LYS B . n B 2 83 LEU 83 84 84 LEU LEU B . n B 2 84 PHE 84 85 85 PHE PHE B . n B 2 85 ARG 85 86 86 ARG ARG B . n B 2 86 VAL 86 87 87 VAL VAL B . n B 2 87 GLY 87 88 88 GLY GLY B . n B 2 88 VAL 88 89 89 VAL VAL B . n B 2 89 VAL 89 90 90 VAL VAL B . n B 2 90 SER 90 91 91 SER SER B . n B 2 91 ILE 91 92 92 ILE ILE B . n B 2 92 LEU 92 93 93 LEU LEU B . n B 2 93 GLU 93 94 94 GLU GLU B . n B 2 94 ALA 94 95 95 ALA ALA B . n B 2 95 GLY 95 96 96 GLY GLY B . n B 2 96 ASP 96 97 97 ASP ASP B . n B 2 97 SER 97 98 98 SER SER B . n B 2 98 ASP 98 99 99 ASP ASP B . n B 2 99 ILE 99 100 100 ILE ILE B . n B 2 100 LEU 100 101 101 LEU LEU B . n B 2 101 THR 101 102 102 THR THR B . n B 2 102 THR 102 103 103 THR THR B . n B 2 103 LEU 103 104 104 LEU LEU B . n B 2 104 ALA 104 105 105 ALA ALA B . n # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-12-02 2 'Structure model' 1 1 2006-07-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 B GLU 55 ? ? HH B TYR 59 ? ? 1.33 2 1 HH B TYR 27 ? ? OE1 B GLU 55 ? ? 1.34 3 1 OE2 B GLU 57 ? ? HH B TYR 69 ? ? 1.37 4 1 OD2 B ASP 99 ? ? HG1 B THR 103 ? ? 1.39 5 1 OE2 B GLU 76 ? ? HG1 B THR 79 ? ? 1.41 6 1 O B PRO 3 ? ? HG B SER 6 ? ? 1.46 7 1 O B LEU 25 ? ? HG B SER 29 ? ? 1.47 8 1 HG B SER 39 ? ? O B TYR 59 ? ? 1.49 9 1 O B VAL 50 ? ? HG B SER 54 ? ? 1.50 10 1 O B SER 29 ? ? HG B SER 33 ? ? 1.50 11 1 O B SER 39 ? ? HG B SER 63 ? ? 1.52 12 1 OE1 B GLN 7 ? ? HH B TYR 68 ? ? 1.53 13 1 2HO* A G 56 ? ? O B ARG 86 ? ? 1.55 14 1 O B LEU 16 ? ? HG B SER 20 ? ? 1.59 15 1 O B ASP 99 ? ? HG1 B THR 102 ? ? 1.59 16 1 O3* A G 56 ? ? P A A 57 ? ? 1.60 17 1 O3* A A 55 ? ? P A G 56 ? ? 1.60 18 1 O3* A C 9 ? ? P A G 10 ? ? 1.60 19 1 O3* A G 61 ? ? P A G 62 ? ? 1.60 20 1 O3* A G 6 ? ? P A A 7 ? ? 1.61 21 1 O3* A G 5 ? ? P A G 6 ? ? 1.61 22 1 O3* A G 62 ? ? P A U 63 ? ? 1.61 23 1 O3* A U 14 ? ? P A G 15 ? ? 1.61 24 1 O3* A A 51 ? ? P A C 52 ? ? 1.61 25 1 O3* A G 11 ? ? P A A 12 ? ? 1.61 26 1 O3* A G 10 ? ? P A G 11 ? ? 1.61 27 1 O3* A A 21 ? ? P A G 50 ? ? 1.61 28 1 O3* A U 60 ? ? P A G 61 ? ? 1.61 29 1 O3* A G 13 ? ? P A U 14 ? ? 1.61 30 1 O3* A G 58 ? ? P A A 59 ? ? 1.61 31 1 O3* A A 7 ? ? P A C 8 ? ? 1.61 32 1 O3* A C 54 ? ? P A A 55 ? ? 1.61 33 1 O3* A C 52 ? ? P A G 53 ? ? 1.61 34 1 O3* A G 53 ? ? P A C 54 ? ? 1.61 35 1 O3* A A 12 ? ? P A G 13 ? ? 1.61 36 1 O3* A A 59 ? ? P A U 60 ? ? 1.61 37 1 O3* A G 50 ? ? P A A 51 ? ? 1.62 38 1 O3* A U 63 ? ? P A C 64 ? ? 1.62 39 1 O3* A C 64 ? ? P A C 65 ? ? 1.62 40 1 O3* A G 15 ? ? P A U 16 ? ? 1.62 41 1 O3* A C 8 ? ? P A C 9 ? ? 1.62 42 1 O3* A U 16 ? ? P A C 17 ? ? 1.62 43 1 O3* A A 57 ? ? P A G 58 ? ? 1.62 44 1 O3* A C 17 ? ? P A G 18 ? ? 1.62 45 1 O3* A A 20 ? ? P A A 21 ? ? 1.65 46 1 O3* A G 18 ? ? P A C 19 ? ? 1.65 47 1 O3* A C 19 ? ? P A A 20 ? ? 1.67 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C4 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 C _pdbx_validate_rmsd_bond.auth_seq_id_1 19 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N4 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 C _pdbx_validate_rmsd_bond.auth_seq_id_2 19 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.273 _pdbx_validate_rmsd_bond.bond_target_value 1.335 _pdbx_validate_rmsd_bond.bond_deviation -0.062 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 114.13 118.60 -4.47 0.60 N 2 1 C5 A A 12 ? ? C6 A A 12 ? ? N1 A A 12 ? ? 121.10 117.70 3.40 0.50 N 3 1 N1 A A 12 ? ? C6 A A 12 ? ? N6 A A 12 ? ? 113.46 118.60 -5.14 0.60 N 4 1 C6 A C 19 ? ? N1 A C 19 ? ? C2 A C 19 ? ? 114.11 120.30 -6.19 0.40 N 5 1 N1 A C 19 ? ? C2 A C 19 ? ? N3 A C 19 ? ? 114.39 119.20 -4.81 0.70 N 6 1 N3 A C 19 ? ? C4 A C 19 ? ? N4 A C 19 ? ? 102.38 118.00 -15.62 0.70 N 7 1 C5 A C 19 ? ? C4 A C 19 ? ? N4 A C 19 ? ? 111.03 120.20 -9.17 0.70 N 8 1 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 120.85 117.70 3.15 0.50 N 9 1 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 112.45 118.60 -6.15 0.60 N 10 1 N1 A A 51 ? ? C6 A A 51 ? ? N6 A A 51 ? ? 114.49 118.60 -4.11 0.60 N 11 1 C5 A A 55 ? ? C6 A A 55 ? ? N1 A A 55 ? ? 120.87 117.70 3.17 0.50 N 12 1 N1 A A 55 ? ? C6 A A 55 ? ? N6 A A 55 ? ? 113.47 118.60 -5.13 0.60 N 13 1 C5 A A 57 ? ? C6 A A 57 ? ? N1 A A 57 ? ? 120.89 117.70 3.19 0.50 N 14 1 N1 A A 57 ? ? C6 A A 57 ? ? N6 A A 57 ? ? 114.71 118.60 -3.89 0.60 N 15 1 N1 A A 59 ? ? C6 A A 59 ? ? N6 A A 59 ? ? 114.84 118.60 -3.76 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN B 7 ? ? -59.47 -7.88 2 1 GLU B 8 ? ? -57.03 4.77 3 1 TYR B 27 ? ? -107.95 -64.49 4 1 GLN B 36 ? ? -72.15 -71.34 5 1 SER B 39 ? ? -48.08 165.72 6 1 LYS B 40 ? ? -128.07 -101.39 7 1 LEU B 93 ? ? -85.41 -91.12 8 1 LEU B 104 ? ? -92.64 -72.09 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER B 39 ? ? LYS B 40 ? ? 146.69 2 1 ALA B 95 ? ? GLY B 96 ? ? -116.48 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 27 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.076 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A G 5 ? "O5'" ? A G 1 "O5'" 2 1 Y 1 A G 5 ? "C5'" ? A G 1 "C5'" 3 1 Y 1 A G 5 ? "C4'" ? A G 1 "C4'" 4 1 Y 1 A G 5 ? "O4'" ? A G 1 "O4'" 5 1 Y 1 A G 5 ? "C3'" ? A G 1 "C3'" 6 1 Y 1 A G 5 ? "O3'" ? A G 1 "O3'" 7 1 Y 1 A G 5 ? "C2'" ? A G 1 "C2'" 8 1 Y 1 A G 5 ? "O2'" ? A G 1 "O2'" 9 1 Y 1 A G 5 ? "C1'" ? A G 1 "C1'" 10 1 Y 1 A G 6 ? OP1 ? A G 2 OP1 11 1 Y 1 A G 6 ? OP2 ? A G 2 OP2 12 1 Y 1 A G 6 ? "O5'" ? A G 2 "O5'" 13 1 Y 1 A G 6 ? "C5'" ? A G 2 "C5'" 14 1 Y 1 A G 6 ? "C4'" ? A G 2 "C4'" 15 1 Y 1 A G 6 ? "O4'" ? A G 2 "O4'" 16 1 Y 1 A G 6 ? "C3'" ? A G 2 "C3'" 17 1 Y 1 A G 6 ? "O3'" ? A G 2 "O3'" 18 1 Y 1 A G 6 ? "C2'" ? A G 2 "C2'" 19 1 Y 1 A G 6 ? "O2'" ? A G 2 "O2'" 20 1 Y 1 A G 6 ? "C1'" ? A G 2 "C1'" 21 1 Y 1 A A 7 ? OP1 ? A A 3 OP1 22 1 Y 1 A A 7 ? OP2 ? A A 3 OP2 23 1 Y 1 A A 7 ? "O5'" ? A A 3 "O5'" 24 1 Y 1 A A 7 ? "C5'" ? A A 3 "C5'" 25 1 Y 1 A A 7 ? "C4'" ? A A 3 "C4'" 26 1 Y 1 A A 7 ? "O4'" ? A A 3 "O4'" 27 1 Y 1 A A 7 ? "C3'" ? A A 3 "C3'" 28 1 Y 1 A A 7 ? "O3'" ? A A 3 "O3'" 29 1 Y 1 A A 7 ? "C2'" ? A A 3 "C2'" 30 1 Y 1 A A 7 ? "O2'" ? A A 3 "O2'" 31 1 Y 1 A A 7 ? "C1'" ? A A 3 "C1'" 32 1 Y 1 A C 8 ? OP1 ? A C 4 OP1 33 1 Y 1 A C 8 ? OP2 ? A C 4 OP2 34 1 Y 1 A C 8 ? "O5'" ? A C 4 "O5'" 35 1 Y 1 A C 8 ? "C5'" ? A C 4 "C5'" 36 1 Y 1 A C 8 ? "C4'" ? A C 4 "C4'" 37 1 Y 1 A C 8 ? "O4'" ? A C 4 "O4'" 38 1 Y 1 A C 8 ? "C3'" ? A C 4 "C3'" 39 1 Y 1 A C 8 ? "O3'" ? A C 4 "O3'" 40 1 Y 1 A C 8 ? "C2'" ? A C 4 "C2'" 41 1 Y 1 A C 8 ? "O2'" ? A C 4 "O2'" 42 1 Y 1 A C 8 ? "C1'" ? A C 4 "C1'" 43 1 Y 1 A C 9 ? OP1 ? A C 5 OP1 44 1 Y 1 A C 9 ? OP2 ? A C 5 OP2 45 1 Y 1 A C 9 ? "O5'" ? A C 5 "O5'" 46 1 Y 1 A C 9 ? "C5'" ? A C 5 "C5'" 47 1 Y 1 A C 9 ? "C4'" ? A C 5 "C4'" 48 1 Y 1 A C 9 ? "O4'" ? A C 5 "O4'" 49 1 Y 1 A C 9 ? "C3'" ? A C 5 "C3'" 50 1 Y 1 A C 9 ? "O3'" ? A C 5 "O3'" 51 1 Y 1 A C 9 ? "C2'" ? A C 5 "C2'" 52 1 Y 1 A C 9 ? "O2'" ? A C 5 "O2'" 53 1 Y 1 A C 9 ? "C1'" ? A C 5 "C1'" 54 1 Y 1 A G 10 ? OP1 ? A G 6 OP1 55 1 Y 1 A G 10 ? OP2 ? A G 6 OP2 56 1 Y 1 A G 10 ? "O5'" ? A G 6 "O5'" 57 1 Y 1 A G 10 ? "C5'" ? A G 6 "C5'" 58 1 Y 1 A G 10 ? "C4'" ? A G 6 "C4'" 59 1 Y 1 A G 10 ? "O4'" ? A G 6 "O4'" 60 1 Y 1 A G 10 ? "C3'" ? A G 6 "C3'" 61 1 Y 1 A G 10 ? "O3'" ? A G 6 "O3'" 62 1 Y 1 A G 10 ? "C2'" ? A G 6 "C2'" 63 1 Y 1 A G 10 ? "O2'" ? A G 6 "O2'" 64 1 Y 1 A G 10 ? "C1'" ? A G 6 "C1'" 65 1 Y 1 A G 11 ? OP1 ? A G 7 OP1 66 1 Y 1 A G 11 ? OP2 ? A G 7 OP2 67 1 Y 1 A G 11 ? "O5'" ? A G 7 "O5'" 68 1 Y 1 A G 11 ? "C5'" ? A G 7 "C5'" 69 1 Y 1 A G 11 ? "C4'" ? A G 7 "C4'" 70 1 Y 1 A G 11 ? "O4'" ? A G 7 "O4'" 71 1 Y 1 A G 11 ? "C3'" ? A G 7 "C3'" 72 1 Y 1 A G 11 ? "O3'" ? A G 7 "O3'" 73 1 Y 1 A G 11 ? "C2'" ? A G 7 "C2'" 74 1 Y 1 A G 11 ? "O2'" ? A G 7 "O2'" 75 1 Y 1 A G 11 ? "C1'" ? A G 7 "C1'" 76 1 Y 1 A A 12 ? OP1 ? A A 8 OP1 77 1 Y 1 A A 12 ? OP2 ? A A 8 OP2 78 1 Y 1 A A 12 ? "O5'" ? A A 8 "O5'" 79 1 Y 1 A A 12 ? "C5'" ? A A 8 "C5'" 80 1 Y 1 A A 12 ? "C4'" ? A A 8 "C4'" 81 1 Y 1 A A 12 ? "O4'" ? A A 8 "O4'" 82 1 Y 1 A A 12 ? "C3'" ? A A 8 "C3'" 83 1 Y 1 A A 12 ? "O3'" ? A A 8 "O3'" 84 1 Y 1 A A 12 ? "C2'" ? A A 8 "C2'" 85 1 Y 1 A A 12 ? "O2'" ? A A 8 "O2'" 86 1 Y 1 A A 12 ? "C1'" ? A A 8 "C1'" 87 1 Y 1 A G 13 ? OP1 ? A G 9 OP1 88 1 Y 1 A G 13 ? OP2 ? A G 9 OP2 89 1 Y 1 A G 13 ? "O5'" ? A G 9 "O5'" 90 1 Y 1 A G 13 ? "C5'" ? A G 9 "C5'" 91 1 Y 1 A G 13 ? "C4'" ? A G 9 "C4'" 92 1 Y 1 A G 13 ? "O4'" ? A G 9 "O4'" 93 1 Y 1 A G 13 ? "C3'" ? A G 9 "C3'" 94 1 Y 1 A G 13 ? "O3'" ? A G 9 "O3'" 95 1 Y 1 A G 13 ? "C2'" ? A G 9 "C2'" 96 1 Y 1 A G 13 ? "O2'" ? A G 9 "O2'" 97 1 Y 1 A G 13 ? "C1'" ? A G 9 "C1'" 98 1 Y 1 A U 14 ? OP1 ? A U 10 OP1 99 1 Y 1 A U 14 ? OP2 ? A U 10 OP2 100 1 Y 1 A U 14 ? "O5'" ? A U 10 "O5'" 101 1 Y 1 A U 14 ? "C5'" ? A U 10 "C5'" 102 1 Y 1 A U 14 ? "C4'" ? A U 10 "C4'" 103 1 Y 1 A U 14 ? "O4'" ? A U 10 "O4'" 104 1 Y 1 A U 14 ? "C3'" ? A U 10 "C3'" 105 1 Y 1 A U 14 ? "O3'" ? A U 10 "O3'" 106 1 Y 1 A U 14 ? "C2'" ? A U 10 "C2'" 107 1 Y 1 A U 14 ? "O2'" ? A U 10 "O2'" 108 1 Y 1 A U 14 ? "C1'" ? A U 10 "C1'" 109 1 Y 1 A G 15 ? OP1 ? A G 11 OP1 110 1 Y 1 A G 15 ? OP2 ? A G 11 OP2 111 1 Y 1 A G 15 ? "O5'" ? A G 11 "O5'" 112 1 Y 1 A G 15 ? "C5'" ? A G 11 "C5'" 113 1 Y 1 A G 15 ? "C4'" ? A G 11 "C4'" 114 1 Y 1 A G 15 ? "O4'" ? A G 11 "O4'" 115 1 Y 1 A G 15 ? "C3'" ? A G 11 "C3'" 116 1 Y 1 A G 15 ? "O3'" ? A G 11 "O3'" 117 1 Y 1 A G 15 ? "C2'" ? A G 11 "C2'" 118 1 Y 1 A G 15 ? "O2'" ? A G 11 "O2'" 119 1 Y 1 A G 15 ? "C1'" ? A G 11 "C1'" 120 1 Y 1 A U 16 ? OP1 ? A U 12 OP1 121 1 Y 1 A U 16 ? OP2 ? A U 12 OP2 122 1 Y 1 A U 16 ? "O5'" ? A U 12 "O5'" 123 1 Y 1 A U 16 ? "C5'" ? A U 12 "C5'" 124 1 Y 1 A U 16 ? "C4'" ? A U 12 "C4'" 125 1 Y 1 A U 16 ? "O4'" ? A U 12 "O4'" 126 1 Y 1 A U 16 ? "C3'" ? A U 12 "C3'" 127 1 Y 1 A U 16 ? "O3'" ? A U 12 "O3'" 128 1 Y 1 A U 16 ? "C2'" ? A U 12 "C2'" 129 1 Y 1 A U 16 ? "O2'" ? A U 12 "O2'" 130 1 Y 1 A U 16 ? "C1'" ? A U 12 "C1'" 131 1 Y 1 A C 17 ? OP1 ? A C 13 OP1 132 1 Y 1 A C 17 ? OP2 ? A C 13 OP2 133 1 Y 1 A C 17 ? "O5'" ? A C 13 "O5'" 134 1 Y 1 A C 17 ? "C5'" ? A C 13 "C5'" 135 1 Y 1 A C 17 ? "C4'" ? A C 13 "C4'" 136 1 Y 1 A C 17 ? "O4'" ? A C 13 "O4'" 137 1 Y 1 A C 17 ? "C3'" ? A C 13 "C3'" 138 1 Y 1 A C 17 ? "O3'" ? A C 13 "O3'" 139 1 Y 1 A C 17 ? "C2'" ? A C 13 "C2'" 140 1 Y 1 A C 17 ? "O2'" ? A C 13 "O2'" 141 1 Y 1 A C 17 ? "C1'" ? A C 13 "C1'" 142 1 Y 1 A G 18 ? OP1 ? A G 14 OP1 143 1 Y 1 A G 18 ? OP2 ? A G 14 OP2 144 1 Y 1 A G 18 ? "O5'" ? A G 14 "O5'" 145 1 Y 1 A G 18 ? "C5'" ? A G 14 "C5'" 146 1 Y 1 A G 18 ? "C4'" ? A G 14 "C4'" 147 1 Y 1 A G 18 ? "O4'" ? A G 14 "O4'" 148 1 Y 1 A G 18 ? "C3'" ? A G 14 "C3'" 149 1 Y 1 A G 18 ? "O3'" ? A G 14 "O3'" 150 1 Y 1 A G 18 ? "C2'" ? A G 14 "C2'" 151 1 Y 1 A G 18 ? "O2'" ? A G 14 "O2'" 152 1 Y 1 A G 18 ? "C1'" ? A G 14 "C1'" 153 1 Y 1 A C 19 ? OP1 ? A C 15 OP1 154 1 Y 1 A C 19 ? OP2 ? A C 15 OP2 155 1 Y 1 A C 19 ? "O5'" ? A C 15 "O5'" 156 1 Y 1 A C 19 ? "C5'" ? A C 15 "C5'" 157 1 Y 1 A C 19 ? "C4'" ? A C 15 "C4'" 158 1 Y 1 A C 19 ? "O4'" ? A C 15 "O4'" 159 1 Y 1 A C 19 ? "C3'" ? A C 15 "C3'" 160 1 Y 1 A C 19 ? "O3'" ? A C 15 "O3'" 161 1 Y 1 A C 19 ? "C2'" ? A C 15 "C2'" 162 1 Y 1 A C 19 ? "O2'" ? A C 15 "O2'" 163 1 Y 1 A C 19 ? "C1'" ? A C 15 "C1'" 164 1 Y 1 A A 20 ? OP1 ? A A 16 OP1 165 1 Y 1 A A 20 ? OP2 ? A A 16 OP2 166 1 Y 1 A A 20 ? "O5'" ? A A 16 "O5'" 167 1 Y 1 A A 20 ? "C5'" ? A A 16 "C5'" 168 1 Y 1 A A 20 ? "C4'" ? A A 16 "C4'" 169 1 Y 1 A A 20 ? "O4'" ? A A 16 "O4'" 170 1 Y 1 A A 20 ? "C3'" ? A A 16 "C3'" 171 1 Y 1 A A 20 ? "O3'" ? A A 16 "O3'" 172 1 Y 1 A A 20 ? "C2'" ? A A 16 "C2'" 173 1 Y 1 A A 20 ? "O2'" ? A A 16 "O2'" 174 1 Y 1 A A 20 ? "C1'" ? A A 16 "C1'" 175 1 Y 1 A A 21 ? OP1 ? A A 17 OP1 176 1 Y 1 A A 21 ? OP2 ? A A 17 OP2 177 1 Y 1 A A 21 ? "O5'" ? A A 17 "O5'" 178 1 Y 1 A A 21 ? "C5'" ? A A 17 "C5'" 179 1 Y 1 A A 21 ? "C4'" ? A A 17 "C4'" 180 1 Y 1 A A 21 ? "O4'" ? A A 17 "O4'" 181 1 Y 1 A A 21 ? "C3'" ? A A 17 "C3'" 182 1 Y 1 A A 21 ? "O3'" ? A A 17 "O3'" 183 1 Y 1 A A 21 ? "C2'" ? A A 17 "C2'" 184 1 Y 1 A A 21 ? "O2'" ? A A 17 "O2'" 185 1 Y 1 A A 21 ? "C1'" ? A A 17 "C1'" 186 1 Y 1 A G 50 ? OP1 ? A G 18 OP1 187 1 Y 1 A G 50 ? OP2 ? A G 18 OP2 188 1 Y 1 A G 50 ? "O5'" ? A G 18 "O5'" 189 1 Y 1 A G 50 ? "C5'" ? A G 18 "C5'" 190 1 Y 1 A G 50 ? "C4'" ? A G 18 "C4'" 191 1 Y 1 A G 50 ? "O4'" ? A G 18 "O4'" 192 1 Y 1 A G 50 ? "C3'" ? A G 18 "C3'" 193 1 Y 1 A G 50 ? "O3'" ? A G 18 "O3'" 194 1 Y 1 A G 50 ? "C2'" ? A G 18 "C2'" 195 1 Y 1 A G 50 ? "O2'" ? A G 18 "O2'" 196 1 Y 1 A G 50 ? "C1'" ? A G 18 "C1'" 197 1 Y 1 A A 51 ? OP1 ? A A 19 OP1 198 1 Y 1 A A 51 ? OP2 ? A A 19 OP2 199 1 Y 1 A A 51 ? "O5'" ? A A 19 "O5'" 200 1 Y 1 A A 51 ? "C5'" ? A A 19 "C5'" 201 1 Y 1 A A 51 ? "C4'" ? A A 19 "C4'" 202 1 Y 1 A A 51 ? "O4'" ? A A 19 "O4'" 203 1 Y 1 A A 51 ? "C3'" ? A A 19 "C3'" 204 1 Y 1 A A 51 ? "O3'" ? A A 19 "O3'" 205 1 Y 1 A A 51 ? "C2'" ? A A 19 "C2'" 206 1 Y 1 A A 51 ? "O2'" ? A A 19 "O2'" 207 1 Y 1 A A 51 ? "C1'" ? A A 19 "C1'" 208 1 Y 1 A C 52 ? OP1 ? A C 20 OP1 209 1 Y 1 A C 52 ? OP2 ? A C 20 OP2 210 1 Y 1 A C 52 ? "O5'" ? A C 20 "O5'" 211 1 Y 1 A C 52 ? "C5'" ? A C 20 "C5'" 212 1 Y 1 A C 52 ? "C4'" ? A C 20 "C4'" 213 1 Y 1 A C 52 ? "O4'" ? A C 20 "O4'" 214 1 Y 1 A C 52 ? "C3'" ? A C 20 "C3'" 215 1 Y 1 A C 52 ? "O3'" ? A C 20 "O3'" 216 1 Y 1 A C 52 ? "C2'" ? A C 20 "C2'" 217 1 Y 1 A C 52 ? "O2'" ? A C 20 "O2'" 218 1 Y 1 A C 52 ? "C1'" ? A C 20 "C1'" 219 1 Y 1 A G 53 ? OP1 ? A G 21 OP1 220 1 Y 1 A G 53 ? OP2 ? A G 21 OP2 221 1 Y 1 A G 53 ? "O5'" ? A G 21 "O5'" 222 1 Y 1 A G 53 ? "C5'" ? A G 21 "C5'" 223 1 Y 1 A G 53 ? "C4'" ? A G 21 "C4'" 224 1 Y 1 A G 53 ? "O4'" ? A G 21 "O4'" 225 1 Y 1 A G 53 ? "C3'" ? A G 21 "C3'" 226 1 Y 1 A G 53 ? "O3'" ? A G 21 "O3'" 227 1 Y 1 A G 53 ? "C2'" ? A G 21 "C2'" 228 1 Y 1 A G 53 ? "O2'" ? A G 21 "O2'" 229 1 Y 1 A G 53 ? "C1'" ? A G 21 "C1'" 230 1 Y 1 A C 54 ? OP1 ? A C 22 OP1 231 1 Y 1 A C 54 ? OP2 ? A C 22 OP2 232 1 Y 1 A C 54 ? "O5'" ? A C 22 "O5'" 233 1 Y 1 A C 54 ? "C5'" ? A C 22 "C5'" 234 1 Y 1 A C 54 ? "C4'" ? A C 22 "C4'" 235 1 Y 1 A C 54 ? "O4'" ? A C 22 "O4'" 236 1 Y 1 A C 54 ? "C3'" ? A C 22 "C3'" 237 1 Y 1 A C 54 ? "O3'" ? A C 22 "O3'" 238 1 Y 1 A C 54 ? "C2'" ? A C 22 "C2'" 239 1 Y 1 A C 54 ? "O2'" ? A C 22 "O2'" 240 1 Y 1 A C 54 ? "C1'" ? A C 22 "C1'" 241 1 Y 1 A A 55 ? OP1 ? A A 23 OP1 242 1 Y 1 A A 55 ? OP2 ? A A 23 OP2 243 1 Y 1 A A 55 ? "O5'" ? A A 23 "O5'" 244 1 Y 1 A A 55 ? "C5'" ? A A 23 "C5'" 245 1 Y 1 A A 55 ? "C4'" ? A A 23 "C4'" 246 1 Y 1 A A 55 ? "O4'" ? A A 23 "O4'" 247 1 Y 1 A A 55 ? "C3'" ? A A 23 "C3'" 248 1 Y 1 A A 55 ? "O3'" ? A A 23 "O3'" 249 1 Y 1 A A 55 ? "C2'" ? A A 23 "C2'" 250 1 Y 1 A A 55 ? "O2'" ? A A 23 "O2'" 251 1 Y 1 A A 55 ? "C1'" ? A A 23 "C1'" 252 1 Y 1 A G 56 ? OP1 ? A G 24 OP1 253 1 Y 1 A G 56 ? OP2 ? A G 24 OP2 254 1 Y 1 A G 56 ? "O5'" ? A G 24 "O5'" 255 1 Y 1 A G 56 ? "C5'" ? A G 24 "C5'" 256 1 Y 1 A G 56 ? "C4'" ? A G 24 "C4'" 257 1 Y 1 A G 56 ? "O4'" ? A G 24 "O4'" 258 1 Y 1 A G 56 ? "C3'" ? A G 24 "C3'" 259 1 Y 1 A G 56 ? "O3'" ? A G 24 "O3'" 260 1 Y 1 A G 56 ? "C2'" ? A G 24 "C2'" 261 1 Y 1 A G 56 ? "O2'" ? A G 24 "O2'" 262 1 Y 1 A G 56 ? "C1'" ? A G 24 "C1'" 263 1 Y 1 A A 57 ? OP1 ? A A 25 OP1 264 1 Y 1 A A 57 ? OP2 ? A A 25 OP2 265 1 Y 1 A A 57 ? "O5'" ? A A 25 "O5'" 266 1 Y 1 A A 57 ? "C5'" ? A A 25 "C5'" 267 1 Y 1 A A 57 ? "C4'" ? A A 25 "C4'" 268 1 Y 1 A A 57 ? "O4'" ? A A 25 "O4'" 269 1 Y 1 A A 57 ? "C3'" ? A A 25 "C3'" 270 1 Y 1 A A 57 ? "O3'" ? A A 25 "O3'" 271 1 Y 1 A A 57 ? "C2'" ? A A 25 "C2'" 272 1 Y 1 A A 57 ? "O2'" ? A A 25 "O2'" 273 1 Y 1 A A 57 ? "C1'" ? A A 25 "C1'" 274 1 Y 1 A G 58 ? OP1 ? A G 26 OP1 275 1 Y 1 A G 58 ? OP2 ? A G 26 OP2 276 1 Y 1 A G 58 ? "O5'" ? A G 26 "O5'" 277 1 Y 1 A G 58 ? "C5'" ? A G 26 "C5'" 278 1 Y 1 A G 58 ? "C4'" ? A G 26 "C4'" 279 1 Y 1 A G 58 ? "O4'" ? A G 26 "O4'" 280 1 Y 1 A G 58 ? "C3'" ? A G 26 "C3'" 281 1 Y 1 A G 58 ? "O3'" ? A G 26 "O3'" 282 1 Y 1 A G 58 ? "C2'" ? A G 26 "C2'" 283 1 Y 1 A G 58 ? "O2'" ? A G 26 "O2'" 284 1 Y 1 A G 58 ? "C1'" ? A G 26 "C1'" 285 1 Y 1 A A 59 ? OP1 ? A A 27 OP1 286 1 Y 1 A A 59 ? OP2 ? A A 27 OP2 287 1 Y 1 A A 59 ? "O5'" ? A A 27 "O5'" 288 1 Y 1 A A 59 ? "C5'" ? A A 27 "C5'" 289 1 Y 1 A A 59 ? "C4'" ? A A 27 "C4'" 290 1 Y 1 A A 59 ? "O4'" ? A A 27 "O4'" 291 1 Y 1 A A 59 ? "C3'" ? A A 27 "C3'" 292 1 Y 1 A A 59 ? "O3'" ? A A 27 "O3'" 293 1 Y 1 A A 59 ? "C2'" ? A A 27 "C2'" 294 1 Y 1 A A 59 ? "O2'" ? A A 27 "O2'" 295 1 Y 1 A A 59 ? "C1'" ? A A 27 "C1'" 296 1 Y 1 A U 60 ? OP1 ? A U 28 OP1 297 1 Y 1 A U 60 ? OP2 ? A U 28 OP2 298 1 Y 1 A U 60 ? "O5'" ? A U 28 "O5'" 299 1 Y 1 A U 60 ? "C5'" ? A U 28 "C5'" 300 1 Y 1 A U 60 ? "C4'" ? A U 28 "C4'" 301 1 Y 1 A U 60 ? "O4'" ? A U 28 "O4'" 302 1 Y 1 A U 60 ? "C3'" ? A U 28 "C3'" 303 1 Y 1 A U 60 ? "O3'" ? A U 28 "O3'" 304 1 Y 1 A U 60 ? "C2'" ? A U 28 "C2'" 305 1 Y 1 A U 60 ? "O2'" ? A U 28 "O2'" 306 1 Y 1 A U 60 ? "C1'" ? A U 28 "C1'" 307 1 Y 1 A G 61 ? OP1 ? A G 29 OP1 308 1 Y 1 A G 61 ? OP2 ? A G 29 OP2 309 1 Y 1 A G 61 ? "O5'" ? A G 29 "O5'" 310 1 Y 1 A G 61 ? "C5'" ? A G 29 "C5'" 311 1 Y 1 A G 61 ? "C4'" ? A G 29 "C4'" 312 1 Y 1 A G 61 ? "O4'" ? A G 29 "O4'" 313 1 Y 1 A G 61 ? "C3'" ? A G 29 "C3'" 314 1 Y 1 A G 61 ? "O3'" ? A G 29 "O3'" 315 1 Y 1 A G 61 ? "C2'" ? A G 29 "C2'" 316 1 Y 1 A G 61 ? "O2'" ? A G 29 "O2'" 317 1 Y 1 A G 61 ? "C1'" ? A G 29 "C1'" 318 1 Y 1 A G 62 ? OP1 ? A G 30 OP1 319 1 Y 1 A G 62 ? OP2 ? A G 30 OP2 320 1 Y 1 A G 62 ? "O5'" ? A G 30 "O5'" 321 1 Y 1 A G 62 ? "C5'" ? A G 30 "C5'" 322 1 Y 1 A G 62 ? "C4'" ? A G 30 "C4'" 323 1 Y 1 A G 62 ? "O4'" ? A G 30 "O4'" 324 1 Y 1 A G 62 ? "C3'" ? A G 30 "C3'" 325 1 Y 1 A G 62 ? "O3'" ? A G 30 "O3'" 326 1 Y 1 A G 62 ? "C2'" ? A G 30 "C2'" 327 1 Y 1 A G 62 ? "O2'" ? A G 30 "O2'" 328 1 Y 1 A G 62 ? "C1'" ? A G 30 "C1'" 329 1 Y 1 A U 63 ? OP1 ? A U 31 OP1 330 1 Y 1 A U 63 ? OP2 ? A U 31 OP2 331 1 Y 1 A U 63 ? "O5'" ? A U 31 "O5'" 332 1 Y 1 A U 63 ? "C5'" ? A U 31 "C5'" 333 1 Y 1 A U 63 ? "C4'" ? A U 31 "C4'" 334 1 Y 1 A U 63 ? "O4'" ? A U 31 "O4'" 335 1 Y 1 A U 63 ? "C3'" ? A U 31 "C3'" 336 1 Y 1 A U 63 ? "O3'" ? A U 31 "O3'" 337 1 Y 1 A U 63 ? "C2'" ? A U 31 "C2'" 338 1 Y 1 A U 63 ? "O2'" ? A U 31 "O2'" 339 1 Y 1 A U 63 ? "C1'" ? A U 31 "C1'" 340 1 Y 1 A C 64 ? OP1 ? A C 32 OP1 341 1 Y 1 A C 64 ? OP2 ? A C 32 OP2 342 1 Y 1 A C 64 ? "O5'" ? A C 32 "O5'" 343 1 Y 1 A C 64 ? "C5'" ? A C 32 "C5'" 344 1 Y 1 A C 64 ? "C4'" ? A C 32 "C4'" 345 1 Y 1 A C 64 ? "O4'" ? A C 32 "O4'" 346 1 Y 1 A C 64 ? "C3'" ? A C 32 "C3'" 347 1 Y 1 A C 64 ? "O3'" ? A C 32 "O3'" 348 1 Y 1 A C 64 ? "C2'" ? A C 32 "C2'" 349 1 Y 1 A C 64 ? "O2'" ? A C 32 "O2'" 350 1 Y 1 A C 64 ? "C1'" ? A C 32 "C1'" 351 1 Y 1 A C 65 ? OP1 ? A C 33 OP1 352 1 Y 1 A C 65 ? OP2 ? A C 33 OP2 353 1 Y 1 A C 65 ? "O5'" ? A C 33 "O5'" 354 1 Y 1 A C 65 ? "C5'" ? A C 33 "C5'" 355 1 Y 1 A C 65 ? "C4'" ? A C 33 "C4'" 356 1 Y 1 A C 65 ? "O4'" ? A C 33 "O4'" 357 1 Y 1 A C 65 ? "C3'" ? A C 33 "C3'" 358 1 Y 1 A C 65 ? "O3'" ? A C 33 "O3'" 359 1 Y 1 A C 65 ? "C2'" ? A C 33 "C2'" 360 1 Y 1 A C 65 ? "O2'" ? A C 33 "O2'" 361 1 Y 1 A C 65 ? "C1'" ? A C 33 "C1'" # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1CK5 'double helix' 1CK5 'a-form double helix' 1CK5 tetraloop 1CK5 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 33 1_555 -0.329 -0.186 -0.118 -7.311 -5.770 0.369 1 A_G5:C65_A A 5 ? A 65 ? 19 1 1 A G 2 1_555 A C 32 1_555 -0.331 -0.183 0.204 4.826 -8.602 0.330 2 A_G6:C64_A A 6 ? A 64 ? 19 1 1 A A 3 1_555 A U 31 1_555 -0.080 -0.081 -0.039 -2.159 -18.867 6.097 3 A_A7:U63_A A 7 ? A 63 ? 20 1 1 A C 4 1_555 A G 30 1_555 0.300 -0.197 0.134 -5.496 -14.376 0.479 4 A_C8:G62_A A 8 ? A 62 ? 19 1 1 A C 5 1_555 A G 29 1_555 0.397 -0.207 0.014 -0.128 1.950 -1.477 5 A_C9:G61_A A 9 ? A 61 ? 19 1 1 A G 6 1_555 A U 28 1_555 -1.967 -0.549 0.166 -5.480 -26.303 -2.226 6 A_G10:U60_A A 10 ? A 60 ? 28 1 1 A G 7 1_555 A G 24 1_555 -5.298 -1.257 0.144 3.577 55.237 127.897 7 A_G11:G56_A A 11 ? A 56 ? 7 4 1 A G 9 1_555 A C 22 1_555 -0.675 -0.286 -0.028 -13.175 -13.191 0.496 8 A_G13:C54_A A 13 ? A 54 ? 19 1 1 A U 10 1_555 A G 21 1_555 2.191 -0.458 0.472 -12.000 -11.902 1.738 9 A_U14:G53_A A 14 ? A 53 ? 28 1 1 A G 11 1_555 A C 20 1_555 -0.414 -0.238 0.045 -9.168 -19.124 0.094 10 A_G15:C52_A A 15 ? A 52 ? 19 1 1 A U 12 1_555 A A 19 1_555 0.004 -0.089 0.261 3.780 -6.823 2.718 11 A_U16:A51_A A 16 ? A 51 ? 20 1 1 A C 13 1_555 A G 18 1_555 0.126 -0.102 -0.516 22.457 -10.173 -1.436 12 A_C17:G50_A A 17 ? A 50 ? 19 1 1 A G 14 1_555 A A 17 1_555 6.659 -4.732 0.312 16.551 -10.257 -6.681 13 A_G18:A21_A A 18 ? A 21 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 33 1_555 A G 2 1_555 A C 32 1_555 -0.303 -1.567 2.976 -1.198 1.224 30.139 -3.233 0.362 2.921 2.351 2.301 30.186 1 AA_G5G6:C64C65_AA A 5 ? A 65 ? A 6 ? A 64 ? 1 A G 2 1_555 A C 32 1_555 A A 3 1_555 A U 31 1_555 0.145 -2.098 3.199 0.099 15.802 31.019 -5.529 -0.231 1.936 27.429 -0.171 34.724 2 AA_G6A7:U63C64_AA A 6 ? A 64 ? A 7 ? A 63 ? 1 A A 3 1_555 A U 31 1_555 A C 4 1_555 A G 30 1_555 -0.638 -1.810 3.136 -1.875 7.203 36.412 -3.718 0.773 2.769 11.381 2.962 37.139 3 AA_A7C8:G62U63_AA A 7 ? A 63 ? A 8 ? A 62 ? 1 A C 4 1_555 A G 30 1_555 A C 5 1_555 A G 29 1_555 -0.562 -2.142 3.008 0.584 10.263 27.099 -6.106 1.228 2.063 20.969 -1.193 28.949 4 AA_C8C9:G61G62_AA A 8 ? A 62 ? A 9 ? A 61 ? 1 A C 5 1_555 A G 29 1_555 A G 6 1_555 A U 28 1_555 0.316 -2.899 3.271 1.893 11.461 8.245 -17.610 -0.297 -0.390 54.019 -8.921 14.237 5 AA_C9G10:U60G61_AA A 9 ? A 61 ? A 10 ? A 60 ? 1 A G 9 1_555 A C 22 1_555 A U 10 1_555 A G 21 1_555 0.284 -1.641 3.228 1.419 4.072 43.108 -2.606 -0.251 3.076 5.525 -1.925 43.313 6 AA_G13U14:G53C54_AA A 13 ? A 54 ? A 14 ? A 53 ? 1 A U 10 1_555 A G 21 1_555 A G 11 1_555 A C 20 1_555 -0.354 -1.566 2.849 5.865 11.538 23.738 -5.575 1.886 1.775 25.744 -13.086 26.993 7 AA_U14G15:C52G53_AA A 14 ? A 53 ? A 15 ? A 52 ? 1 A G 11 1_555 A C 20 1_555 A U 12 1_555 A A 19 1_555 0.339 -1.082 2.928 -3.536 1.773 30.527 -2.345 -1.246 2.806 3.350 6.681 30.776 8 AA_G15U16:A51C52_AA A 15 ? A 52 ? A 16 ? A 51 ? 1 A U 12 1_555 A A 19 1_555 A C 13 1_555 A G 18 1_555 -0.326 -1.635 2.677 1.930 5.229 28.965 -4.073 0.958 2.326 10.334 -3.814 29.486 9 AA_U16C17:G50A51_AA A 16 ? A 51 ? A 17 ? A 50 ? 1 A C 13 1_555 A G 18 1_555 A G 14 1_555 A A 17 1_555 -2.166 -0.648 3.480 -6.691 12.356 56.263 -1.386 1.851 3.495 12.881 6.975 57.852 10 AA_C17G18:A21G50_AA A 17 ? A 50 ? A 18 ? A 21 ? #